Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14920 245 / 7e-76 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT2G01570 237 / 3e-72 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT3G03450 218 / 2e-65 GRAS RGL2 RGA-like 2 (.1) AT5G17490 209 / 2e-62 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G66350 209 / 4e-62 GRAS RGL1 RGA-like 1 (.1) AT5G48150 138 / 3e-36 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G21450 138 / 1e-35 GRAS SCL1 SCARECROW-like 1 (.1) AT1G50600 138 / 1e-35 GRAS SCL5 scarecrow-like 5 (.1) AT2G04890 134 / 3e-35 GRAS SCL21 SCARECROW-like 21 (.1) AT4G17230 121 / 8e-30 GRAS SCL13 SCARECROW-like 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G133000 [exp] 335 / 2e-112 AT2G01570 216 / 2e-64 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G018600 [exp] 317 / 3e-101 AT2G01570 215 / 6e-61 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G018801 [exp] 309 / 1e-95 AT2G01570 218 / 3e-60 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G070500 [exp] 300 / 7e-95 AT1G14920 191 / 7e-53 RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) Potri.017G148266 [exp] 295 / 2e-93 AT2G01570 196 / 4e-54 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 254 / 1e-78 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 251 / 3e-77 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 238 / 4e-72 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 237 / 9e-72 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033583 [exp] 237 / 3e-72 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10017626 [exp] 235 / 2e-71 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10017758 [exp] 167 / 4e-46 AT2G01570 454 / 4e-155 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10009133 [exp] 149 / 4e-43 AT1G14920 286 / 3e-95 RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) Lus10029747 [exp] 153 / 6e-41 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10042776 [exp] 152 / 9e-41 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10012323 [exp] 146 / 9e-39 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10016596 [exp] 144 / 5e-38 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10028511 [exp] 139 / 4e-36 AT5G17490 527 / 0.0 RGA-like protein 3 (.1) Lus10006369 [exp] 138 / 6e-36 AT5G48150 633 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.016G027800.2 pacid=42809183 polypeptide=Potri.016G027750.1.p locus=Potri.016G027800 ID=Potri.016G027800.2.v4.1 annot-version=v4.1 ATGGCCAATCTTCTCTTCAATAAATTGATGGAGAGTGCCAAGGCAATTGAAGGTGGTAATCTGGATCTTGCAGAGTCACTTCTGGAGGAAATCAGACATC TAGTTTCTACAGAACCCAACATAGCAACAAGGAAGGTTGTGAAAAACTTTGCAGAGGCTTTAGTCCGGCGAGTCAATGGACTGCATCCTCGATATCCTTT GCCGTTAGTACCTTCCTCAAATCTAGAGGACTTCTACAATTATGTATTTTATCCTTTCTACTGGTTTTCTTACTTCACCACCACGCATGCCATCCATGCC TTCCGCACTGGAAATAAACCACTCCATGTTATTGATTTCTCAGTCATGCTATACACCTCTTTGTGGCATGATTTGATGCGAGATCTTGCGAATCAGCCTG GTGGCCTGCCATCTTTTCGGTTGACCAGCATCGTGCCGAAACTGTCAAGGAATTTTGACTACCTACAACAAATACGCAGTAAACTCACTCGAGCTGCTGA ACGGCTCAGGGTTGATTTTGAATTGAGACAAGTGGTGGCCAATAATGCGAAAGAAATCATTGAATGTTGTGTGTCTAAGATCAGAAGGACAAGGGAGGAT GAGATGCTAGTCGTGAGATGGTCGTTTTCACTTCACAAGTTGCTTTCACAGGAAGGTGCCCTTGAGCAGGTGCTCTCAAAGGTGAAGGATTTAAAACCAG ACATCATGATAATTGTCGAGCAGGAAGCCAATCATAACGGGTCTGATTTCATGGACCGGTTTGTCAAGTCATTTCAATACTACTCCACTATTTTTCACTC ACTAGAGGAGGACAACTTCTACCGCGATGTGGATGGCATGGAGTTGTGGAAGAGGAATTTCAGACGGCAAATTGGGAACGTGGTGGCATGTGAGGGCATT GACAGGGTCGAGCGGCATGAGTCATTGTATCAATGGCAAGAGCGGCTATTGCATGCTGGGTTTCATCCAATGCAACAGTGGTGGAAGAACGATAGACATA CTCTCCAGTTGAAATACAGAATACAAGAGAAGGATGGACATCCTATGCTATATCGGCACAATTGCCCCCTTCTTGTCACCTCGGTTTGGAAACACTCTGA CCCATCTCAGTTCAGTGATGGTTCTATCACATTACAAGATGTAACTATGTTCCCTCTAGCTGAGAAGTCTGACTTGATGACTTCTTCTGAGTCTGTGGAT GAACAAGCAGATGATAGGGAAGACAGTATGTGGTCTCCAAGGGTAGCTTTCTAA
AA sequence Show only first row Show all	>Potri.016G027800.2 pacid=42809183 polypeptide=Potri.016G027750.1.p locus=Potri.016G027800 ID=Potri.016G027800.2.v4.1 annot-version=v4.1 MANLLFNKLMESAKAIEGGNLDLAESLLEEIRHLVSTEPNIATRKVVKNFAEALVRRVNGLHPRYPLPLVPSSNLEDFYNYVFYPFYWFSYFTTTHAIHA FRTGNKPLHVIDFSVMLYTSLWHDLMRDLANQPGGLPSFRLTSIVPKLSRNFDYLQQIRSKLTRAAERLRVDFELRQVVANNAKEIIECCVSKIRRTRED EMLVVRWSFSLHKLLSQEGALEQVLSKVKDLKPDIMIIVEQEANHNGSDFMDRFVKSFQYYSTIFHSLEEDNFYRDVDGMELWKRNFRRQIGNVVACEGI DRVERHESLYQWQERLLHAGFHPMQQWWKNDRHTLQLKYRIQEKDGHPMLYRHNCPLLVTSVWKHSDPSQFSDGSITLQDVTMFPLAEKSDLMTSSESVD EQADDREDSMWSPRVAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Potri.016G027800 [exp]	0	1
AT1G68940			Armadillo/beta-catenin-like re...		Potri.010G136500 [exp]	2.23	0.9830
AT4G27290			S-locus lectin protein kinase ...		Potri.001G413800 [exp]	2.44	0.9701
AT5G39970			catalytics (.1)		Potri.017G075800 [exp]	2.82	0.9776
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.019G080500 [exp]	3.46	0.9732	CYP716B4
AT5G05340			Peroxidase superfamily protein...		Potri.016G132800 [exp]	4.89	0.9757	Pt-PRX1.7
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Potri.003G156200 [exp]	5.65	0.9652
AT4G14746			unknown protein		Potri.005G051900 [exp]	5.91	0.9702
					Potri.001G130800 [exp]	8.12	0.9673
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.002G258700 [exp]	8.77	0.9447	PTR2.1
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.004G191400 [exp]	8.94	0.9687

Compare expression of checked genes

Potri.016G027800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.