Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-TKI1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36960 665 / 0 MYB TKI1 TSL-kinase interacting protein 1 (.1.2.3) AT4G39380 136 / 2e-33 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G125400 [exp] 1321 / 0 AT2G36960 680 / 0.0 TSL-kinase interacting protein 1 (.1.2.3) Potri.005G086800 [exp] 169 / 4e-46 AT4G39380 245 / 2e-76 unknown protein Potri.007G077700 [exp] 166 / 1e-44 AT4G39380 245 / 2e-76 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013816 [exp] 870 / 0 AT2G36960 660 / 0.0 TSL-kinase interacting protein 1 (.1.2.3) Lus10026528 [exp] 724 / 0 AT2G36960 526 / 4e-178 TSL-kinase interacting protein 1 (.1.2.3) Lus10033530 [exp] 157 / 5e-41 AT4G39380 216 / 2e-64 unknown protein Lus10010230 [exp] 112 / 3e-29 AT2G36960 68 / 2e-14 TSL-kinase interacting protein 1 (.1.2.3) Lus10020841 [exp] 44 / 0.0003 AT4G39380 99 / 1e-23 unknown protein Lus10040386 [exp] 45 / 0.0004 AT3G52250 573 / 2e-175 Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.016G091700.1 pacid=42810455 polypeptide=Potri.016G091700.1.p locus=Potri.016G091700 ID=Potri.016G091700.1.v4.1 annot-version=v4.1 ATGGAGGCACAGGTCTCCTTGGACTCTGAGCGACAGCTTCTTCAAAATGGTTCAATTCAGGATGGAGATTCTGGTGTAACATCATCTACTCCAGATTGTG TTGAGACACGGCAGCCTGAGAAAAGACCAACACGGCAATGGGCTGCTTGGACACGTCAAGAAGAGGAAAGTTTTTTCACTGCATTACGACAAGTTGGCAA GAACTTTGAGAAAATTACTCACCATGTTCAAAGTAAAAACAAGGATCAGGTCAGGCACTATTACTATCGTCTTGTGAGGCGCATGAACAAATTGCTGGGC CCAGGATTGTGCCTAGATGCAAAAAACTCTAAAGATACAAATGCTGCAATGCTCCGATGGTGGTCTTTATTGGAAAAGTATAGTTGCAAAGCCTCAAAGC TTCACCTAAAACCACGAAGGTTTAAGATATTTATAGAAGCTCTGGAGAACCAACTCTTGAAAGATCAAAGGAAGAATGTAAGGAAAAGGTCTTCACAGGG GGAAAATGGTTCTCCAACGACTCCTAGCATTATCACTAATCAGAATAGAGCATCGGTGCATGATACTCGAACTGTTAAACTTGTTATTGTTGATAGTCAA AACATCCAAAAATTAGGTGGAAAGGGATCATTGAAGCGCAATGTTAATATGGGGGTTGTCCGTAACAACAATAAAGGAGACTCAACTGCAATGAAACCTG CAAGGCAAAGGCGAAAACCAGTCTCATCAGCTGCATATAAAAAATGGGAAAAGGCTGCAATTGCTGGAGTTTCTTTGGTAGCCGATGCTGCTGAGCATTT GGAACGGACAGCCACTGATAAAGAGGATGAACATGACCAAGGGAAAAAGGGTCTTGATCCTGTTGAAAAACTTCTTCCGCATTTTCATCCTTCGCTTCGT TGTGTTGAGAGTAATGCACTAACTAATATGAAGCTTAAGCTTCAATTGTTCCCAATTGATGATGGTACTCGAAGAGCGCTAGAAATGGATAAGCATAATC CACACCTGGAGCTCACTCTTAGCACTCGAAAAAAGATATCATCAGTACTGGAACATTTAAACCGGAAATGGGGTGATTCTACTGTAGCATCTGGAGAACT AATGCTTTTCCCTTACAGTGTTAATAGAGAGAACCTGGTGAGTTATCAAAGATGGACACAGGACTCACTTGTCAGTGCAGCCGATGTATACTTTTCAATT GGCAGTCCTCCAGTGTTTCGCTTGAGGTATGGCTGGTTTTTCAATGTCAACTTCGCTTCTGTAACATTGCAAGCACCTTCAACATATAGTTGCCTTCCAG TTGGAGGAAATGAGAAGGACAAGACTATGGATTCTGTACCCACAGCTGAGCCATCTACCAGTGATCAGTTTGAGAAACCTGAGAATCCCTGTAGGGATTG CCCAACTTCAGAGAACAATAATCATGCTTCTATACTTCATTCTGCAGGAGTGACCAATGAGAATAATGAGTTCGTTGCCACAGGACCCAGAAATAATCTG GTGAAGTCCTTTGATCCTGCAGCAAACATATCCTTGCATAGAAAGGAGACTGATGATAGGACTAACACGCAACAATCGGAAGATGTGGATGGCTTGAGAT TGAGCAATGTAAATCCGCTGTCTGCTGGGGAGTGGGCTGATAGCCTTACCAATGTTAGCATTGGAGATCTACTATCAGAATTACCTCATGTAGCAAATCA TAACTGCATTGAATCACTTATAGTTCAAAGCAATCAATGCCTTCAGGAGATCCCATTCAGCTGTGATTCATTTGATGCGGCAATTGCTGCACATATCTCA AGACATCAAGGCAAAATGGGATTTCATTCCGCAGTCGCATCCTATACATCTTCTATCTGGGATGGTGAAGAGACATGTGATGCTTTTGCTTTTCAAAAGA ATCATTCTTTACGTAAGGAAGTTACTACTTCATCTGCTGTTGCTTCTCCACGGGTCAGCAAACAGATGGACAGAACAAGCTCTATCACATCCAGTGCCTT TCTTGAGGAGTTGCCTGTTATTGAAGGGCCTAATGATTATCCTACTGGTGGAGAACCTATGGACGAATGCTCATCTGATTCACAAGTTGTGTCCAATCAA GTAAAGGATTTCAATGGGCTAACAGATATCTATTGGCCAGACTCGTTAGGGCTATTAGATCTGGATATACCATCCTCCAAATATCATACTGAAGATTTGA TTTTAAGTGATAGCCTTGGTGGTTTGAACCATCTGATAGCCAGCAGCTTGGATGCATTTCAAAATTGCTCCTTTTTCGGGCTAAACAAGAAAGATTCGAT TTCAACAGTTGAGGCTCGAGAAACTACCTCATTTTCAGATTTTAAAATCAGCGGGGGGGTTTGA
AA sequence Show only first row Show all	>Potri.016G091700.1 pacid=42810455 polypeptide=Potri.016G091700.1.p locus=Potri.016G091700 ID=Potri.016G091700.1.v4.1 annot-version=v4.1 MEAQVSLDSERQLLQNGSIQDGDSGVTSSTPDCVETRQPEKRPTRQWAAWTRQEEESFFTALRQVGKNFEKITHHVQSKNKDQVRHYYYRLVRRMNKLLG PGLCLDAKNSKDTNAAMLRWWSLLEKYSCKASKLHLKPRRFKIFIEALENQLLKDQRKNVRKRSSQGENGSPTTPSIITNQNRASVHDTRTVKLVIVDSQ NIQKLGGKGSLKRNVNMGVVRNNNKGDSTAMKPARQRRKPVSSAAYKKWEKAAIAGVSLVADAAEHLERTATDKEDEHDQGKKGLDPVEKLLPHFHPSLR CVESNALTNMKLKLQLFPIDDGTRRALEMDKHNPHLELTLSTRKKISSVLEHLNRKWGDSTVASGELMLFPYSVNRENLVSYQRWTQDSLVSAADVYFSI GSPPVFRLRYGWFFNVNFASVTLQAPSTYSCLPVGGNEKDKTMDSVPTAEPSTSDQFEKPENPCRDCPTSENNNHASILHSAGVTNENNEFVATGPRNNL VKSFDPAANISLHRKETDDRTNTQQSEDVDGLRLSNVNPLSAGEWADSLTNVSIGDLLSELPHVANHNCIESLIVQSNQCLQEIPFSCDSFDAAIAAHIS RHQGKMGFHSAVASYTSSIWDGEETCDAFAFQKNHSLRKEVTTSSAVASPRVSKQMDRTSSITSSAFLEELPVIEGPNDYPTGGEPMDECSSDSQVVSNQ VKDFNGLTDIYWPDSLGLLDLDIPSSKYHTEDLILSDSLGGLNHLIASSLDAFQNCSFFGLNKKDSISTVEARETTSFSDFKISGGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Potri.016G091700 [exp]	0	1	Pt-TKI1.1
AT2G44140			Peptidase family C54 protein (...		Potri.017G000500 [exp]	5.47	0.6468
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Potri.006G009100 [exp]	5.83	0.6786
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.010G023800 [exp]	6.70	0.6593	Pt-CUL1.3
AT1G07990			SIT4 phosphatase-associated fa...		Potri.004G211500 [exp]	8.36	0.6417
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Potri.013G075300 [exp]	9.79	0.6396
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.002G139700 [exp]	24.08	0.6485
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Potri.004G132900 [exp]	26.32	0.5700
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Potri.006G218900 [exp]	27.34	0.6242
AT1G19025			DNA repair metallo-beta-lactam...		Potri.007G106700 [exp]	33.36	0.5908
AT4G39140			RING/U-box superfamily protein...		Potri.009G120000 [exp]	37.29	0.6192

Compare expression of checked genes

Potri.016G091700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.