Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17230 676 / 0 GRAS SCL13 SCARECROW-like 13 (.1) AT5G48150 527 / 0 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G50600 524 / 0 GRAS SCL5 scarecrow-like 5 (.1) AT2G04890 464 / 4e-161 GRAS SCL21 SCARECROW-like 21 (.1) AT1G21450 390 / 2e-129 GRAS SCL1 SCARECROW-like 1 (.1) AT1G07530 221 / 2e-63 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT1G14920 214 / 1e-62 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT1G66350 213 / 3e-62 GRAS RGL1 RGA-like 1 (.1) AT3G03450 212 / 1e-61 GRAS RGL2 RGA-like 2 (.1) AT2G01570 205 / 9e-59 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G016200 [exp] 1032 / 0 AT4G17230 641 / 0.0 SCARECROW-like 13 (.1) Potri.014G164400 [exp] 650 / 0 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.001G361700 [exp] 574 / 0 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.001G409500 [exp] 463 / 5e-158 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.011G131100 [exp] 451 / 1e-153 AT1G50600 505 / 8e-174 scarecrow-like 5 (.1) Potri.005G186500 [exp] 395 / 3e-131 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.002G073400 [exp] 392 / 3e-130 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.001G326000 [exp] 254 / 3e-76 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.017G125200 [exp] 229 / 2e-67 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000539 [exp] 784 / 0 AT4G17230 617 / 0.0 SCARECROW-like 13 (.1) Lus10017554 [exp] 763 / 0 AT4G17230 612 / 0.0 SCARECROW-like 13 (.1) Lus10016596 [exp] 573 / 0 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10012323 [exp] 557 / 0 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10006369 [exp] 541 / 0 AT5G48150 633 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10035840 [exp] 448 / 5e-152 AT5G48150 498 / 2e-172 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10036623 [exp] 425 / 4e-144 AT5G48150 486 / 9e-169 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10003772 [exp] 386 / 2e-132 AT5G48150 439 / 2e-154 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10042776 [exp] 379 / 3e-125 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10029747 [exp] 378 / 8e-125 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.016G009700.2 pacid=42809707 polypeptide=Potri.016G009700.2.p locus=Potri.016G009700 ID=Potri.016G009700.2.v4.1 annot-version=v4.1 ATGCAAACCTCTCAGAAACACCGATCAGCTGGTATCCACAGGTTTTACCACCAGCCAGTGCAAGAGATCGATCCATATGGTTTATCTCATATCCAAATTT TAGACAGCAATATGTATTCAGATGGTGGCAGCCAAGGAGCTGCAATTTCCTTTCAGACAGATCAAGGAGAATTCTTTACCTTGGAATCATCTTCAGCAAC TGCTGGTTTCGTTAACTATGATTCTCCTGCTGCCAGCGTCTCATCCAACAGAAGCCCCTTTTCACCCCAGGGTTCTCATTCATGCATTTCTGATCCTCAT CATTCCCCTGACACTGTATATGGATCTCCATTGAGTGGATCATCCTCTGCTGATGAGGACATTATATTGAGGCAGAAATTAAGGGAGTTGGAAATTTCAT TGCTCGGGCCTGAATCTGATATTACCGACAGTGGGAGTTTTTGCTTTGTGAGTGGAGGATACCAAGCAGAATCATCTGCAAGTTGGGACTGGAATCAAAT GATGGAAGTGATCCCTAGGTTAGATCTTAAGCATGTGCTTCTTGCCTGTGCTGATGCAGTATCAAATGCTGATATACAAAGAGCAGCAGGTCTAATGCAT GTCTTGGACCAAATGGTGTCAGTCTCTGGAGAGCCGATCCAGCGGTTGGGTGCTTATATGTTGGAAGGCCTTAGGGCAAGGTTGGAACTCTCAGGAAGTA AAATCTACAGAGCCTTGAAGTGTGAAGCACCAATTAGCTCAGATCTGATGACTTACATGGGTATTCTCTATCAGATCTGCCCATATTGGAAGTTTGCATA CACTTCAGCTAATGTTGTCATTCAAGAAGCCGTGGAATACGAACCCAGAATTCATATCATCGACTTCCAGATTGCACAGGGAAGTCAGTGGAGTGTTCTA ATGCAGATGCTTGCTTATCGGCCAGGTGGGCCCCCAGTAATCCGCATAACTGGTGTTGATGATTCTCAATCTGCTCATGCTCGTGGTGGAGGACTTGATA TTGTGGGTCAAAGGCTGTCAAAAGTCGCAGAGGAATGCAATGTGCCATTTGAGTTCCATGATGTTGCCATGGATGGTTGTGAGGTTCAACTGGAACATCT CAGGGTCCAACCTGGGGAAGCTGTGGTTGTGAATTTTCCTTATGTGTTGCACCACATGCCAGATGAGAGTGTGACCACTTGGAATCACAGAGATAGATTG ATAAGGATGGTGAAGAGTTTGTCACCAAGGATTGTGACCCTCATTGAGCAAGAATCCAACACCAACACCAAACCATTCTTTCCAAGGTTCATTGAGACTC TAGATTATTATACAGCTATGTTTGAATCAATTGATGTTGGTCGCCCCAAGGATGACAAGCAGAGGATTAATGCAGAGCAGCACTGTGTGGCTCGTGACAT TGTCAATATGATCGCTTGCGAGGAAGCTGAGAGGGTTGAACGGCATGAACTTCTTGCAAAGTGGAGGTCTCGATTTACAATGGCAGGATTCAATCAGTAC CCATTGAGTTCTTCAGTGACTACTGCCGTTAGAGATATGCTAAAGGAATATGACAGGAACTATAGTGTTCAGGAGAGGGACTGGGCTCTTTACCTTCGGT GGCGACATAGAGACATGGCAACTTCTTCTGCCTGGAGTTGA
AA sequence Show only first row Show all	>Potri.016G009700.2 pacid=42809707 polypeptide=Potri.016G009700.2.p locus=Potri.016G009700 ID=Potri.016G009700.2.v4.1 annot-version=v4.1 MQTSQKHRSAGIHRFYHQPVQEIDPYGLSHIQILDSNMYSDGGSQGAAISFQTDQGEFFTLESSSATAGFVNYDSPAASVSSNRSPFSPQGSHSCISDPH HSPDTVYGSPLSGSSSADEDIILRQKLRELEISLLGPESDITDSGSFCFVSGGYQAESSASWDWNQMMEVIPRLDLKHVLLACADAVSNADIQRAAGLMH VLDQMVSVSGEPIQRLGAYMLEGLRARLELSGSKIYRALKCEAPISSDLMTYMGILYQICPYWKFAYTSANVVIQEAVEYEPRIHIIDFQIAQGSQWSVL MQMLAYRPGGPPVIRITGVDDSQSAHARGGGLDIVGQRLSKVAEECNVPFEFHDVAMDGCEVQLEHLRVQPGEAVVVNFPYVLHHMPDESVTTWNHRDRL IRMVKSLSPRIVTLIEQESNTNTKPFFPRFIETLDYYTAMFESIDVGRPKDDKQRINAEQHCVARDIVNMIACEEAERVERHELLAKWRSRFTMAGFNQY PLSSSVTTAVRDMLKEYDRNYSVQERDWALYLRWRHRDMATSSAWS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Potri.016G009700 [exp]	0	1
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.009G033300 [exp]	2.00	0.8851
AT3G14470			NB-ARC domain-containing disea...		Potri.017G133666 [exp]	8.36	0.8411
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Potri.004G161500 [exp]	8.48	0.8027
AT5G47850		CCR4	CRINKLY4 related 4 (.1)		Potri.019G078300 [exp]	9.59	0.8326
AT2G30020			Protein phosphatase 2C family ...		Potri.001G278500 [exp]	12.40	0.8049
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Potri.010G079200 [exp]	13.41	0.8330
AT5G25240			unknown protein		Potri.006G190100 [exp]	18.02	0.7730
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Potri.013G018600 [exp]	19.59	0.7581
AT3G16510			Calcium-dependent lipid-bindin...		Potri.003G160400 [exp]	19.79	0.8173
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Potri.005G026700 [exp]	22.51	0.7917

Compare expression of checked genes

Potri.016G009700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.