Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16420 601 / 0 PRZ1, ADA2B PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) AT3G07740 417 / 2e-140 HXA2, HXA02, HAC10, ATADA2A, ADA2A homolog of yeast ADA2 2A (.1.2.3.4) AT4G34430 63 / 5e-10 ATSWI3D, CHB3 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) AT1G21700 60 / 4e-09 CHB4, ATSWI3C SWITCH/sucrose nonfermenting 3C (.1) AT2G33610 45 / 0.0002 CHB2, ATSWI3B CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) AT1G79000 45 / 0.0002 ATHAC1, ATHPCAT2, PCAT2, HAC1 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G017300 [exp] 882 / 0 AT4G16420 640 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.014G166300 [exp] 561 / 0 AT3G07740 582 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4) Potri.004G135400 [exp] 122 / 2e-32 AT4G16420 102 / 9e-26 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.002G080600 [exp] 59 / 5e-09 AT1G21700 679 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.005G180800 [exp] 59 / 8e-09 AT1G21700 692 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.009G114900 [exp] 59 / 8e-09 AT4G34430 727 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.004G153300 [exp] 57 / 3e-08 AT4G34430 711 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017553 [exp] 696 / 0 AT3G07740 625 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4) Lus10000540 [exp] 649 / 0 AT3G07740 499 / 2e-174 homolog of yeast ADA2 2A (.1.2.3.4) Lus10006383 [exp] 499 / 7e-172 AT3G07740 581 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4) Lus10023583 [exp] 82 / 6e-16 AT4G34430 704 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10040472 [exp] 79 / 7e-15 AT4G34430 694 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10026334 [exp] 72 / 1e-12 AT1G21700 556 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10042329 [exp] 70 / 4e-12 AT4G34430 652 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10029695 [exp] 50 / 7e-06 AT1G21700 666 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10042734 [exp] 49 / 9e-06 AT1G21700 736 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10016043 [exp] 44 / 0.0003 AT2G33610 429 / 4e-147 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain CL0006 [poplar] [flax] C1 PF00569 [poplar] [flax] ZZ Zinc finger, ZZ type
Representative CDS sequence Show only first row Show all	>Potri.016G007600.1 pacid=42809989 polypeptide=Potri.016G007600.1.p locus=Potri.016G007600 ID=Potri.016G007600.1.v4.1 annot-version=v4.1 ATGGGTCGTTCTCGTGGGAATTTTCACTCTACTGATGAAGACCCTACTCAGAGATCAAGAAGGAAAAAGAACGCTGCAAGTGGAGAGAATTCGGAATCTT CATCGGCAGGCCAAGGAAGTAGTGATGGTAAAAGGGCATTATACCATTGCAATTATTGCAATAAAGACATAACAGGGAAGACCCGTATCAAATGTGCTGT GTGCCCTGATTTTGACCTATGTTTAGAGTGCTTCTCTGTAGGAGCTGAGGTTACGCCTCATAAAAGCAATCACCCTTACAGGGTTATGGATAACCTATCT TTCCCACTTATTTGCCCTGACTGGAATGCAGATGAAGAAATACTGCTTCTAGAGGGAATTGAAATGTATGGATTGGGGAATTGGGCAGAAGTTGCTGAGC ATGTGGGGACAAAGAATAAAGAAACATGTATCAAACACTATAATAGCGTATACTTGCAATCCCAGTTCTTCCCTCTCCCGGACATGTCTCATGTTGTTGG GAAAAATAGAAAGGAGCTTCTTGCTATGGCCAAGGGACATAGTGAGGACAAAAAAGGTACTTCTATGCTTGGGGAGCATACTTTGAAGGAAGAATCTCCA TTTTCTCCTTCAAGAGTCAAGGTCGAAGAAATGCATAAAGTAGGTTCCTCTGGCCGATTATCAACATTAAATTCAGAGTTAGAAACTGCGAGCCGTCCTA ATAGCGCAAATTCTGCAGCAACAGCTGCTAATAAGAAGGCATCAAGCATGGCCCGAATTAATGATGGACCCGGTGTTAAGGTGGAAGATCCTCAAGTGGA CCGAAATTTCAAGGGGAAGAAACCAAGTTCCTCAGGGAGTGAGGGTCCATCATTAATGGAGTTGAGCGGTTATAATCCCAAGAGGCAGGAGTTTGATCCT GAATATGACAATGATGCTGAGCAGTTGCTGGCTGAGATGGAATTTAAAGATAATGACACTGAGGAAGAGCGTGAGCTGAAGTTGCGAGTGCTGCGTATAT ATTCAAGGAGGCTTGATGAGAGAAAGCGCAGAAAAGATTTCATTCTTGAAAGAAATCTACTACATCCAAGTCCTTTCGAAAAGGACTTGACTCCAGAAGA GAGGGCATTATGTCGGCGTTTTGACCCTTTCATGCGTTTTCATTCCAAGGAAGAGCATGAAGAACTGCTTCGGGCTGTTGTCAAGGAGCACTGGATGCTG AAAAGGGTCGAAGAGCTGAAGGATGCCCAAGTGGCTGGTTGCCGCACAGCAGTTGAGGCAGACAGGTATCTTGAGCACAAGAGAAAAATAGAAGCTGAGG AAACTTCCAGGAGACTGAAAGACAATGCTCAGATTGGTCCTAGCAGTCAGGGTGCTCCCAATGCATTCATGTCTCCAGACTCTGTTGGGAAGGATTCAAG CACCAGACCTGCAGGACAGGGCTCTTCTAGCTATGCCAATGATTTGGACATAATGGGCTTTTATGAAACGCAGCTACTGTCTGAAACTGAAAAACGGCTA TGCTGCGAGATTCACCTACCTCCACCTGTCTACCTCAAGATGCAGGAGGTGATGACCAAAGAGATCTTCAGCGGTAACATCACTAAGAAATCAGATGCTC ACCCCTTGTTCAAGATTGAAGCAAGCAAAGTTGATGGGGTGTATGATATGCTTGTGAAGAAGGGGATTGCTCAACCTTGA
AA sequence Show only first row Show all	>Potri.016G007600.1 pacid=42809989 polypeptide=Potri.016G007600.1.p locus=Potri.016G007600 ID=Potri.016G007600.1.v4.1 annot-version=v4.1 MGRSRGNFHSTDEDPTQRSRRKKNAASGENSESSSAGQGSSDGKRALYHCNYCNKDITGKTRIKCAVCPDFDLCLECFSVGAEVTPHKSNHPYRVMDNLS FPLICPDWNADEEILLLEGIEMYGLGNWAEVAEHVGTKNKETCIKHYNSVYLQSQFFPLPDMSHVVGKNRKELLAMAKGHSEDKKGTSMLGEHTLKEESP FSPSRVKVEEMHKVGSSGRLSTLNSELETASRPNSANSAATAANKKASSMARINDGPGVKVEDPQVDRNFKGKKPSSSGSEGPSLMELSGYNPKRQEFDP EYDNDAEQLLAEMEFKDNDTEEERELKLRVLRIYSRRLDERKRRKDFILERNLLHPSPFEKDLTPEERALCRRFDPFMRFHSKEEHEELLRAVVKEHWML KRVEELKDAQVAGCRTAVEADRYLEHKRKIEAEETSRRLKDNAQIGPSSQGAPNAFMSPDSVGKDSSTRPAGQGSSSYANDLDIMGFYETQLLSETEKRL CCEIHLPPPVYLKMQEVMTKEIFSGNITKKSDAHPLFKIEASKVDGVYDMLVKKGIAQP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16420		PRZ1, ADA2B	PROPORZ1, homolog of yeast ADA...		Potri.016G007600 [exp]	0	1
AT1G80670		RAE1	RNA export factor 1, Transduci...		Potri.003G180000 [exp]	10.19	0.7510
AT2G04340			unknown protein		Potri.001G241100 [exp]	32.37	0.6137
AT4G16460			unknown protein		Potri.016G009800 [exp]	35.42	0.7195
AT5G22050			Protein kinase superfamily pro...		Potri.009G015600 [exp]	60.00	0.6477
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Potri.015G122800 [exp]	84.50	0.6701
AT1G60080			3'-5'-exoribonuclease family p...		Potri.016G055600 [exp]	125.67	0.6344
AT5G04520			Protein of unknown function DU...		Potri.010G233000 [exp]	157.73	0.6367

Compare expression of checked genes

Potri.016G007600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.