Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ERD1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51070 1282 / 0 SAG15, CLPD, ERD1 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) AT5G50920 761 / 0 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) AT3G48870 755 / 0 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2) AT2G25140 356 / 7e-108 HSP98.7, CLPB-M, CLPB4 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) AT5G15450 352 / 4e-106 AtCLPB3, APG6, CLPB3, CLPB-P CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) AT1G74310 316 / 2e-93 HOT1, ATHSP101 heat shock protein 101 (.1) AT4G14670 236 / 8e-67 CLPB2 casein lytic proteinase B2 (.1) AT3G45450 154 / 9e-41 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT2G40130 55 / 3e-07 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G07200 54 / 4e-07 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G112000 [exp] 1571 / 0 AT5G51070 1328 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.012G105900 [exp] 758 / 0 AT5G50920 1505 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.015G105100 [exp] 755 / 0 AT5G50920 1508 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.005G197400 [exp] 449 / 3e-148 AT5G50920 583 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.006G262700 [exp] 345 / 2e-103 AT2G25140 1361 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Potri.004G124800 [exp] 343 / 7e-103 AT5G15450 1567 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.017G090600 [exp] 335 / 5e-100 AT5G15450 1598 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.015G057000 [exp] 318 / 3e-94 AT1G74310 1567 / 0.0 heat shock protein 101 (.1) Potri.015G056900 [exp] 317 / 1e-93 AT1G74310 1566 / 0.0 heat shock protein 101 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043013 [exp] 1286 / 0 AT5G51070 1288 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10032514 [exp] 1286 / 0 AT5G51070 1280 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10036017 [exp] 747 / 0 AT5G50920 1542 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10016723 [exp] 742 / 0 AT5G50920 1526 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10032544 [exp] 699 / 0 AT5G50920 1271 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10043014 [exp] 672 / 0 AT5G51070 664 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10040528 [exp] 478 / 1e-154 AT1G74310 1496 / 0.0 heat shock protein 101 (.1) Lus10043197 [exp] 397 / 2e-129 AT5G50920 802 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10041018 [exp] 345 / 1e-103 AT2G25140 1511 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Lus10040527 [exp] 316 / 3e-97 AT1G74310 906 / 0.0 heat shock protein 101 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0023 [poplar] [flax] PF02861 [poplar] [flax] Clp_N Clp amino terminal domain, pathogenicity island component CL0023 [poplar] [flax] P-loop_NTPase PF07728 [poplar] [flax] AAA_5 AAA domain (dynein-related subfamily) CL0671 [poplar] [flax] AAA_lid PF10431 [poplar] [flax] ClpB_D2-small C-terminal, D2-small domain, of ClpB protein
Representative CDS sequence Show only first row Show all	>Potri.015G110000.2 pacid=42775264 polypeptide=Potri.015G110000.2.p locus=Potri.015G110000 ID=Potri.015G110000.2.v4.1 annot-version=v4.1 ATGGAAGTGTTACTGTCTTCATCATCTCCTTTATCAGTTCATTCAAGATTGGCTTTCTATGCACTTAAAAAACCAAAAGATCCTACCATTGCCTTTCACT CTAGCAACAGCAACGCAATATCTTCTTCATTTTCTTCTTGTTTTGGCATCTCAATCTCACAAAGGCTACAAAGCAAGAAGACCCTTTTTTTAAAACGTTT CAATTCCAGCAAAAAACGTAGAATTCTTCAAGTTTCTGCTGTTTTTGAGAGATTTACAGAGAGAGCAATAAAAGCTGTGATTTTTTCTCAGAGAGAAGCA ATAGCTTTAGGCAAAGATACGGTTTTTACACAGCATCTTTTGTTGGGTTTAATTGGTGAAGATTGTGATCCAAAAGGGTTTCTTGGGTCTGGAATCAAGA TTGATGAAGCTCGTGAAGTTGTTAAAAGCACTTGGGATAGTGAGAGTGATAGTGTTGATGCTAGCGAGTCAGTTTCTAAAGAAGAGAGTGGTGTTTCCCC TAGTAATGTGCCCTTTTCTATTAATACTAAGAGGGTTTTTGAGGTTGCTGTTGAGTATTCAAGGGCAATGGGTCATAATTTTATTGCACCAGAACATATA GCCATCGGTTTGTTCACCGTTGAAGATGGAAATGCAGACAGGGTTCTTAAGAGATTTGGTGTTGATGGCGATCACTTGGCTGCTATAGCAGTCACCAAAC TTCAAGGGGAGCTTGTGAAAGATGGAAGAGAACCATCTGTGGAATCAAAAGGAAAACGTGAGAAATCTTTTTCTAAGAAAGCAGCAAGAGATAAGAGTGC ATTGGCCCAATTCTGTGTGGATCTTACTGCCCAAGCAAGTGAAGGACTCATTGATCCAGTAATTGGAAGACACTCTGAAATTGAAAGAATTGTTCAGATA CTTTGCCGTAGAGCGAAAAATAACCCCATTCTTCTTGGTGAAAGTGGAGTTGGAAAAACAGCCATTGCCGAAGGATTAGCAACTAGTATCGCACAGGCTG ACGTTCCTGTGTTTCTCCTGGAGAAGCGTGTAATGTCCTTGGATGTTGGACTGTTAATTGCTGGTGCAAAGGAAAGGGGAGAACTAGAGGCACGAGTTAC TACATTAATAAGAGAGATACTGAAAGAAGGCAACATCATTCTTTTTATTGATGAAGTGCACACACTAGTTGGGTCTGGCACTGTCGGAAAAGGGAACAAG GGATCTGGCCTCGACATTGCTAATTTATTGAAGCCATCTCTTGGGAGGGGTGAATTTCAGTGTATCGCATCCACAACAGTTGACGAATACAGAACTCATT TTGAAAATGATAAAGCATTAGCAAGGAGATTTCAGCCTGTGTTGATTAATGAGCCAAGCCAGGAGGATGCAGTTAGGATCTTGTTGGGTCTGCAACAAAA ATATGAGGCCCATCACAACTGCAGATTCACTCTTGAAGCCATAAATGCTGCCGTGAACCTGTCAGCAAGATATATTGCTGATAGATATCTTCCAGATAAA GCTATTGATCTCATTGATGAGGCAGGAAGTAGAGCTCGTATTGAGGCCTATAGAAGGAAGAAAGAACAAAAAAGCTTTATACTTTCAAAGTCGCCCGATG ATTATTGGCAAGAAATTAGAACTGTCCAGGCCATGCATGAAGTGGTTCTGGCAAGTCGGTTGACAAATGATGACAGTGCTTCCAGCATGGATGGCACTGG AGAAATTACTTTAGAGTCTCGTTTGCCGCCTGCATTAAATGATGATGAACCTCCTGTGGTGGGGCGTGACGATATAGCAGCAGTTGCTTCACTCTGGTCA GGAATACCAGTTCAGCAGCTGACTGCCGAGGAAAGAATGTTTCTGGTGGACCTTGAAGAGGAGCTTAGAAAACGAGTTATTGGTCAAGATGAGGCTATTG CTGCAATATCTCGAGCTGTTAAGAGATCCCGTGTTGGCCTGAAGGATCCTGATAGGCCCATAGCAGCAATGCTGTTTTGTGGACCAACTGGGGTTGGCAA GACTGAACTAACAAAAGCTTTGGCTCGAAGTTATTTTGGATCAGAGTCAGCCATGCTTAGATTGGACATGAGTGAGTATATGGAACGACACACTGTGAGC AAGTTAATAGGAGCACCTCCAGGCTATGTTGGTTATGGTGAGGGGGGTATTTTGACAGAAGCTATTAGAAAACAGCCTTTCACAGTGGTTTTGCTTGATG AAATAGAAAAGGCACATCCAGATATATTCAACATTCTCCTCCAATTATTTGAAGATGGCCACCTTACAGATTCTCAGGGAAGGAGGGTATCATTTAAGAA TGCATTGGTAGTAATGACCTCAAATGTTGGTTCTACTGCCATTGCAAAGGGTGGGCGCGTCTCCATCGGTTTCATGATTGCAGATGATGAGAATTCTTCT TATGCTGCAATAAAATCATTGGTAATGGAAGAACTCAAGGGATATTTTCGTCCAGAGTTGCTCAACAGGATAGACGAAGTTGTGGTATTCCATCCCCTTG AGAAGGCTCAGACGCTCCAGATTTTGAATATTATGCTGCAAGACGTGAAAGAAAGGCTGATATCTCTTGGAATTGGGTTGGAGGTGTCAGAATCAATAAA AGATATTGTATGCCAGCAAGGTTACGACCAGTTTTATGGTGCCCGGCCTCTCAGGAGAGCAGTTACTCAAATAATCGAAAACCCCTTGAGTGAAGCATTC CTTGCCGGAGACTTTAAGCCTGGTGACACAGCTTTCTTTGATCTGGATGCTTCAGGCAATCCAGTTGTCTCGCATTGGTCAGCTATGAGAATGCACTTGT CTGAGACAACATCAACCTTCTAA
AA sequence Show only first row Show all	>Potri.015G110000.2 pacid=42775264 polypeptide=Potri.015G110000.2.p locus=Potri.015G110000 ID=Potri.015G110000.2.v4.1 annot-version=v4.1 MEVLLSSSSPLSVHSRLAFYALKKPKDPTIAFHSSNSNAISSSFSSCFGISISQRLQSKKTLFLKRFNSSKKRRILQVSAVFERFTERAIKAVIFSQREA IALGKDTVFTQHLLLGLIGEDCDPKGFLGSGIKIDEAREVVKSTWDSESDSVDASESVSKEESGVSPSNVPFSINTKRVFEVAVEYSRAMGHNFIAPEHI AIGLFTVEDGNADRVLKRFGVDGDHLAAIAVTKLQGELVKDGREPSVESKGKREKSFSKKAARDKSALAQFCVDLTAQASEGLIDPVIGRHSEIERIVQI LCRRAKNNPILLGESGVGKTAIAEGLATSIAQADVPVFLLEKRVMSLDVGLLIAGAKERGELEARVTTLIREILKEGNIILFIDEVHTLVGSGTVGKGNK GSGLDIANLLKPSLGRGEFQCIASTTVDEYRTHFENDKALARRFQPVLINEPSQEDAVRILLGLQQKYEAHHNCRFTLEAINAAVNLSARYIADRYLPDK AIDLIDEAGSRARIEAYRRKKEQKSFILSKSPDDYWQEIRTVQAMHEVVLASRLTNDDSASSMDGTGEITLESRLPPALNDDEPPVVGRDDIAAVASLWS GIPVQQLTAEERMFLVDLEEELRKRVIGQDEAIAAISRAVKRSRVGLKDPDRPIAAMLFCGPTGVGKTELTKALARSYFGSESAMLRLDMSEYMERHTVS KLIGAPPGYVGYGEGGILTEAIRKQPFTVVLLDEIEKAHPDIFNILLQLFEDGHLTDSQGRRVSFKNALVVMTSNVGSTAIAKGGRVSIGFMIADDENSS YAAIKSLVMEELKGYFRPELLNRIDEVVVFHPLEKAQTLQILNIMLQDVKERLISLGIGLEVSESIKDIVCQQGYDQFYGARPLRRAVTQIIENPLSEAF LAGDFKPGDTAFFDLDASGNPVVSHWSAMRMHLSETTSTF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Potri.015G110000 [exp]	0	1	Pt-ERD1.3
					Potri.008G061600 [exp]	1.00	0.9803
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Potri.001G100200 [exp]	2.00	0.9768
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.004G055900 [exp]	4.35	0.9580
AT4G32250			Protein kinase superfamily pro...		Potri.006G255700 [exp]	4.47	0.9630
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Potri.001G112600 [exp]	5.29	0.9682
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Potri.009G098100 [exp]	6.48	0.9566
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Potri.008G101000 [exp]	6.70	0.9740	Pt-GAS1.1
AT4G27410	NAC	RD26, ANAC072	NAC (No Apical Meristem) domai...		Potri.011G123300 [exp]	6.70	0.9724	Pt-ATNAC3.2,NAC036
AT5G48100		LAC15, TT10, AT...	TRANSPARENT TESTA 10, LACCASE-...		Potri.005G200600 [exp]	8.00	0.9727
AT4G27410	NAC	RD26, ANAC072	NAC (No Apical Meristem) domai...		Potri.001G404100 [exp]	10.95	0.9607	Pt-ATNAC3.1

Compare expression of checked genes

Potri.015G110000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.