Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52020 132 / 8e-38 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G12630 122 / 2e-34 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G36450 101 / 2e-26 AP2_ERF HRD HARDY, Integrase-type DNA-binding superfamily protein (.1) AT4G25490 99 / 6e-25 AP2_ERF DREB1B, CBF1, ATCBF1 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) AT4G25480 96 / 9e-24 AP2_ERF CBF3, DREB1A, ATCBF3 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) AT4G25470 93 / 9e-23 AP2_ERF DREB1C, FTQ4, CBF2, ATCBF2 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) AT5G11590 91 / 8e-22 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1) AT5G51990 91 / 9e-22 AP2_ERF CBF4, DREB1D DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) AT2G44940 86 / 1e-19 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G25810 85 / 1e-19 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G134000 [exp] 239 / 7e-79 AT5G52020 123 / 5e-34 Integrase-type DNA-binding superfamily protein (.1) Potri.003G121200 [exp] 154 / 4e-47 AT5G52020 149 / 2e-45 Integrase-type DNA-binding superfamily protein (.1) Potri.001G110500 [exp] 154 / 6e-47 AT5G52020 152 / 1e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.001G110800 [exp] 114 / 1e-30 AT4G25470 164 / 4e-50 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) Potri.016G018600 [exp] 108 / 1e-28 AT2G36450 135 / 7e-40 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.006G021000 [exp] 104 / 2e-27 AT2G36450 122 / 5e-35 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.012G134100 [exp] 100 / 2e-25 AT5G51990 197 / 4e-63 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.001G110700 [exp] 97 / 3e-24 AT5G51990 201 / 8e-65 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.015G136400 [exp] 95 / 3e-23 AT5G51990 189 / 2e-60 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031655 [exp] 145 / 2e-43 AT5G52020 143 / 7e-43 Integrase-type DNA-binding superfamily protein (.1) Lus10031652 [exp] 144 / 3e-43 AT5G52020 150 / 5e-46 Integrase-type DNA-binding superfamily protein (.1) Lus10027413 [exp] 138 / 1e-40 AT1G12630 146 / 3e-44 Integrase-type DNA-binding superfamily protein (.1) Lus10031656 [exp] 137 / 4e-40 AT5G52020 148 / 5e-45 Integrase-type DNA-binding superfamily protein (.1) Lus10017830 [exp] 109 / 6e-29 AT5G52020 137 / 7e-40 Integrase-type DNA-binding superfamily protein (.1) Lus10024492 [exp] 105 / 2e-27 AT5G52020 140 / 3e-41 Integrase-type DNA-binding superfamily protein (.1) Lus10027414 [exp] 97 / 9e-25 AT4G25490 208 / 1e-68 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Lus10031654 [exp] 95 / 1e-23 AT4G25490 201 / 9e-66 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Lus10001871 [exp] 93 / 1e-22 AT1G12610 193 / 4e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10006334 [exp] 93 / 1e-22 AT1G12610 193 / 3e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.015G136300.1 pacid=42774900 polypeptide=Potri.015G136300.1.p locus=Potri.015G136300 ID=Potri.015G136300.1.v4.1 annot-version=v4.1 ATGGCCAATCCTAAGCCCCAAGCTGACCAATTACCACCACTTCACTCTCCAATCCTGATCCCGTCTCCGATCAGATCTTCGGGTCAGCCCTTTAGTTCAA GGCATGATGAACATCCACCGAGGCTTATTCGATCGCCCATTGGGTTTTCGAGTCAGCCCATGAGTGGAAGGCATGGTGACCAATCACCGAGGCGCCCTAT TCGACCACCGGGTGGTTCATCGGCTCAGCCCGCAAGCGGAAGACACCCGACTTTTAAAGGTGTTAGGTTACGGAGTGGAAAATGGGTATCCGAGATCCGG GAACCACGTAAAACCACGCGTGTATGGCTCGGTACGTATCCAACTCCTGAGATGGCAGCCACCGCCTATGATGTGGCTGCTCTAGCGCTTAAAGGCACCA ACACGCCACTGAATTTCCCGGAATCAATCCTTTCCTATCCAACACCAGCCTCAGCATCCCCTGGTGATATAAGGGCTGCAGCTGCTAGTGCAGCATCAGC CAGGTCACCCAAGCGTGAAAGTGGGCCAAACCCTGAGATGGGCCAGCCTGAAACAGAAGGCTCATCATCTATTATCACTGCTGATGTTCAATCAGGACAG GAAATTTTCGACGAGGAAGAACTTTTAAACATGCCCAATTTGCTAGTTGACATGGCAGGAGGAATGCTAGTAAGCCCACCAAGAATAAACACACTATCTT CTGATGATTCACCAGGGAGTTCCGATGCTGAAAGCCTATGGTCCTACCACTAA
AA sequence Show only first row Show all	>Potri.015G136300.1 pacid=42774900 polypeptide=Potri.015G136300.1.p locus=Potri.015G136300 ID=Potri.015G136300.1.v4.1 annot-version=v4.1 MANPKPQADQLPPLHSPILIPSPIRSSGQPFSSRHDEHPPRLIRSPIGFSSQPMSGRHGDQSPRRPIRPPGGSSAQPASGRHPTFKGVRLRSGKWVSEIR EPRKTTRVWLGTYPTPEMAATAYDVAALALKGTNTPLNFPESILSYPTPASASPGDIRAAAASAASARSPKRESGPNPEMGQPETEGSSSIITADVQSGQ EIFDEEELLNMPNLLVDMAGGMLVSPPRINTLSSDDSPGSSDAESLWSYH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Potri.015G136300 [exp]	0	1
AT3G06890			unknown protein		Potri.010G013100 [exp]	3.87	0.7425
AT4G16820		PLA-I{beta]2	phospholipase A I beta 2, alph...		Potri.003G081500 [exp]	18.70	0.6619
AT5G38700			unknown protein		Potri.014G123400 [exp]	22.97	0.6599
AT4G12010			Disease resistance protein (TI...		Potri.019G097100 [exp]	23.83	0.6980
AT3G07510			unknown protein		Potri.014G176000 [exp]	25.69	0.5992
AT5G17680			disease resistance protein (TI...		Potri.019G098500 [exp]	27.29	0.6896
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014304 [exp]	33.98	0.6514
AT5G57580			Calmodulin-binding protein (.1...		Potri.005G020200 [exp]	36.63	0.6379	CBP60.7
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Potri.013G025100 [exp]	41.56	0.5294	Pt-CAX11.1
AT2G01050			zinc ion binding;nucleic acid ...		Potri.017G002400 [exp]	45.21	0.6221

Compare expression of checked genes

Potri.015G136300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.