Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09600 375 / 5e-131 MYB LCL5 (LHY-CCA1-LIKE5), REVEILLE 8 (RVE8) REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) AT5G02840 357 / 3e-124 MYB LCL1 LHY/CCA1-like 1 (.1.2.3) AT5G52660 261 / 2e-85 MYB Homeodomain-like superfamily protein (.1.2) AT1G01520 259 / 2e-85 MYB ASG4 ALTERED SEED GERMINATION 4, Homeodomain-like superfamily protein (.1) AT4G01280 243 / 8e-79 MYB Homeodomain-like superfamily protein (.1.2) AT5G37260 105 / 3e-26 MYB RVE2, CIR1 REVEILLE 2, CIRCADIAN 1, Homeodomain-like superfamily protein (.1) AT5G17300 106 / 8e-26 MYB RVE1 REVEILLE 1, Homeodomain-like superfamily protein (.1) AT1G18330 103 / 5e-25 MYB RVE7, EPR1 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) AT3G10113 102 / 1e-24 MYB Homeodomain-like superfamily protein (.1) AT1G01060 103 / 4e-24 MYB LHY, LHY1 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G133000 [exp] 501 / 5e-180 AT3G09600 379 / 1e-132 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.014G089300 [exp] 270 / 7e-89 AT4G01280 293 / 2e-98 Homeodomain-like superfamily protein (.1.2) Potri.002G163100 [exp] 270 / 1e-88 AT4G01280 266 / 1e-87 Homeodomain-like superfamily protein (.1.2) Potri.017G146800 [exp] 260 / 2e-85 AT5G52660 303 / 3e-102 Homeodomain-like superfamily protein (.1.2) Potri.004G073300 [exp] 260 / 2e-85 AT5G52660 298 / 2e-100 Homeodomain-like superfamily protein (.1.2) Potri.015G030400 [exp] 104 / 7e-25 AT1G18330 170 / 1e-48 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.014G106800 [exp] 105 / 8e-25 AT1G01060 378 / 3e-121 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Potri.012G038300 [exp] 103 / 1e-24 AT1G18330 158 / 5e-44 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.002G180800 [exp] 102 / 5e-24 AT1G01060 369 / 1e-117 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019902 [exp] 379 / 4e-131 AT3G09600 351 / 9e-121 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Lus10014015 [exp] 348 / 4e-118 AT3G09600 317 / 3e-106 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Lus10007914 [exp] 263 / 5e-86 AT5G52660 301 / 8e-101 Homeodomain-like superfamily protein (.1.2) Lus10036392 [exp] 260 / 4e-85 AT5G52660 306 / 5e-103 Homeodomain-like superfamily protein (.1.2) Lus10027521 [exp] 256 / 4e-84 AT5G52660 353 / 1e-122 Homeodomain-like superfamily protein (.1.2) Lus10039284 [exp] 255 / 2e-82 AT5G52660 350 / 9e-120 Homeodomain-like superfamily protein (.1.2) Lus10038846 [exp] 226 / 1e-70 AT5G52660 292 / 2e-96 Homeodomain-like superfamily protein (.1.2) Lus10031893 [exp] 105 / 3e-25 AT3G10113 207 / 2e-63 Homeodomain-like superfamily protein (.1) Lus10031322 [exp] 105 / 4e-25 AT1G18330 199 / 4e-60 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10042292 [exp] 104 / 6e-25 AT1G18330 198 / 5e-60 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.016G083900.7 pacid=42808939 polypeptide=Potri.016G083900.7.p locus=Potri.016G083900 ID=Potri.016G083900.7.v4.1 annot-version=v4.1 ATGATAATGAACACCAACTCATCCTCTTCAACTTCAACGGCAGGAGCTGGAACAGAAGCGAATCCAGGTGGTCCTGATCAAGCAATGGCTACACAACCAC CATTAGCAGCAGCAGCAGCTACAGGTACAACCTCAGCAACTAGCAGTGATGGGTCAGGCAAGAAAGTAAGAAAACCTTATACAATTACCAAGTCTCGTGA GAGTTGGACTGAGGAAGAGCATGACAAGTTCCTTGAAGCCCTTCAATTGTTTGATCGTGACTGGAAAAAGATTGAAGATTTTGTGGGATCAAAGACGGTG ATCCAGATTCGGAGTCATGCGCAGAAATACTTTCTGAAGGTCCAGAAGAATGGTACAATCGCCCACGTGCCTCCTCCTCGCCCTAAACGCAAAGCCTCTC ATCCCTACCCACAGAAGGCTTCAAAAATTGTTTTATTGCCACTCCCAGTATCCATGGCTTACCCTTCATCAATGAATACCTTTACACCGGGATATGCTCC ATGGGATGAAACTTCAATGTTAATAACCTCCGCAACAAGAAAAATCATGCCATCGCAAGATGAGCTTGCTAATTTTCACGGAGCTGAAGCTGATATTGGA ACAAAGGATGTATCAGATATTGGAACAAAGGGTGTATCAAGGTTTAGTTACAATACTGTCAGTGGCCTTGGGACATCAAGTAGAACATTGCCGAGTGCTG AGATGCCAAAGCAAGGGAAGCAAGCACCTGTGCTTCATGGTATACCAGATTTTGCTGAAGTATATAGCTTCATTGGAAGCGTTTTTGATGTGGAAACGAA AGGGCATGTGAAAAAGCTCAACGAAATGGACCCAATAAATTTTGAAACTGTTTTGTTGTTGATGAGGAACCTTACTGTTAATTTGTCTAGCCCTGATTTT GAGCCAATTAGGAAGGTCATGTCATCTTATGATGTCAATAGCAAAACAGTGGGAGTTGCTGCCCTGAACCAGACCAATGATATAGCATGTTGA
AA sequence Show only first row Show all	>Potri.016G083900.7 pacid=42808939 polypeptide=Potri.016G083900.7.p locus=Potri.016G083900 ID=Potri.016G083900.7.v4.1 annot-version=v4.1 MIMNTNSSSSTSTAGAGTEANPGGPDQAMATQPPLAAAAATGTTSATSSDGSGKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTV IQIRSHAQKYFLKVQKNGTIAHVPPPRPKRKASHPYPQKASKIVLLPLPVSMAYPSSMNTFTPGYAPWDETSMLITSATRKIMPSQDELANFHGAEADIG TKDVSDIGTKGVSRFSYNTVSGLGTSSRTLPSAEMPKQGKQAPVLHGIPDFAEVYSFIGSVFDVETKGHVKKLNEMDPINFETVLLLMRNLTVNLSSPDF EPIRKVMSSYDVNSKTVGVAALNQTNDIAC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Potri.016G083900 [exp]	0	1
AT3G21150	CO	EIP6, BBX32	EMF1-Interacting Protein 1, B-...		Potri.010G251800 [exp]	3.00	0.9324
					Potri.016G041301 [exp]	3.46	0.9291
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Potri.009G053800 [exp]	4.47	0.9380
AT4G27030		FADA, FAD4	FATTY ACID DESATURASE 4, fatty...		Potri.001G424700 [exp]	5.19	0.9437
AT3G02380	CO	ATCOL2, COL2	CONSTANS-like 2 (.1)		Potri.017G107500 [exp]	5.65	0.9218
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.004G121800 [exp]	7.48	0.8841
AT5G24850		CRY3	cryptochrome 3 (.1)		Potri.006G277500 [exp]	8.06	0.9274
AT2G39760		ATBPM3	BTB/POZ/MATH-domains containin...		Potri.010G199200 [exp]	8.77	0.8704
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Potri.006G133000 [exp]	12.96	0.9115
					Potri.015G143150 [exp]	14.49	0.9238

Compare expression of checked genes

Potri.016G083900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.