Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36450 135 / 5e-40 AP2_ERF HRD HARDY, Integrase-type DNA-binding superfamily protein (.1) AT5G52020 111 / 3e-30 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G25490 111 / 3e-30 AP2_ERF DREB1B, CBF1, ATCBF1 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) AT5G51990 109 / 2e-29 AP2_ERF CBF4, DREB1D DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) AT4G25480 105 / 4e-28 AP2_ERF CBF3, DREB1A, ATCBF3 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) AT4G25470 102 / 1e-26 AP2_ERF DREB1C, FTQ4, CBF2, ATCBF2 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) AT1G12630 99 / 8e-26 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G25810 99 / 2e-25 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1) AT5G11590 95 / 7e-24 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1) AT1G77200 92 / 9e-23 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G021000 [exp] 253 / 4e-86 AT2G36450 122 / 5e-35 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.012G134100 [exp] 127 / 5e-36 AT5G51990 197 / 4e-63 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.003G121200 [exp] 123 / 3e-35 AT5G52020 149 / 2e-45 Integrase-type DNA-binding superfamily protein (.1) Potri.015G136400 [exp] 117 / 3e-32 AT5G51990 189 / 2e-60 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.001G110500 [exp] 115 / 4e-32 AT5G52020 152 / 1e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.015G136300 [exp] 114 / 3e-31 AT5G52020 132 / 7e-38 Integrase-type DNA-binding superfamily protein (.1) Potri.001G110800 [exp] 107 / 2e-28 AT4G25470 164 / 4e-50 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) Potri.001G110700 [exp] 106 / 2e-28 AT5G51990 201 / 8e-65 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.012G134000 [exp] 97 / 2e-24 AT5G52020 123 / 5e-34 Integrase-type DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014376 [exp] 156 / 1e-47 AT2G36450 167 / 2e-52 HARDY, Integrase-type DNA-binding superfamily protein (.1) Lus10023873 [exp] 117 / 2e-33 AT2G36450 121 / 3e-35 HARDY, Integrase-type DNA-binding superfamily protein (.1) Lus10031655 [exp] 114 / 9e-32 AT5G52020 143 / 7e-43 Integrase-type DNA-binding superfamily protein (.1) Lus10017830 [exp] 114 / 2e-31 AT5G52020 137 / 7e-40 Integrase-type DNA-binding superfamily protein (.1) Lus10031652 [exp] 113 / 2e-31 AT5G52020 150 / 5e-46 Integrase-type DNA-binding superfamily protein (.1) Lus10027413 [exp] 112 / 4e-31 AT1G12630 146 / 3e-44 Integrase-type DNA-binding superfamily protein (.1) Lus10024492 [exp] 112 / 2e-30 AT5G52020 140 / 3e-41 Integrase-type DNA-binding superfamily protein (.1) Lus10027412 [exp] 112 / 2e-30 AT5G51990 239 / 3e-80 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Lus10031654 [exp] 108 / 2e-29 AT4G25490 201 / 9e-66 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Lus10027414 [exp] 101 / 8e-27 AT4G25490 208 / 1e-68 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.016G018600.1 pacid=42810254 polypeptide=Potri.016G018600.1.p locus=Potri.016G018600 ID=Potri.016G018600.1.v4.1 annot-version=v4.1 ATGCAAGATTCTCAACCAACCAAAACCTCAAGTCCTAACATTAGCAGTAGCAGTGGCAGTAGCGGTAGCAGAACTGCTTCTGCTTCTGCTTCTGCTGCTG TGATTGCTGGGGCTGTTGCACCTCGAGTTTCAGGCTCCCAACGTGCTTTTCGTGGAGTTCGGCGTAGAAGTAGTGGAAAATGGGTGTCTGAAATTAGAGA GCCTAAGAAGCCTAATAGAATCTGGTTAGGCACATTTCCTAACCCTGAAATGGCCGCTGTTGCTTATGATGTGGCAGCGCTTGCGCTTAAGGGCCAAAAT GCAGACCTTAACTTCCCAAACTCGGCTGCTTCTCTGCCTGTTCCTGCTTCCACTTCGCCACGTGATATTCAGGCGGCTGCAGCCTCTGCAGCTGCTGCTA TTGGTGCTGCAAAGGATGCTTTAGGGATTCCGAATATGGGGGATACTAATCAAATGGAACAAGAAATTACGCCAACGGTCGATGATCAGTTTGTTGATGA GGATTTGATATTTGATATGCCTAATGTTCTTGTGAACATGGCAGAAGGGATGCTTCTTAGCCCTCCTCGCTTGGACATTGCTGGTGATGAGACCACAACC GCCTATGATAACACTGGAGACCAGAACCTTTGGAAATTCCCTTGA
AA sequence Show only first row Show all	>Potri.016G018600.1 pacid=42810254 polypeptide=Potri.016G018600.1.p locus=Potri.016G018600 ID=Potri.016G018600.1.v4.1 annot-version=v4.1 MQDSQPTKTSSPNISSSSGSSGSRTASASASAAVIAGAVAPRVSGSQRAFRGVRRRSSGKWVSEIREPKKPNRIWLGTFPNPEMAAVAYDVAALALKGQN ADLNFPNSAASLPVPASTSPRDIQAAAASAAAAIGAAKDALGIPNMGDTNQMEQEITPTVDDQFVDEDLIFDMPNVLVNMAEGMLLSPPRLDIAGDETTT AYDNTGDQNLWKFP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36450	AP2_ERF	HRD	HARDY, Integrase-type DNA-bind...		Potri.016G018600 [exp]	0	1
AT5G19630			alpha/beta-Hydrolases superfam...		Potri.006G191700 [exp]	2.00	0.8304
AT1G04200			unknown protein		Potri.010G081800 [exp]	2.82	0.8216
					Potri.005G211000 [exp]	5.00	0.8419
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Potri.010G137400 [exp]	13.03	0.7726
AT1G72710		CKL2	casein kinase 1-like protein 2...		Potri.001G197600 [exp]	13.74	0.7934
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Potri.010G067100 [exp]	13.74	0.8287
AT4G28380			Leucine-rich repeat (LRR) fami...		Potri.007G139200 [exp]	15.09	0.8067
AT3G05270			Plant protein of unknown funct...		Potri.005G070400 [exp]	18.16	0.8095
AT2G28110		IRX7, FRA8	IRREGULAR XYLEM 7, FRAGILE FIB...		Potri.009G006500 [exp]	22.04	0.7778
AT3G52480			unknown protein		Potri.016G071700 [exp]	24.97	0.7484

Compare expression of checked genes

Potri.016G018600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.