Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	AAT1.2,PtrCAT12
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21120 846 / 0 CAT1, AAT1 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) AT2G34960 629 / 0 CAT5 cationic amino acid transporter 5 (.1) AT1G17120 540 / 0 CAT8 cationic amino acid transporter 8 (.1) AT3G10600 424 / 9e-142 CAT7 cationic amino acid transporter 7 (.1) AT5G04770 407 / 3e-135 CAT6, ATCAT6 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) AT5G36940 223 / 1e-64 CAT3 cationic amino acid transporter 3 (.1) AT3G03720 222 / 2e-64 CAT4 cationic amino acid transporter 4 (.1.2) AT1G58030 205 / 6e-58 CAT2 cationic amino acid transporter 2 (.1) AT1G05940 185 / 4e-51 CAT9 cationic amino acid transporter 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G131300 [exp] 996 / 0 AT4G21120 848 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030900 [exp] 880 / 0 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030833 [exp] 880 / 0 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.003G154600 [exp] 630 / 0 AT2G34960 870 / 0.0 cationic amino acid transporter 5 (.1) Potri.001G378500 [exp] 560 / 0 AT1G17120 785 / 0.0 cationic amino acid transporter 8 (.1) Potri.008G017100 [exp] 423 / 2e-141 AT3G10600 778 / 0.0 cationic amino acid transporter 7 (.1) Potri.010G241000 [exp] 418 / 2e-139 AT3G10600 781 / 0.0 cationic amino acid transporter 7 (.1) Potri.003G083700 [exp] 393 / 5e-130 AT5G04770 509 / 7e-176 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Potri.001G150700 [exp] 385 / 8e-127 AT5G04770 519 / 2e-179 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001581 [exp] 863 / 0 AT4G21120 915 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10023271 [exp] 839 / 0 AT4G21120 902 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10042817 [exp] 651 / 0 AT4G21120 731 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10005574 [exp] 548 / 0 AT1G17120 811 / 0.0 cationic amino acid transporter 8 (.1) Lus10000962 [exp] 371 / 5e-121 AT5G04770 543 / 0.0 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Lus10040142 [exp] 369 / 3e-120 AT5G04770 547 / 0.0 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Lus10003697 [exp] 314 / 2e-100 AT4G21120 416 / 2e-140 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10028195 [exp] 235 / 2e-69 AT1G05940 763 / 0.0 cationic amino acid transporter 9 (.1) Lus10042898 [exp] 218 / 2e-63 AT1G05940 763 / 0.0 cationic amino acid transporter 9 (.1) Lus10020322 [exp] 218 / 2e-62 AT1G58030 949 / 0.0 cationic amino acid transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF13520 [poplar] [flax] AA_permease_2 Amino acid permease CL0062 [poplar] [flax] APC PF13906 [poplar] [flax] AA_permease_C C-terminus of AA_permease
Representative CDS sequence Show only first row Show all	>Potri.015G133100.1 pacid=42775923 polypeptide=Potri.015G133100.1.p locus=Potri.015G133100 ID=Potri.015G133100.1.v4.1 annot-version=v4.1 ATGGGGGGTGGCGACATTCATATTGATCATCAAGAAGAAGGGCTGAGGAGGAGAGGATGTGGATGCAGCTGCTCGAAGAACGATTTCTTGCCGGAGGAAT CATTCCAAAGCTTTGGAAATTATCTTCAAGCACTTAAAGAAACTCCCATGAGGTTCAAAGACAGGCTCCTGACTCGATCCAAGGACACGACGGAGATCCA TGAGATCAAGGCCAGAAGTGAGCATGAGATGAAGAAAACCCTAACTTGGTGGGATCTCATATGGTTCGGCATTGGTGCTGTCATTGGTGCTGGCATTTTC GTCCTCACCGGACTTGAGGCCAGAGAACATGCTGGTCCTGCCGTCGTCTTGTCTTACGTTGTTTCCGGTGTTTCTGCCATGCTTTCTGTTTTCTGCTACA CCGAATTTGCTGTGGAAATCCCCGTTGCAGGTGGTTCTTTTGCTTATTTGAGGGTAGAGCTAGGCGACTTCATGGCCTTCATTGCTGCTGGCAACATCTT GCTTGAGTATGTCATTGGTGGTGCTGCTGTTTCTAGGGCATGGACATCCTACTTTGCCACTCTTTGTAACCACAAACCAGATGATTTCCGTATCATAGCC CATAGCCTTCCTGATGACTATGGCCACCTTGATCCCATTGCTGTTCTTGTTGGTGTTGTGATTTGTATCCTTGCAGTCCTTAGTACCAAGGGCTCGTCAC GCTTCAATTATGTTGCTTCCATCATCCATGTTGTAGTGATCCTCTTCATCATTGTTGCTGGTCTTGCCAAAGCAGACACAAAAAATTACGCTGATTTTGC TCCCAATGGTGCCCATGGTATTTTCACGGCTTCAGCGGTGCTTTTCTTTGCCTATGTTGGATTTGATGCTGTTTCGACCATGGCAGAAGAAACCAAGAAT CCTGCTCGAGATATCCCGATCGGTCTCGTTGGCTCAATGGCAATAACTACACTAGCATATTGTTTGCTAGCAGTAACTTTGTGCCTGATGGTGCCATACA AGATGATTGATGTGGATGCCCCATTTTCAGTAGCATTTGAGTCTGTAGGTTGGGGTTGGGCTAAGTACATTGTTGCTGCTGGTGCATTGAAAGGCATGAC AACTGTTTTGCTCGTTTCTGCTGTGGGGCAGGCGCGGTATCTCACACATATTGCACGGACTCACATGATGCCACCATGGTTAGCTCATGTTAATGCAAAG ACTGGGACCCCGGTAAATGCCACTGTTGTCATGCTTGCTGCAACTGCTATCATTGCCTTTTTCACCAAGCTTGATATTCTATCCAACCTTCTTTCCATCT CCACACTGTTTATCTTCATGCTTGTGGCTGTGTCTCTTCTTGTGCGCCGCTACTATGTTAGTGGTGTGACAACACCAGTAAATCGCGTCAAGCTCATTGT GTGCATTGTGGCCATTCTTGTTTCTTCAATTGCAACAGCTCTTATTTGGGGTACGTCCGATCAAGCTAGTTGGATTGGGTATGTGATCACCATACCGATA TGGTTCTTTGCTACTTTAGCACTCAAGATTTCTGTCCCACAAGCAAGGGATCCAAAACTATGGGGTGTTCCGTTGGTGCCATGGCTACCATCTGCTTCAA TTCTCATCAACATGTTTCTTCTGGGATCAATAGACGTGCAATCATTTAAAAGATTTGCTGTATGGACTGGAATTTTGTTGATATACTACTTGCTGTTTGG ATTACATGCCTCCTATGACACAGCAAAGGCATCGGGAGAGAACAAGGATGAGGGTGGTTTCAAGAATGTTGAAGACGGCACTGTCTCTTCCCAGAATGAC GCCTTGTGA
AA sequence Show only first row Show all	>Potri.015G133100.1 pacid=42775923 polypeptide=Potri.015G133100.1.p locus=Potri.015G133100 ID=Potri.015G133100.1.v4.1 annot-version=v4.1 MGGGDIHIDHQEEGLRRRGCGCSCSKNDFLPEESFQSFGNYLQALKETPMRFKDRLLTRSKDTTEIHEIKARSEHEMKKTLTWWDLIWFGIGAVIGAGIF VLTGLEAREHAGPAVVLSYVVSGVSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGDFMAFIAAGNILLEYVIGGAAVSRAWTSYFATLCNHKPDDFRIIA HSLPDDYGHLDPIAVLVGVVICILAVLSTKGSSRFNYVASIIHVVVILFIIVAGLAKADTKNYADFAPNGAHGIFTASAVLFFAYVGFDAVSTMAEETKN PARDIPIGLVGSMAITTLAYCLLAVTLCLMVPYKMIDVDAPFSVAFESVGWGWAKYIVAAGALKGMTTVLLVSAVGQARYLTHIARTHMMPPWLAHVNAK TGTPVNATVVMLAATAIIAFFTKLDILSNLLSISTLFIFMLVAVSLLVRRYYVSGVTTPVNRVKLIVCIVAILVSSIATALIWGTSDQASWIGYVITIPI WFFATLALKISVPQARDPKLWGVPLVPWLPSASILINMFLLGSIDVQSFKRFAVWTGILLIYYLLFGLHASYDTAKASGENKDEGGFKNVEDGTVSSQND AL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Potri.015G133100 [exp]	0	1	AAT1.2,PtrCAT12
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Potri.018G138100 [exp]	5.47	0.9027
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.009G108600 [exp]	5.91	0.9144
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231300 [exp]	6.00	0.9106
AT1G18870		ATICS2, ICS2	ARABIDOPSIS ISOCHORISMATE SYNT...		Potri.012G070000 [exp]	6.32	0.8994
AT1G70250			receptor serine/threonine kina...		Potri.004G014250 [exp]	7.93	0.8976
AT3G14470			NB-ARC domain-containing disea...		Potri.006G272066 [exp]	8.12	0.9300
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Potri.004G020400 [exp]	8.48	0.9121	ATML1.2
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.017G009100 [exp]	9.89	0.9046
AT4G19160			unknown protein		Potri.001G193400 [exp]	10.39	0.8996
AT2G20740			Tetraspanin family protein (.1...		Potri.018G038400 [exp]	14.96	0.8800

Compare expression of checked genes

Potri.015G133100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.