Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41920 506 / 4e-179 GRAS GRAS family transcription factor (.1) AT3G54220 452 / 2e-154 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT3G03450 196 / 6e-57 GRAS RGL2 RGA-like 2 (.1) AT1G63100 192 / 1e-54 GRAS GRAS family transcription factor (.1) AT5G17490 181 / 1e-51 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G66350 180 / 3e-51 GRAS RGL1 RGA-like 1 (.1) AT2G01570 181 / 5e-51 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G14920 174 / 6e-49 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT1G55580 166 / 3e-46 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT5G66770 163 / 2e-44 GRAS GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G021400 [exp] 713 / 0 AT5G41920 509 / 2e-180 GRAS family transcription factor (.1) Potri.016G143833 [exp] 440 / 2e-147 AT3G54220 679 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.006G114200 [exp] 436 / 5e-146 AT3G54220 639 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.002G036100 [exp] 350 / 2e-116 AT3G54220 441 / 9e-149 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.005G226800 [exp] 342 / 3e-113 AT3G54220 424 / 3e-142 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.001G326000 [exp] 245 / 4e-74 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.001G109400 [exp] 205 / 3e-59 AT1G63100 711 / 0.0 GRAS family transcription factor (.1) Potri.003G122400 [exp] 204 / 4e-59 AT1G63100 696 / 0.0 GRAS family transcription factor (.1) Potri.012G020200 [exp] 190 / 2e-55 AT1G55580 415 / 8e-143 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010462 [exp] 400 / 1e-136 AT5G41920 327 / 2e-108 GRAS family transcription factor (.1) Lus10016496 [exp] 398 / 2e-132 AT3G54220 663 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10040734 [exp] 392 / 2e-130 AT5G41920 410 / 1e-137 GRAS family transcription factor (.1) Lus10003540 [exp] 339 / 7e-112 AT3G54220 423 / 1e-141 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10033912 [exp] 337 / 7e-111 AT3G54220 414 / 6e-138 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10041540 [exp] 251 / 4e-76 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 252 / 5e-76 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10006322 [exp] 200 / 2e-58 AT1G63100 588 / 0.0 GRAS family transcription factor (.1) Lus10029592 [exp] 199 / 4e-57 AT1G63100 669 / 0.0 GRAS family transcription factor (.1) Lus10022418 [exp] 185 / 1e-53 AT1G50420 592 / 0.0 scarecrow-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.016G018900.1 pacid=42810585 polypeptide=Potri.016G018900.1.p locus=Potri.016G018900 ID=Potri.016G018900.1.v4.1 annot-version=v4.1 ATGCTTCAAAGCTTAATTCCTCAGTCTCCGATCAATTCCACAGACCCCAACAATTCTTCCTCCCCCTCCATGAAATCCAAGCGCGCCGCCGCCGACCTTA CCGCCGGTGACTCCTCCGGTGAGGACCCTTCATCTAAACGGGTCAGTTACGAAAAGCCCACCACGGAAATCGACTGCGTAGGAGACGACGGCGGCGAGGC AAGTGGGCTCCGGCTGCTCGGGCTCTTGCTGCAATGTGCGGAGTGTGTTGCGATGGATAATCTAAATGACGCGACGGACCTTTTGCCGGAGATAGCGGAG CTTTCGTCGCCGTTTGGATCGTCGCCGGAGAGAGTGGGAGCGTACTTTGCACATGCTTTGCAGGCGCGTGTGGTTGGTTCTTGCCTCGGTACGTACTCAC CACTCGTGTCAAAATCAGTAACGCTAACTCAGTCGCAGAGATTATTCAATGCTTTGCAGTCATATAATTCAATCAGCCCTCTGGTCAAATTCTCTCATTT CACAGCTAATCAAGCGATTTTCCAAGCTTTGGACGGTGAAGATCGTGTCCACGTTATCGATTTAGATATAATGCAAGGACTTCAATGGCCAGGATTGTTT CATATCTTAGCTTCTAGGCCTAAAAAGATTCGGTCCATGAGAATTACCGGGTTTGGATCTTCATCGGAGTTGCTTGAGTCAACCGGGAGGCGACTCGCCG ATTTCGCGAGCTCACTCGGGCTCCCCTTTGAGTTTCACCCTTTAGAGGGTAAGATTGGGAATGTGACAGATTTAAGTCAGCTCGGGGTGAGGCCGAGAGA GGCTATTGTAGTACATTGGATGCATCATTGTTTGTATGATGTAACAGGAAGTGATTTAGGGACGTTGAAGTTGTTGACTTTGTTGAGGCCCAAATTGATC ACGACCGTTGAACAAGATTTAAGTCACGGGGGGAGTTTTTTAGGGAGGTTCGTAGAGGCATTGCATTATTATAGTGCCTTGTTTGATGCACTTGGGGATG GATTAGGTGTGGACAGCGTAGAGAGGCATATGGTGGAGCAGCAATTGTTTGGGTGTGAGATTAGGAATATTGTTGCTGTTGGTGGACCTAAGAGGACCGG TGAGGTTAAGGTTGAGAGATGGGGTGATGAGTTGCGACGGGTCGGGTTTGAACCCGTTTCGCTTGGCGGTAGCCCGGCTGCTCAAGCTAGTTTGTTGCTT GGGATGTTTCCATGGAAAGGGTACACTTTGGTTGAGGAAAACGGGTCCTTGAAATTGGGGTGGAAGGACTTGTCCTTGTTGACTGCCTCTGCGTGGCAGC CGTCGGATTGA
AA sequence Show only first row Show all	>Potri.016G018900.1 pacid=42810585 polypeptide=Potri.016G018900.1.p locus=Potri.016G018900 ID=Potri.016G018900.1.v4.1 annot-version=v4.1 MLQSLIPQSPINSTDPNNSSSPSMKSKRAAADLTAGDSSGEDPSSKRVSYEKPTTEIDCVGDDGGEASGLRLLGLLLQCAECVAMDNLNDATDLLPEIAE LSSPFGSSPERVGAYFAHALQARVVGSCLGTYSPLVSKSVTLTQSQRLFNALQSYNSISPLVKFSHFTANQAIFQALDGEDRVHVIDLDIMQGLQWPGLF HILASRPKKIRSMRITGFGSSSELLESTGRRLADFASSLGLPFEFHPLEGKIGNVTDLSQLGVRPREAIVVHWMHHCLYDVTGSDLGTLKLLTLLRPKLI TTVEQDLSHGGSFLGRFVEALHYYSALFDALGDGLGVDSVERHMVEQQLFGCEIRNIVAVGGPKRTGEVKVERWGDELRRVGFEPVSLGGSPAAQASLLL GMFPWKGYTLVEENGSLKLGWKDLSLLTASAWQPSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41920	GRAS		GRAS family transcription fact...		Potri.016G018900 [exp]	0	1
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.012G035800 [exp]	4.79	0.8551
AT2G44940	AP2_ERF		Integrase-type DNA-binding sup...		Potri.002G141200 [exp]	10.19	0.8531
AT2G03440		ATNRP1	nodulin-related protein 1 (.1)		Potri.010G161200 [exp]	12.72	0.8362
AT2G46970	bHLH	PIL1, bHLH124	phytochrome interacting factor...		Potri.014G111400 [exp]	30.78	0.8347
AT1G19190			alpha/beta-Hydrolases superfam...		Potri.004G142900 [exp]	38.49	0.8031
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Potri.001G060700 [exp]	38.88	0.8073
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Potri.019G014302 [exp]	44.35	0.8175
AT3G17510		CIPK1, SnRK3.16	SNF1-RELATED PROTEIN KINASE 3....		Potri.010G002500 [exp]	50.49	0.7599
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Potri.004G052400 [exp]	60.00	0.8040
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.010G080000 [exp]	68.41	0.7913

Compare expression of checked genes

Potri.016G018900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.