Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25560 192 / 8e-60 MYB LAF1, ATMYB18 LONG AFTER FAR-RED LIGHT 1, myb domain protein 18 (.1) AT5G52260 187 / 3e-58 MYB ATMYB19 myb domain protein 19 (.1) AT3G48920 185 / 3e-57 MYB ATMYB45 myb domain protein 45 (.1) AT1G57560 175 / 7e-53 MYB ATMYB50 myb domain protein 50 (.1) AT5G26660 172 / 4e-51 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1) AT4G01680 167 / 1e-50 MYB ATMYB55 myb domain protein 55 (.1.2.3) AT3G13890 170 / 2e-50 MYB ATMYB26, MS35 MALE STERILE 35, myb domain protein 26 (.1.2) AT1G09540 166 / 6e-49 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) AT3G12720 163 / 2e-48 MYB ATMYB67, AtY53 myb domain protein 67 (.1) AT3G08500 164 / 4e-48 MYB ATMYB83 myb domain protein 83 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G140500 [exp] 437 / 3e-156 AT5G52260 189 / 9e-59 myb domain protein 19 (.1) Potri.015G082700 [exp] 176 / 1e-52 AT1G57560 254 / 2e-82 myb domain protein 50 (.1) Potri.012G084100 [exp] 174 / 9e-52 AT5G26660 253 / 1e-81 myb domain protein 86 (.1) Potri.005G001600 [exp] 174 / 3e-51 AT1G09540 376 / 1e-128 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.013G001000 [exp] 173 / 9e-51 AT1G09540 382 / 1e-130 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.014G111200 [exp] 173 / 1e-50 AT4G01680 282 / 3e-93 myb domain protein 55 (.1.2.3) Potri.003G155700 [exp] 170 / 1e-50 AT3G12720 240 / 1e-77 myb domain protein 67 (.1) Potri.001G197000 [exp] 170 / 2e-50 AT3G13890 256 / 1e-82 MALE STERILE 35, myb domain protein 26 (.1.2) Potri.009G053900 [exp] 169 / 2e-50 AT5G12870 224 / 8e-72 myb domain protein 46 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039213 [exp] 255 / 3e-84 AT4G25560 195 / 4e-61 LONG AFTER FAR-RED LIGHT 1, myb domain protein 18 (.1) Lus10027458 [exp] 251 / 9e-83 AT4G25560 190 / 4e-59 LONG AFTER FAR-RED LIGHT 1, myb domain protein 18 (.1) Lus10005740 [exp] 217 / 2e-69 AT5G52260 194 / 3e-61 myb domain protein 19 (.1) Lus10005739 [exp] 213 / 6e-68 AT5G52260 186 / 4e-58 myb domain protein 19 (.1) Lus10027456 [exp] 201 / 5e-63 AT5G52260 184 / 2e-56 myb domain protein 19 (.1) Lus10038022 [exp] 169 / 5e-49 AT4G01680 273 / 8e-90 myb domain protein 55 (.1.2.3) Lus10031281 [exp] 166 / 5e-49 AT3G08500 228 / 1e-72 myb domain protein 83 (.1) Lus10015608 [exp] 167 / 7e-49 AT3G13890 249 / 8e-80 MALE STERILE 35, myb domain protein 26 (.1.2) Lus10002559 [exp] 164 / 4e-48 AT5G12870 225 / 7e-72 myb domain protein 46 (.1) Lus10038395 [exp] 161 / 1e-47 AT3G12720 233 / 2e-75 myb domain protein 67 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.015G143400.2 pacid=42775234 polypeptide=Potri.015G143400.2.p locus=Potri.015G143400 ID=Potri.015G143400.2.v4.1 annot-version=v4.1 ATGGGGTGCAAGTCATCTGACATGCCAAAGCTAAAGCCAAAGCCAAAGCACAGGAAAGGCTTGTGGTCACCTGAAGAAGATCAAAGGCTCAGAAACTATG TCCTTAAACATGGCCATGGATGTTGGAGCTCTGTCCCCATTAATGCTGGCTTGCAGAGGAATGGGAAGAGCTGCAGACTAAGATGGATTAATTACTTGAG ACCAGGATTAAAAAGAGGGACGTTTTCTGCACAAGAAGAGGAGACAATCCTGGCCCTTCATCACATGTTAGGCAACAAGTGGTCTCAGATAGCACAGCAT TTGCCTGGAAGAACAGATAATGAGATAAAGAATCATTGGCATTCCTATTTGAAGAAAAATTTGCTCAAAGACGAAGGGATGGAGTCTTTGAAAAGAACAA AATCTGACAGCTCAAACTCAGACATTATGGAACTTTCACCATCTCCCAAGAGACTCAAAATGCAAGCTTCAAGTTTTGAGTCATCAATGAGTGCAGAAAA ATCATCAGCTGATATCAACCGGTCAGTTCCGCAGATGTTTGAGTCTCCTAACGAACCTAAAGGAAGCTCCTTATTACCAAAGGTTATGTTTGCAGAGTGG CTTTCACTTGAAAGCTTCGCGAGTTTAGGTGAGCCTATGGATTCAAAGACTACACTTGATCATAATACAATCTTCCAAGACAATTTCTTGCATGATTACT TACTGGATGAAAGAGCATTTGGCGGCGAGTATCATAATTCACTAAGCGATGGTTCGAGCGGCGACATTTTTAGTTCAGAATTCAGGTTTGAGAGCCAGAG TCCAGGGAATGAGTTTGATTTTAGCTCTGGAGAGGATTTATGTAGTGACTTCAACTTGAGCAACATTAGTGATGTGATGTACATATGA
AA sequence Show only first row Show all	>Potri.015G143400.2 pacid=42775234 polypeptide=Potri.015G143400.2.p locus=Potri.015G143400 ID=Potri.015G143400.2.v4.1 annot-version=v4.1 MGCKSSDMPKLKPKPKHRKGLWSPEEDQRLRNYVLKHGHGCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGTFSAQEEETILALHHMLGNKWSQIAQH LPGRTDNEIKNHWHSYLKKNLLKDEGMESLKRTKSDSSNSDIMELSPSPKRLKMQASSFESSMSAEKSSADINRSVPQMFESPNEPKGSSLLPKVMFAEW LSLESFASLGEPMDSKTTLDHNTIFQDNFLHDYLLDERAFGGEYHNSLSDGSSGDIFSSEFRFESQSPGNEFDFSSGEDLCSDFNLSNISDVMYI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Potri.015G143400 [exp]	0	1
AT4G10350	NAC	BRN2, NST4, ANA...	BEARSKIN 2, NAC domain contain...		Potri.013G092400 [exp]	2.23	0.9753	NAC064
AT3G10720			Plant invertase/pectin methyle...		Potri.008G011100 [exp]	2.82	0.9703
AT4G34419			unknown protein		Potri.004G141600 [exp]	4.47	0.9435
AT1G53130		GRI	GRIM REAPER, Stigma-specific S...		Potri.011G118600 [exp]	4.47	0.9650
AT1G51190	AP2_ERF	PLT2	PLETHORA 2, Integrase-type DNA...		Potri.001G018400 [exp]	4.58	0.9677	RAP21
AT4G38470		STY46	serine/threonine/tyrosine kina...		Potri.005G246400 [exp]	5.91	0.9604
AT2G45220			Plant invertase/pectin methyle...		Potri.002G145500 [exp]	6.00	0.9676	Pt-PE9.2
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.011G028100 [exp]	6.00	0.9526
AT4G37160		SKS15	SKU5 similar 15 (.1)		Potri.007G038200 [exp]	7.74	0.9525
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.001G036700 [exp]	8.48	0.9642

Compare expression of checked genes

Potri.015G143400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.