Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SKS1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25240 884 / 0 SKS1 SKU5 similar 1 (.1) AT5G51480 859 / 0 SKS2 SKU5 similar 2 (.1) AT4G12420 798 / 0 SKU5 Cupredoxin superfamily protein (.1.2) AT5G48450 671 / 0 SKS3 SKU5 similar 3 (.1) AT1G21850 490 / 3e-168 SKS8 SKU5 similar 8 (.1) AT1G76160 488 / 2e-167 SKS5 SKU5 similar 5 (.1) AT4G22010 487 / 2e-167 SKS4 SKU5 similar 4 (.1) AT4G38420 486 / 6e-167 SKS9 SKU5 similar 9 (.1) AT1G21860 485 / 1e-166 SKS7 SKU5 similar 7 (.1) AT4G37160 479 / 3e-164 SKS15 SKU5 similar 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G126400 [exp] 1064 / 0 AT4G25240 883 / 0.0 SKU5 similar 1 (.1) Potri.001G120300 [exp] 845 / 0 AT4G12420 930 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.003G112700 [exp] 844 / 0 AT4G12420 932 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.014G177700 [exp] 716 / 0 AT5G48450 885 / 0.0 SKU5 similar 3 (.1) Potri.002G021000 [exp] 500 / 3e-172 AT1G75790 670 / 0.0 SKU5 similar 18 (.1) Potri.004G180500 [exp] 499 / 6e-172 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.002G227600 [exp] 498 / 1e-171 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.014G154500 [exp] 498 / 1e-171 AT4G22010 780 / 0.0 SKU5 similar 4 (.1) Potri.005G247700 [exp] 489 / 4e-168 AT1G76160 878 / 0.0 SKU5 similar 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031143 [exp] 919 / 0 AT4G25240 898 / 0.0 SKU5 similar 1 (.1) Lus10031722 [exp] 917 / 0 AT4G25240 897 / 0.0 SKU5 similar 1 (.1) Lus10038920 [exp] 861 / 0 AT5G51480 851 / 0.0 SKU5 similar 2 (.1) Lus10027207 [exp] 847 / 0 AT5G51480 840 / 0.0 SKU5 similar 2 (.1) Lus10004339 [exp] 821 / 0 AT4G12420 979 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10028921 [exp] 820 / 0 AT4G12420 975 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10032241 [exp] 798 / 0 AT4G12420 950 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10024604 [exp] 796 / 0 AT4G12420 941 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10025860 [exp] 713 / 0 AT5G48450 882 / 0.0 SKU5 similar 3 (.1) Lus10038239 [exp] 697 / 0 AT5G48450 858 / 0.0 SKU5 similar 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF00394 [poplar] [flax] Cu-oxidase Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07731 [poplar] [flax] Cu-oxidase_2 Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07732 [poplar] [flax] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Potri.015G127200.1 pacid=42775796 polypeptide=Potri.015G127200.1.p locus=Potri.015G127200 ID=Potri.015G127200.1.v4.1 annot-version=v4.1 ATGGCTTTGTTCCAGTCCTCTTCAACTTCTCTGTTTCTTTTGATTCACATTGCTCTGCTTTCAACCCTCTCTCTTGCAGCAGACCCAACTGTCTCTTTTG ACTTCAAGCTCTCTTACATCACTGTCTCTCCTCTTGGTGTTCCTCAAAAGGTTATAGCTGTCAACGGACAGTTTCCTGGTCCTCTTGTTAATGCTACTAC TAACAATAATGTTGTTATAAATGTACGAAATGATTTGGATGAAAACCTCCTAATGACATGGCCTGGGATCCAAATGCGACGCAATTCATGGCAGGATGGT GTTCTGGGCACAAATTGTCCAATCCCTCCGAATTGGGACTGGACTTACAGCTTTCAACTAAAAGATCAGATTGGGAGCTTTTTCTACTACCCGTCTCTGA ATCTTCAAAGAGCATCCGGTGGCTTTGGTCCATTTGTTATTAATAACAGGGCAATTATCCAAATTCCTTTCGCTCAGCCAGATGGTGATTTTGTACTCCT GATTGGTGACTGGTATACACGGAACCATTCGGCGCTGAGAGCTGATCTTGACTCTGGAAAAGACCTTGGAATGCCTGATGGAGTTTTAATTAATGGGAAA GGGCCTTACAGATACAACACAACTCTTGTGCCTGATGGGTTACCTTATGAAACCATCAAAGTTGATCCAGGCAAGACTTATCGATTTCGTGTGCATAATG TTGGGACTTCTACTAGTTTGAACTTTAGAATCCAGGGACACAATCTGCTGCTTGTGGAAACAGAGGGACATTATACTGTGCAACAAAATTTCTCTAGTTT TGATATTCATGTGGGGCAGTCTTGTTCCTTTTTGGTTACCATGGATCAGAATGCTACTAGTGATTACTATATTGTAGCAAGTGCTCGGTTTGTGAATGAA TCACTTTGGCAAAAAGTCACAGGTGTAGGAATTCTGCAATATTCAAATTCAAAAGGGAGTGCAACTGGTCCTCTGCCTGAAGCACCAAGTGATATTTATA ACCAGTGGTCAGCCATGAACCAGCCCAAGGCCATCAGGCAAAATACAACTGCAAGTGGAGCTCGCCCAAATCCACAGGGGTCTTTTCACTATGGTTCAAT CAATGTGACGGACACATATATCTTAAGGAGCTTGCCACCATCTACCATTGATGGGAAGCTGCGTGCAACTCTGAATGGGATATCATTTGTCAATCCAGAC ACACCAATCCGGCTTGCTGACCTCAACCAAGTGAAGGGATCTTACAAGCTTGATTTTCCCAGTGAGCCACTTAACAGACCTCTTCGGAGGGATACCTCTG TCATTAATGCTACATATAAGGGATTTATAGAAGTCATATTGCAGAACAATGATACCAAAATGCAGAGCTTTCACATGAATGGTTACTCCTTTTTTGTTGT TGGTATGGACTGGGGGATTTGGTCAGAGAACAGCAGAGGTTCATACAATAAGTGGGATTCTATTTCTCGCAGCACAATAGAGGTTTACCCTGGGGGATGG ACAGCAGTCCTTGCTTCCCTTGACAATGTTGGAATATGGAATCTGAGAGTAGAAAATCTTGATAGATGGTATCTCGGCCAAGAAACATATATGAAAATCA CCAATCCCGAGGAAAACGGCGAAACAGAGATGGCCCCCCCTGACAATGTTCTATTTTGTGGTGCTCTTGCTTCCAAACAGCAGGATCGAAGTCACAAAGA TTCTGCAGGATCGATTCTCCAGGGCAATCCTAATCTGTTTTTCACTGTGCTGATGGCGGTCTGCGCCGCAGTTTTGGTTTTCAGTTAA
AA sequence Show only first row Show all	>Potri.015G127200.1 pacid=42775796 polypeptide=Potri.015G127200.1.p locus=Potri.015G127200 ID=Potri.015G127200.1.v4.1 annot-version=v4.1 MALFQSSSTSLFLLIHIALLSTLSLAADPTVSFDFKLSYITVSPLGVPQKVIAVNGQFPGPLVNATTNNNVVINVRNDLDENLLMTWPGIQMRRNSWQDG VLGTNCPIPPNWDWTYSFQLKDQIGSFFYYPSLNLQRASGGFGPFVINNRAIIQIPFAQPDGDFVLLIGDWYTRNHSALRADLDSGKDLGMPDGVLINGK GPYRYNTTLVPDGLPYETIKVDPGKTYRFRVHNVGTSTSLNFRIQGHNLLLVETEGHYTVQQNFSSFDIHVGQSCSFLVTMDQNATSDYYIVASARFVNE SLWQKVTGVGILQYSNSKGSATGPLPEAPSDIYNQWSAMNQPKAIRQNTTASGARPNPQGSFHYGSINVTDTYILRSLPPSTIDGKLRATLNGISFVNPD TPIRLADLNQVKGSYKLDFPSEPLNRPLRRDTSVINATYKGFIEVILQNNDTKMQSFHMNGYSFFVVGMDWGIWSENSRGSYNKWDSISRSTIEVYPGGW TAVLASLDNVGIWNLRVENLDRWYLGQETYMKITNPEENGETEMAPPDNVLFCGALASKQQDRSHKDSAGSILQGNPNLFFTVLMAVCAAVLVFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25240		SKS1	SKU5 similar 1 (.1)		Potri.015G127200 [exp]	0	1	SKS1.3
AT5G35670		IQD33	IQ-domain 33 (.1)		Potri.014G161000 [exp]	2.44	0.8441
AT4G23020			unknown protein		Potri.003G121100 [exp]	3.46	0.8048
AT5G18840			Major facilitator superfamily ...		Potri.010G026500 [exp]	4.89	0.8096
AT1G67590			Remorin family protein (.1.2)		Potri.010G056800 [exp]	4.89	0.8275
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Potri.009G161700 [exp]	5.74	0.8164
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Potri.001G071000 [exp]	7.34	0.7797	EXGT.1
AT5G21105			Plant L-ascorbate oxidase (.1....		Potri.009G159700 [exp]	8.24	0.7365	AO1.4
AT1G57820		ORTH2, VIM1	VARIANT IN METHYLATION 1, ORTH...		Potri.003G162400 [exp]	9.79	0.7760
AT4G01140			Protein of unknown function (D...		Potri.002G166900 [exp]	9.89	0.7740
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Potri.004G183500 [exp]	12.32	0.7807

Compare expression of checked genes

Potri.015G127200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.