Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13640 195 / 2e-60 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT3G24120 193 / 7e-60 GARP Homeodomain-like superfamily protein (.1.2) AT1G79430 161 / 9e-47 GARP WDY, APL WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) AT3G04030 153 / 2e-43 GARP Homeodomain-like superfamily protein (.1.2.3) AT5G18240 148 / 2e-41 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5) AT1G69580 146 / 4e-41 GARP Homeodomain-like superfamily protein (.1.2) AT5G45580 143 / 7e-41 GARP Homeodomain-like superfamily protein (.1) AT3G12730 138 / 2e-39 GARP Homeodomain-like superfamily protein (.1) AT2G01060 129 / 5e-35 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT3G04450 117 / 9e-30 GARP Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G054800 [exp] 221 / 2e-70 AT4G13640 338 / 6e-117 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.001G314800 [exp] 217 / 7e-69 AT4G13640 345 / 2e-119 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.008G081800 [exp] 160 / 2e-46 AT1G79430 335 / 6e-114 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.010G174100 [exp] 154 / 4e-44 AT1G79430 356 / 4e-122 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.001G133400 [exp] 150 / 2e-43 AT5G45580 220 / 2e-71 Homeodomain-like superfamily protein (.1) Potri.003G100100 [exp] 146 / 6e-42 AT5G45580 240 / 6e-79 Homeodomain-like superfamily protein (.1) Potri.008G087600 [exp] 145 / 4e-41 AT1G69580 276 / 2e-91 Homeodomain-like superfamily protein (.1.2) Potri.013G060200 [exp] 147 / 5e-41 AT3G04030 462 / 3e-162 Homeodomain-like superfamily protein (.1.2.3) Potri.019G032700 [exp] 144 / 7e-40 AT3G04030 449 / 2e-157 Homeodomain-like superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038735 [exp] 244 / 2e-80 AT3G24120 177 / 8e-55 Homeodomain-like superfamily protein (.1.2) Lus10039123 [exp] 241 / 5e-79 AT3G24120 173 / 5e-53 Homeodomain-like superfamily protein (.1.2) Lus10016676 [exp] 204 / 6e-64 AT4G13640 380 / 2e-133 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10007132 [exp] 204 / 9e-64 AT4G13640 390 / 3e-137 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10001844 [exp] 167 / 7e-48 AT1G79430 286 / 3e-93 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10001754 [exp] 164 / 5e-47 AT1G79430 292 / 2e-95 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10037169 [exp] 150 / 5e-43 AT1G69580 252 / 9e-83 Homeodomain-like superfamily protein (.1.2) Lus10002629 [exp] 152 / 8e-43 AT3G04030 440 / 9e-154 Homeodomain-like superfamily protein (.1.2.3) Lus10036758 [exp] 149 / 9e-43 AT1G69580 258 / 9e-85 Homeodomain-like superfamily protein (.1.2) Lus10020264 [exp] 151 / 1e-42 AT3G04030 441 / 4e-154 Homeodomain-like superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain CL0123 [poplar] [flax] PF14379 [poplar] [flax] Myb_CC_LHEQLE MYB-CC type transfactor, LHEQLE motif
Representative CDS sequence Show only first row Show all	>Potri.016G001200.1 pacid=42810669 polypeptide=Potri.016G001200.1.p locus=Potri.016G001200 ID=Potri.016G001200.1.v4.1 annot-version=v4.1 ATGTTGGAGAGCAGGGGGGTTGGAATCGGAGGGATGATTATGGAAGAAATGCATCAAAATCAATCAGGAATTGGAATTGGATTAGGAATGCAAGGAGGAG CCCAAGTTGTGTTGACTTCCGATCCCAAGCCTCGCCTCCGTTGGACTGCCGATCTTCACCAACGCTTCGTTGACGCTGTCTCTCAGCTCGGCGGTCCCAA TAAAGCCACCCCAAAGGCTATCTTGCGTACAATGAATGTCAAGGGATTGACCCTCTTTCATTTAAAGAGCCACCTTCAGAAATATAGACTGGGTAAGCAA TCGGGGAAGGATATGAGCGACACATTCAAAGATGGATTATCTGGCTCGTATCTCTTAGAAAACCCTTGTACTGGCAACTCTTCTCTGAATATGACAGCTT CTGATGTGAATGAAGGTTATGAAGTCAAAGAGGCATTACGCGCACAAATGGAAGTGCAAAGCAAATTGCATCTACAAGTGGAGGCTGAGAAGCACTTGCA TATTCGCCTGGATGCAGAACGAAGATATCTGGCCATGCTCGAGAGAGCTTGTAAGATGCTTGCCGATCAATTTATTGGTGCTGCAGTTATTGATACAGAT AGCCAGAAGGGGTTGGGAACCAGGACAACTAGAATTGCCTCTCTTGATCCACTTGGCTTTTACTCCTTACAAACCTCTGAGGTGGCTGAAGTGCATGGTC CAGAGGATGTACTGCCCGGTCTTCATCACCAAGGGGCTGATTGTTCTACCGAAAGCTGCCTGACTTCTAACGAGAGTCCTGGAGGTTTGAATTTGGAAGG ATCTCCAGCTGGAGGGAAGAAAGGGATGCTGAGCTTGGAGTCAGCAACATCTTTGATCTGGGGTGAAACAAGAATGGGAAATGCAGAAGTTAATGCGACC CAAGTCAATTCCTATGGCGCCTCTCTGTATGGAATATGGAATTGA
AA sequence Show only first row Show all	>Potri.016G001200.1 pacid=42810669 polypeptide=Potri.016G001200.1.p locus=Potri.016G001200 ID=Potri.016G001200.1.v4.1 annot-version=v4.1 MLESRGVGIGGMIMEEMHQNQSGIGIGLGMQGGAQVVLTSDPKPRLRWTADLHQRFVDAVSQLGGPNKATPKAILRTMNVKGLTLFHLKSHLQKYRLGKQ SGKDMSDTFKDGLSGSYLLENPCTGNSSLNMTASDVNEGYEVKEALRAQMEVQSKLHLQVEAEKHLHIRLDAERRYLAMLERACKMLADQFIGAAVIDTD SQKGLGTRTTRIASLDPLGFYSLQTSEVAEVHGPEDVLPGLHHQGADCSTESCLTSNESPGGLNLEGSPAGGKKGMLSLESATSLIWGETRMGNAEVNAT QVNSYGASLYGIWN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Potri.016G001200 [exp]	0	1
AT5G27830			unknown protein		Potri.013G014800 [exp]	9.16	0.6659
AT1G03250			unknown protein		Potri.019G046400 [exp]	9.64	0.6489
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Potri.004G018200 [exp]	13.03	0.6346
AT3G48330		ATPIMT1, PIMT1	Arabidopsis thaliana protein-l...		Potri.015G086600 [exp]	28.61	0.6177
AT2G25530			AFG1-like ATPase family protei...		Potri.006G252300 [exp]	31.12	0.6127
AT5G47540			Mo25 family protein (.1)		Potri.016G011100 [exp]	50.19	0.5677
AT3G05920			Heavy metal transport/detoxifi...		Potri.002G032800 [exp]	87.98	0.5711
AT5G58200			Calcineurin-like metallo-phosp...		Potri.006G188200 [exp]	96.63	0.5939
AT4G36960			RNA-binding (RRM/RBD/RNP motif...		Potri.005G138600 [exp]	99.91	0.5501
AT1G44790			ChaC-like family protein (.1)		Potri.005G176300 [exp]	104.64	0.5611

Compare expression of checked genes

Potri.016G001200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.