Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28550 307 / 2e-99 AP2_ERF TOE1, RAP2.7 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) AT4G36920 291 / 7e-94 AP2_ERF FL1, FLO2, AP2 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) AT5G67180 275 / 1e-88 AP2_ERF TOE3 target of early activation tagged (EAT) 3 (.1) AT5G60120 187 / 2e-53 AP2_ERF TOE2 target of early activation tagged (EAT) 2 (.1), target of early activation tagged (EAT) 2 (.2) AT5G57390 165 / 1e-44 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT3G54990 157 / 1e-43 AP2_ERF SMZ SCHLAFMUTZE, Integrase-type DNA-binding superfamily protein (.1.2) AT1G51190 160 / 4e-43 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT3G20840 160 / 5e-43 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT1G72570 154 / 7e-42 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G17430 157 / 1e-41 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G132400 [exp] 727 / 0 AT2G28550 307 / 2e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.008G045300 [exp] 333 / 4e-109 AT2G28550 292 / 1e-93 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.010G216200 [exp] 296 / 9e-95 AT2G28550 263 / 9e-83 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.007G046200 [exp] 295 / 4e-94 AT4G36920 361 / 2e-120 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.005G140700 [exp] 290 / 2e-92 AT4G36920 355 / 1e-118 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.003G185300 [exp] 162 / 2e-45 AT1G16060 291 / 5e-97 ARIA-interacting double AP2 domain protein (.1.2) Potri.003G205700 [exp] 161 / 2e-43 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.001G018400 [exp] 160 / 5e-43 AT1G51190 639 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.001G169500 [exp] 159 / 2e-42 AT1G72570 389 / 2e-131 Integrase-type DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015055 [exp] 379 / 4e-127 AT2G28550 302 / 1e-97 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10019905 [exp] 377 / 5e-126 AT2G28550 306 / 6e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10026477 [exp] 349 / 2e-117 AT4G36920 298 / 3e-98 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10023165 [exp] 355 / 4e-117 AT4G36920 302 / 2e-97 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10018124 [exp] 291 / 4e-93 AT2G28550 342 / 4e-113 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10041595 [exp] 285 / 2e-91 AT4G36920 370 / 2e-125 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10019331 [exp] 281 / 3e-89 AT4G36920 392 / 1e-133 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10009374 [exp] 280 / 5e-89 AT4G36920 394 / 2e-134 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10004990 [exp] 278 / 3e-87 AT4G36920 369 / 2e-123 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10036141 [exp] 269 / 3e-84 AT2G28550 330 / 4e-108 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.016G084500.1 pacid=42810100 polypeptide=Potri.016G084500.1.p locus=Potri.016G084500 ID=Potri.016G084500.1.v4.1 annot-version=v4.1 ATGATGTTGGATCTTAACTTGACCGCGGGTTCTGGTGACTCGTCAACGACAGCGAAGAATAATAATAAGATGAAGATTCTAGAGCTTTCCAACTCTCCAA TGGAAAGTTCTGGGAGCTTCAATTCTTCTTCTGTGGTCAATGCGGATGGCTGTGGTGACGAGGACTCTTGCTCCAACGGCGACGTCTTTGCTCTCAATTT CAGTATCTTGTCAAATGAAAGCAGCTCCAAGAAGACCGTTTATTCTAACACTAATGATCATGATGACCGTGGAGATCGAACGATCCAGCTCTTTCCAGTG GAGTGTGGGCCCAAGAATGTAGGAGGAGAGTCTAACTCTTCTTCGACGGTGCAGATGCAGCCGGTGGATCTCGGTGGGTCCAGGAATTATGGTGGTCCTC CGGAGCAGGGGATCGGGGCTCGACAACAAAAGCCCGTGAAAAAGAGTCGGCGTGGGCCCAGGTCGAGAAGCTCGCAGTATAGAGGAGTCACGTTTTATCG GAGAACTGGAAGATGGGAATCTCATATTTGGGATTGTGGAAAGCAAGTGTACTTGGGGGGATTTGATACTGCACATGCTGCAGCTAGGGCATATGATCGA GCTGCGATCAAGTTCCGTGGAGTTGATGCTGACATCAACTTTAACGTTAGTGATTATGATGAGGACATTAAGCAGATGAGTGGTTTCACAAAGGAAGAAT TTGTGCATACTCTACGGCGTCAGAGCACTGGATTCTCTAGGGGAAGCTCAAAATATAGAGGAGTGACACTCCACAAGTGTGGCCGATGGGAGGCTCGTAT GGGGCAGTTCCTGGGAAAGAAGTACATTTATCTTGGGCTATTCGATAGCGAGATAGAAGCTGCAAGGGCTTATGACAAGGCTGCCATTAAATGTAATGGA AGGGAAGCAGTTACCAACTTTGAGCCAAGCAAATATGAAGGGGAGATACTTTCAGAGCCCAGCAGTGGAGACGGCAACCAAAATCTTGACCTGAAGTTGG GAATTGCCCCTCCCGATGCTTCTGATAGCCTAAAGGTAAACAGCAACATGGGTGGCTTTTATTTCCACGGTGGCTGGGATGGCGTGTCTACTGATAGGGC ACCAAAGTTTCTGAACTCTGTTTCTGCAACAATGAAAAATCAACTACCGAATGGCCCCGGAGTGACATCTGTTCACCCTCCTATGTGGGATGGTATAAAT CATCGAATCTTTCCCATCTATGAGGAAAGAGCAATAGAGAAGAGAATGGAAGTAGATTCCTTTCCAAATTGGACCAGGCAAATCCAAGGCCCTTATGGTG GTGGAGCAAATCCACTGCCTCTCTTCTCTACTGCAGCATCATCAGGATTCGCTTCTTCAGCAATTATGGCACCTTCAGCAGCTGCTGGTCAACTTCACTA TCCAAGTTCAACAATCCTCCACCATCGATTTTCTCCTCCAATTACCAACCCCAGCAACATCTCTCAATTCTACTGTAGGAGCTGA
AA sequence Show only first row Show all	>Potri.016G084500.1 pacid=42810100 polypeptide=Potri.016G084500.1.p locus=Potri.016G084500 ID=Potri.016G084500.1.v4.1 annot-version=v4.1 MMLDLNLTAGSGDSSTTAKNNNKMKILELSNSPMESSGSFNSSSVVNADGCGDEDSCSNGDVFALNFSILSNESSSKKTVYSNTNDHDDRGDRTIQLFPV ECGPKNVGGESNSSSTVQMQPVDLGGSRNYGGPPEQGIGARQQKPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDR AAIKFRGVDADINFNVSDYDEDIKQMSGFTKEEFVHTLRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAAIKCNG REAVTNFEPSKYEGEILSEPSSGDGNQNLDLKLGIAPPDASDSLKVNSNMGGFYFHGGWDGVSTDRAPKFLNSVSATMKNQLPNGPGVTSVHPPMWDGIN HRIFPIYEERAIEKRMEVDSFPNWTRQIQGPYGGGANPLPLFSTAASSGFASSAIMAPSAAAGQLHYPSSTILHHRFSPPITNPSNISQFYCRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Potri.016G084500 [exp]	0	1
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Potri.006G132400 [exp]	1.00	0.8251
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.011G091900 [exp]	7.07	0.7780	ARF6.4
AT3G24320		CHM1, ATMSH1, C...	CHLOROPLAST MUTATOR, MUTL prot...		Potri.010G065000 [exp]	12.00	0.7686	CHM.1
AT5G63960		EMB2780	DNA binding;nucleotide binding...		Potri.005G065800 [exp]	15.29	0.7572
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Potri.013G152200 [exp]	16.49	0.7621
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Potri.001G078600 [exp]	19.89	0.8015
AT1G63020		SMD2, PolIVa, S...	SILENCING MOVEMENT DEFICIENT 2...		Potri.001G111300 [exp]	23.49	0.7973
AT1G19880			Regulator of chromosome conden...		Potri.002G026600 [exp]	29.24	0.7618
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Potri.014G130800 [exp]	32.18	0.7937
AT2G30480			unknown protein		Potri.013G157800 [exp]	41.02	0.7728

Compare expression of checked genes

Potri.016G084500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.