Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02180 586 / 0 Transmembrane amino acid transporter family protein (.1) AT5G02170 563 / 0 Transmembrane amino acid transporter family protein (.1.2) AT3G09330 553 / 0 Transmembrane amino acid transporter family protein (.1) AT3G09340 552 / 0 Transmembrane amino acid transporter family protein (.1) AT2G39130 484 / 6e-167 Transmembrane amino acid transporter family protein (.1) AT3G54830 420 / 1e-141 Transmembrane amino acid transporter family protein (.1) AT2G41190 398 / 3e-133 Transmembrane amino acid transporter family protein (.1) AT5G15240 279 / 1e-88 Transmembrane amino acid transporter family protein (.1.2) AT3G28960 267 / 3e-84 Transmembrane amino acid transporter family protein (.1) AT5G16740 246 / 1e-75 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G226000 [exp] 486 / 3e-167 AT2G39130 708 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G036300 [exp] 479 / 6e-165 AT2G39130 691 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.010G169000 [exp] 310 / 1e-100 AT3G28960 381 / 2e-130 Transmembrane amino acid transporter family protein (.1) Potri.006G038700 [exp] 305 / 1e-98 AT2G41190 459 / 9e-159 Transmembrane amino acid transporter family protein (.1) Potri.008G086500 [exp] 303 / 5e-98 AT3G28960 411 / 4e-142 Transmembrane amino acid transporter family protein (.1) Potri.017G083700 [exp] 300 / 2e-96 AT3G28960 456 / 2e-159 Transmembrane amino acid transporter family protein (.1) Potri.017G083500 [exp] 291 / 5e-93 AT5G15240 448 / 4e-156 Transmembrane amino acid transporter family protein (.1.2) Potri.018G099700 [exp] 249 / 3e-77 AT3G28960 348 / 6e-118 Transmembrane amino acid transporter family protein (.1) Potri.002G233200 [exp] 243 / 3e-74 AT5G16740 416 / 5e-143 Transmembrane amino acid transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010855 [exp] 568 / 0 AT5G02170 501 / 2e-171 Transmembrane amino acid transporter family protein (.1.2) Lus10024374 [exp] 522 / 0 AT5G02180 446 / 4e-152 Transmembrane amino acid transporter family protein (.1) Lus10039190 [exp] 452 / 4e-154 AT2G39130 652 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10003817 [exp] 379 / 7e-125 AT2G41190 615 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10010457 [exp] 380 / 1e-116 AT5G04140 2772 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) Lus10038702 [exp] 307 / 4e-99 AT2G39130 556 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10012824 [exp] 303 / 5e-98 AT5G15240 425 / 3e-147 Transmembrane amino acid transporter family protein (.1.2) Lus10005239 [exp] 295 / 9e-95 AT5G15240 509 / 4e-180 Transmembrane amino acid transporter family protein (.1.2) Lus10030469 [exp] 295 / 2e-94 AT5G15240 405 / 4e-139 Transmembrane amino acid transporter family protein (.1.2) Lus10030683 [exp] 283 / 6e-90 AT5G15240 510 / 2e-180 Transmembrane amino acid transporter family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF03222 [poplar] [flax] Trp_Tyr_perm Tryptophan/tyrosine permease family
Representative CDS sequence Show only first row Show all	>Potri.016G100300.1 pacid=42809709 polypeptide=Potri.016G100300.1.p locus=Potri.016G100300 ID=Potri.016G100300.1.v4.1 annot-version=v4.1 ATGAAGATAGATGAAGATCTGGGTCCTGATCGCGAAGACCAATTCCAAACAGACGATGAGGAAAACCAGGGTGAAAGGTTTTGTCAAAGTGATTCAGATT CAGAATCTGATAGCATGGATTCTTCACAGTACCTCTCCAACAACAGTTTTGACGTTACCACTCCATCATGGCCTCAGAGTTACAGGAAGTCGATAGACTT GCTTACCGGTACGACACCTCCTTCAGTTAACATCTTGAAAGGGACCAGTAGTATGGCGGGGAAAACCAGTTCTTTAACTTCAGTTTATAAGAGACGTCAA GGTTCAGAAGTGGATTCTTCTCTAAGTAGCCCATTCATCTCCGAACAAAGTTTAGGCAAAGAAGTACCAAGCTTCATACTGCCTGTGAAGTCATCTGCAT CTTCTCATTCGAGATTTTCTGTTAATGAATTGGCACCACCAGATCAAAAAGCTTCATTAGCTCAATCAATACTCAATGGAACAAATGTTTTGTGCGGCAT CGGACTCCTTACAATGCCTTACGCAATCAAAGAAGGAGGGTGGTTGAGCCTCATAATACTCTCACTATTTGGTGTCATCTGCTGCTACACTGGGATATTA TTGAAAAATTGTTTAGAAAGCTCTCCTGGACTACAAACTTACCCTGATATTGGACAAGCTGCTTTTGGAGTGGGTGGGCGCTTAGTGATATCAATGGTAT TATACGTTGAATTATATGCTTCGTGTGTGGAGTACGTAATCATGATGAGTGATAACTTGTCAACATTATTCCCAAACATGTACATGGATTTTGCGGGAAT ACATCTGGATTGTCATCAAATCTTCTCCATCACGGCAACTCTCATTGTTCTTCCAACAGTGTGGCTTCGAGACCTAAGTTTGCTGTCATACCTTTCAGTT GGAGGAGTAGTTGCATCAATTATAGTTGCTCTCTGCTTGTTATGGACTGGGGTGATCGACAAAATTGGATTTCATCCAACTGGAACAGCTCTAGACCTTG CAAACTTGCCTGTTGCAATTGGTATATATGGTTTCGGCTTCTCTGGCCATTCAGTTTTTCCAAATATTTACTCTTCTATGAAAGAACCATCAAGGTTTCC AACAGTTTTAATTACCAGCTTCATTTTTTGTTGGCTTATGTACACTGGAGCAGCAATATGTGGCTTTCTGATGTTCGGGAACTCGATCGAATCTCAGTAT ACTTTAAACATGCCAGCACAATTTGTGTCTTCTAAAGTTGCAGTCTGGACAGCAGTTGTTAACCCGATGACCAAGTATGCCTTGGTGATGATGCCTGTTG CACTGAGTTTAGAGGAACTCGTGCCTTCAGGCCGGTTTAGCTCTTACGGCGTGTCATTAATCATCAGAACAATCCTAGTGACCTCGACTTTAGCTGTGGC ACTAGCAGTTCCATTCTTTGGTTTTGTGATGGCCTTAATTGGATCTTTACTTGCAATGCTCGTGGCTGTTATCTTCCCATGTGTATGTTATCTCAGTATA CTCCATGAAAGATTAACTAAGTTGCAGATAGCAGCTTGCCTTTTCACCACTGGCGTGGGGGTGTTGTTTGCTTGCGTTGGCACATATTCAGCGATTACAA GAATAGCCGGCAAACTTGGCTGA
AA sequence Show only first row Show all	>Potri.016G100300.1 pacid=42809709 polypeptide=Potri.016G100300.1.p locus=Potri.016G100300 ID=Potri.016G100300.1.v4.1 annot-version=v4.1 MKIDEDLGPDREDQFQTDDEENQGERFCQSDSDSESDSMDSSQYLSNNSFDVTTPSWPQSYRKSIDLLTGTTPPSVNILKGTSSMAGKTSSLTSVYKRRQ GSEVDSSLSSPFISEQSLGKEVPSFILPVKSSASSHSRFSVNELAPPDQKASLAQSILNGTNVLCGIGLLTMPYAIKEGGWLSLIILSLFGVICCYTGIL LKNCLESSPGLQTYPDIGQAAFGVGGRLVISMVLYVELYASCVEYVIMMSDNLSTLFPNMYMDFAGIHLDCHQIFSITATLIVLPTVWLRDLSLLSYLSV GGVVASIIVALCLLWTGVIDKIGFHPTGTALDLANLPVAIGIYGFGFSGHSVFPNIYSSMKEPSRFPTVLITSFIFCWLMYTGAAICGFLMFGNSIESQY TLNMPAQFVSSKVAVWTAVVNPMTKYALVMMPVALSLEELVPSGRFSSYGVSLIIRTILVTSTLAVALAVPFFGFVMALIGSLLAMLVAVIFPCVCYLSI LHERLTKLQIAACLFTTGVGVLFACVGTYSAITRIAGKLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02180			Transmembrane amino acid trans...		Potri.016G100300 [exp]	0	1
AT1G03050			ENTH/ANTH/VHS superfamily prot...		Potri.006G118100 [exp]	23.23	0.7983
AT5G14345		AtENODL21	early nodulin-like protein 21 ...		Potri.001G338800 [exp]	29.44	0.8294
AT5G16100			unknown protein		Potri.006G223100 [exp]	34.23	0.8208
AT3G47570			Leucine-rich repeat protein ki...		Potri.018G120901 [exp]	38.01	0.8189
					Potri.001G169351 [exp]	45.51	0.8117
					Potri.001G196900 [exp]	54.40	0.8117
AT2G22440			unknown protein		Potri.001G266504 [exp]	57.06	0.6651
					Potri.001G276804 [exp]	62.03	0.8117
					Potri.001G330250 [exp]	64.37	0.8117
AT3G28007		SWEET4, AtSWEET...	Nodulin MtN3 family protein (....		Potri.001G344300 [exp]	66.63	0.8117

Compare expression of checked genes

Potri.016G100300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.