Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29080 1123 / 0 FTSH3 FTSH protease 3 (.1) AT1G07510 1108 / 0 FTSH10 FTSH protease 10 (.1) AT1G50250 412 / 8e-133 FTSH1 FTSH protease 1 (.1) AT5G42270 405 / 2e-130 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT5G15250 400 / 9e-129 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT2G30950 394 / 5e-126 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT1G06430 385 / 7e-123 FTSH8 FTSH protease 8 (.1) AT2G26140 368 / 4e-116 FTSH4 FTSH protease 4 (.1) AT5G53170 361 / 2e-112 FTSH11 FTSH protease 11 (.1) AT5G58870 356 / 1e-110 FTSH9 FTSH protease 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G033600 [exp] 1136 / 0 AT1G07510 1114 / 0.0 FTSH protease 10 (.1) Potri.002G012000 [exp] 407 / 6e-131 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.005G249200 [exp] 405 / 3e-130 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 390 / 6e-125 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.014G139500 [exp] 385 / 2e-122 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.002G215100 [exp] 384 / 2e-122 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.015G020700 [exp] 363 / 4e-113 AT5G53170 1096 / 0.0 FTSH protease 11 (.1) Potri.006G227700 [exp] 355 / 5e-111 AT2G26140 1066 / 0.0 FTSH protease 4 (.1) Potri.012G000700 [exp] 355 / 3e-110 AT5G53170 1076 / 0.0 FTSH protease 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001573 [exp] 1138 / 0 AT1G07510 1194 / 0.0 FTSH protease 10 (.1) Lus10016516 [exp] 1108 / 0 AT1G07510 1111 / 0.0 FTSH protease 10 (.1) Lus10040785 [exp] 1053 / 0 AT1G07510 1078 / 0.0 FTSH protease 10 (.1) Lus10004973 [exp] 745 / 0 AT1G07510 815 / 0.0 FTSH protease 10 (.1) Lus10004972 [exp] 588 / 0 AT1G07510 580 / 0.0 FTSH protease 10 (.1) Lus10012277 [exp] 406 / 2e-133 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10021824 [exp] 408 / 3e-131 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10016003 [exp] 402 / 4e-129 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001054 [exp] 390 / 1e-124 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001420 [exp] 389 / 4e-123 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0126 [poplar] [flax] Peptidase_MA PF01434 [poplar] [flax] Peptidase_M41 Peptidase family M41 CL0126 [poplar] [flax] PF06480 [poplar] [flax] FtsH_ext FtsH Extracellular
Representative CDS sequence Show only first row Show all	>Potri.016G099800.2 pacid=42810445 polypeptide=Potri.016G099800.2.p locus=Potri.016G099800 ID=Potri.016G099800.2.v4.1 annot-version=v4.1 ATGATACTGTCAAGAATCGGTCGCTCTCTCTCTCGTTCTGCTCGTTCAACATTACAAAGAAACGTAATTACCACAGGTAATTACCTTTTTAATGCGAGAA CTGTGTTAGTTGACGAACTAACTTCGCGATTTGCGGCATTAGAGAGTAATGGCATACGTGGATTAGGGATTGTAAGAGGTTATTTATCGTATTCTGGAGC TGGGAAACAGATTGTGTCAAGCACGCAGTTGTCGAATTTGAATTCTATTCTTGCGAACCCTAGGGTTAGACGCTTTTTCTGTAGTGAAGCTCCCAAGAAG AGAAAGTATGAGAATTATTACCCAAAAGATAAGAAGGAAATTCCCAAGGCAAATGAGAGTAAATCGGAGTCCAAAGAGGACTCTGGTGGTGCTGGTGGTG GAGATTCCCAGAACACTCTGAAGCTGTTTCAAAATATTATCACTCCTTTATTATTCCTTGCCTTTGTGTATTCTTCAATGTTTTTCAATACTCAGGAGCA AAAGCAGATTAGTTTCCAAGAGTTCAAGAATAAGTTACTGGAACCTGGTCTAGTGGATCACATAGTTGTTTCAAATAAATCAGTTGCAAAAGTACATGTG AGGAACTCACCGCAGAATGCAAATCAAAGTGGTGATAATGTTAATGGTACTTCTTCCAGAACGAACGATGGCCAGTACAAATTCTATTTTAACATTGTCA GTGTTGAATCTTTCGAAGAGAAGCTGGAGGAAGCCCAGCAAGCTCTAGGGATTGATCCTCATGATTTTGTCCCTGTAACTTATGTGAATGAAGTGAACTG GTTTCAAGAGTTGATGAGGTTTGCTCCAACAGCCATGCTTCTAGGAGTCCTGTGGTTCATGGGGCGAAGAATGCAGAGTGGCCTTGGTGTTGGTGGTCCT GGTGGACGAGGAGGCCGTGGAATATTTAACATGGGAAAAGCACATATTACAAAGCTGGATAAGAATGCCAAAGATAAGGTATTCTTTAAAGATGTAGCTG GCTGTGATGAGGCAAAGCAAGAGATTATGGAGTTTGTACACTTCCTCAAGAATCCAAAGAAATATGAGGAGTTGGGAGCTAAAATTCCGAAAGGTGCCCT CCTTGTAGGCCCACCAGGCACAGGGAAAACGCTTCTTGCAAAGGCAACTGCTGGTGAATCTGATGTGCCTTTCTTATCCATGTCCGGGTCTGATTTCATG GAAATGTTTGTTGGAGTTGGGCCATCCAGAGTTAGAAGCTTATTCCAGGAGGCAAGACAATGTGCACCTAGCATTATATTCATTGATGAAGTAGATGCAA TTGGTCGAGCAAGGGGTCGTGGAGGCTTTTCAGGTGGCAATGATGAGCGCGAAAGTACTCTTAATCAGTTGCTTGTGGAAATGGATGGATTTGGGACCAC CTCTGGAGTAGTTGTGCTTGCTGGCACAAACAGACCTGATATCTTAGACAAAGCATTGCTGAGACCTGGTCGGTTTGATCGTCAAATTACCATTGACAAG CCTGACATCAAAGGCCGAAACCAGATTTTCCTTATCTATTTAAAAAAGCTAAAACTTGATAATGAGCCATCTCATTACTCTCAGCGACTTGCTGCTCTTA CTCCTGGATTTGCTGGTGCAGACATTGCAAATATTTGCAATGAAGCTGCTTTAATAGCTGCAAGGAATGAGAGTGCACAAGTGACAATGAATCATTTTGA GGCAGCCATAGACAGGGTAATTGGTGGTTTGGAAAAGAAGAATAAGGTTATAAGCAGGCTTGAAAGGCGGACTGTTGCTTACCATGAATCTGGTCATGCT GTTGCTGGTTGGTTTTTGGAACATGCTGAACCCTTGCTTAAGGTAACAATTGTTCCACGGGGTACTGCAGCACTGGGTTTTGCTCAGTATGTTCCCAATG AAAATCTTTTGATGACCAAAGAGCAGCTTTTTGATATGACTTGCATGACACTTGGTGGTAGAGCTGCCGAGCAGGTTCTGCTGGGAAAGATTTCAACTGG AGCCCAAAATGACTTGGAGAAGGTCACTAAGATGACTTATGCCCAGGTGGCTGTTTACGGTTTTAGTGATAAAGTGGGACTTCTTTCCTTCCCTCAGAGG GATGATGCGTTTGAGATGAGCAAGCCCTACAGCAGTGAGACGGGAGCAATTATAGACAGTGAAGTAAGGGAGTGGGTGGGCAAGGCATATGACTCTACCG TTAAGTTGATAGAGGAGCACAAAGAGCAAGTGGCACAGATAGCAGAGCTGTTACTTGAGAAGGAGGTCCTCCATCAGGATGACTTGGTTAGGGTTCTGGG AGAACGACCATTTAAAACTAGTGAGCCCACAAATTATGATAGGTTTAAGCAAGGATTTGAACAAGATGACAAGGAGACAGCAAAGGGTGAGACCTTCGAT GATGATGGATCATCACCGATAGAGCCTCAGGTTGTTCCTGCATAG
AA sequence Show only first row Show all	>Potri.016G099800.2 pacid=42810445 polypeptide=Potri.016G099800.2.p locus=Potri.016G099800 ID=Potri.016G099800.2.v4.1 annot-version=v4.1 MILSRIGRSLSRSARSTLQRNVITTGNYLFNARTVLVDELTSRFAALESNGIRGLGIVRGYLSYSGAGKQIVSSTQLSNLNSILANPRVRRFFCSEAPKK RKYENYYPKDKKEIPKANESKSESKEDSGGAGGGDSQNTLKLFQNIITPLLFLAFVYSSMFFNTQEQKQISFQEFKNKLLEPGLVDHIVVSNKSVAKVHV RNSPQNANQSGDNVNGTSSRTNDGQYKFYFNIVSVESFEEKLEEAQQALGIDPHDFVPVTYVNEVNWFQELMRFAPTAMLLGVLWFMGRRMQSGLGVGGP GGRGGRGIFNMGKAHITKLDKNAKDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESDVPFLSMSGSDFM EMFVGVGPSRVRSLFQEARQCAPSIIFIDEVDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTSGVVVLAGTNRPDILDKALLRPGRFDRQITIDK PDIKGRNQIFLIYLKKLKLDNEPSHYSQRLAALTPGFAGADIANICNEAALIAARNESAQVTMNHFEAAIDRVIGGLEKKNKVISRLERRTVAYHESGHA VAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQR DDAFEMSKPYSSETGAIIDSEVREWVGKAYDSTVKLIEEHKEQVAQIAELLLEKEVLHQDDLVRVLGERPFKTSEPTNYDRFKQGFEQDDKETAKGETFD DDGSSPIEPQVVPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29080		FTSH3	FTSH protease 3 (.1)		Potri.016G099800 [exp]	0	1
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Potri.017G141000 [exp]	7.41	0.8322
AT1G08620		PKDM7D	Transcription factor jumonji (...		Potri.002G037300 [exp]	12.96	0.8314
AT3G14980			Acyl-CoA N-acyltransferase wit...		Potri.001G392801 [exp]	33.54	0.7907
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Potri.010G122866 [exp]	35.09	0.8255
AT5G49430			WD40/YVTN repeat-like-containi...		Potri.008G106800 [exp]	48.50	0.7570
AT3G49600		SUP32, ATUBP26,...	ubiquitin-specific protease 26...		Potri.005G179500 [exp]	51.91	0.7452	UBP26.2
AT3G22425		HISN5A, IGPD	imidazoleglycerol-phosphate de...		Potri.008G152701 [exp]	62.10	0.8132
AT5G36930			Disease resistance protein (TI...		Potri.011G009251 [exp]	62.24	0.8257
AT5G08110			nucleic acid binding;ATP-depen...		Potri.012G063500 [exp]	76.36	0.7619
AT3G14470			NB-ARC domain-containing disea...		Potri.017G138100 [exp]	76.74	0.7652

Compare expression of checked genes

Potri.016G099800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.