Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18372 159 / 5e-52 Small nuclear ribonucleoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000241 [exp] 155 / 2e-50 AT4G18372 154 / 9e-50 Small nuclear ribonucleoprotein family protein (.1) Lus10042823 [exp] 155 / 3e-50 AT4G18372 154 / 7e-50 Small nuclear ribonucleoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0527 [poplar] [flax] Sm-like PF01423 [poplar] [flax] LSM LSM domain
Representative CDS sequence Show only first row Show all	>Potri.015G138100.1 pacid=42774794 polypeptide=Potri.015G138100.1.p locus=Potri.015G138100 ID=Potri.015G138100.1.v4.1 annot-version=v4.1 ATGGAGGAGGAGATGGAGATATCGTCATCGACGCAGGCAACTGAGAGCTCTTCCTCTGATATTGTATCTCGAGCTAGGAAATTGCTGTTTCGACGGATGC TAGTTGGAATCAAGGATGGACGGTTTTTCTTAGGAAGCTTTCATTGCATAGACAAACAAGGCAACATCATCCTCCAAGATGCAGTTGAATACCGTAACAC CCATCGATCCTCTCCTTCTCCAATGGAACAACGCTGTCTTGGTCTCATTCTTATACCTTCCTCTTGTCGAACTTCTTGTCATGTCGATTGCTCTATTGAA GAACAGCTCTCCCTTTTGAAGTTTCAATAA
AA sequence Show only first row Show all	>Potri.015G138100.1 pacid=42774794 polypeptide=Potri.015G138100.1.p locus=Potri.015G138100 ID=Potri.015G138100.1.v4.1 annot-version=v4.1 MEEEMEISSSTQATESSSSDIVSRARKLLFRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRNTHRSSPSPMEQRCLGLILIPSSCRTSCHVDCSIE EQLSLLKFQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18372			Small nuclear ribonucleoprotei...		Potri.015G138100 [exp]	0	1
AT1G49245			Prefoldin chaperone subunit fa...		Potri.013G072700 [exp]	2.00	0.7662
AT3G06330			RING/U-box superfamily protein...		Potri.008G196400 [exp]	3.60	0.7269
AT5G05670			signal recognition particle bi...		Potri.002G020900 [exp]	4.00	0.7633
AT4G35100		SIMIP, PIP3A, P...	PLASMA MEMBRANE INTRINSIC PROT...		Potri.009G136600 [exp]	5.65	0.7522
AT3G48880			RNI-like superfamily protein (...		Potri.016G019500 [exp]	6.48	0.7528
AT2G19580		TET2	tetraspanin2 (.1)		Potri.006G150400 [exp]	13.85	0.6544
AT5G42560			Abscisic acid-responsive (TB2/...		Potri.002G023500 [exp]	14.28	0.6026
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Potri.003G087800 [exp]	15.19	0.7460	Pt-TOM2.1
AT4G18400			unknown protein		Potri.004G133260 [exp]	15.29	0.6488
AT2G40435			unknown protein		Potri.016G132600 [exp]	24.18	0.7395

Compare expression of checked genes

Potri.015G138100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.