Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09220 676 / 0 LAC7 laccase 7 (.1) AT5G01050 617 / 0 Laccase/Diphenol oxidase family protein (.1) AT5G01040 615 / 0 LAC8 laccase 8 (.1) AT5G05390 538 / 0 LAC12 laccase 12 (.1) AT2G40370 524 / 0 LAC5 laccase 5 (.1) AT2G30210 513 / 2e-177 LAC3 laccase 3 (.1) AT2G38080 489 / 3e-168 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G07130 488 / 1e-167 LAC13 laccase 13 (.1) AT5G03260 486 / 3e-167 LAC11 laccase 11 (.1) AT2G29130 479 / 3e-164 LAC2, ATLAC2 laccase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G106100 [exp] 953 / 0 AT3G09220 672 / 0.0 laccase 7 (.1) Potri.016G106000 [exp] 925 / 0 AT3G09220 686 / 0.0 laccase 7 (.1) Potri.006G094100 [exp] 889 / 0 AT3G09220 691 / 0.0 laccase 7 (.1) Potri.010G183600 [exp] 555 / 0 AT2G40370 937 / 0.0 laccase 5 (.1) Potri.008G073700 [exp] 543 / 0 AT2G40370 946 / 0.0 laccase 5 (.1) Potri.010G183500 [exp] 539 / 0 AT5G05390 915 / 0.0 laccase 12 (.1) Potri.013G152700 [exp] 538 / 0 AT2G30210 916 / 0.0 laccase 3 (.1) Potri.008G073800 [exp] 533 / 0 AT5G05390 893 / 0.0 laccase 12 (.1) Potri.019G124300 [exp] 528 / 0 AT2G30210 845 / 0.0 laccase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035546 [exp] 695 / 0 AT3G09220 710 / 0.0 laccase 7 (.1) Lus10027747 [exp] 694 / 0 AT3G09220 707 / 0.0 laccase 7 (.1) Lus10017427 [exp] 518 / 3e-179 AT2G40370 894 / 0.0 laccase 5 (.1) Lus10002227 [exp] 516 / 9e-179 AT5G03260 926 / 0.0 laccase 11 (.1) Lus10023189 [exp] 515 / 2e-178 AT5G03260 930 / 0.0 laccase 11 (.1) Lus10026512 [exp] 506 / 1e-174 AT5G03260 919 / 0.0 laccase 11 (.1) Lus10040957 [exp] 484 / 5e-167 AT5G05390 810 / 0.0 laccase 12 (.1) Lus10017175 [exp] 483 / 4e-166 AT2G38080 875 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10009841 [exp] 481 / 4e-166 AT5G05390 811 / 0.0 laccase 12 (.1) Lus10032894 [exp] 483 / 6e-166 AT2G38080 894 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF00394 [poplar] [flax] Cu-oxidase Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07731 [poplar] [flax] Cu-oxidase_2 Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07732 [poplar] [flax] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Potri.016G106300.1 pacid=42809096 polypeptide=Potri.016G106300.1.p locus=Potri.016G106300 ID=Potri.016G106300.1.v4.1 annot-version=v4.1 ATGTTGCGTCTTCTGTTTTTGTTAACTTGTGCTTTGGCTCTTCTAGCTTCTTCAGTGGCTTCTGCTGCAATTGTGGAACACTCATTCTATGTGAAAAACC TTACAGTTCGTCGGCTGTGCTCCGAGCAAGTGGTAACTGCAGTGAATGGAAGCTTGCCAGGCCCAACGCTTCGCGTTCGAGAGGGAGACACCCTCATAGT CCATGTTTTTAACAAGTCACCCTACAACCTGACTATTCACTGGCATGGAGTGTTTCAATTACTTAGTGCGTGGGCCGATGGACCTTCTATGGTTACTCAA TGTCCAATAACCCCTGGAGGTAAATACACCTACAAATTTAAACTCCTCCAGCAAGAGGGTACGCTATGGTGGCATGCTCATTTCAGTCTTCTCCGAGCAA CAGTTTATGGGGCACTCATTATCCGTCCAAGATCTGGTCATCCTTACCCTTTCCCTAAACCCAACAAAGAAGTTCCAATTCTATTAGGAGAGTGGTGGAA TGGTGATGTCGTTGGTATCGAAAGGAAGGCAGCTGCCACTGGTGCATCACCTAAAATTTCGGATGCCTACACCATAAATGGACTCCCTGGGGATCTCTAC AATTGCTCTCAAGACAGAATGTACAAGCTTAAGGTGCAGAAAGGGAAGACTTATCTCCTCCGAATAATCAACGCTGCCCTCGATAACCAGCTCTTTTTCA TGATAGCCAATCATAATATGACAGTCGTTGCTGTCGATGCAGGGTACACGGTACCCTATGTCACGGATGTTGTTGTCACCGGCCCCGGCCAGACCGTGGA CGTTCTTCTCGCAGCCGACCAGGAAGTGGGGTCTTATTTCATGGCTGCAAACTCATATGCTAGTGCTCGTCCTGCTGCACCCTTTGATAATACAACCACA AGAGGAATTGTTGTCTACGAAGGTGCACCCACATCAGCAACTCCGATAATGCCACGAATGCCTGCGTTCAATGACACCCCCACTGCCCACAAGTTCTTCA CCAGCATTACTGGCCTTGCTGGTGGGCCTCATTGGGTCCCAGTCCCACGTCAAATTGATGAGCACATGTTTGTGACAGTAGGCTTGGGGCTCTCAATTTG TCCAACATGTTCAAATGGGACGCGACTCTCTGCTAGCATGAACAATTTCTCTTTTGCGCGCCCTTCAAGTTTGTCAATGTTGCAAGCCTTCTTTTTCAAT GTGAGTGGAATCTACACTCCTGACTTCCCTGATACTCCTCCTATCAAATTTGACTACACTAATGCCATCAACGCCCAAAATCTATCCCTGTTATTCACAC CAAAATCAACAAGTGTGAAGGTGTTGAAGTATAACGCTACGGTGGAGATGGTGTTACAGAACACAGCCTTCCTTGGAGTGGAGAATCATCCCATACATCT TCATGGTTTCACTTTCCATGTGTTGGCTCAAGGGTTTGGAAATTATGATCCTGTCAACGACCATAAGAATTTCAACCTTATCAATCCACTATCACGTAAC ACTATTAATGTGCCGGTGGGAGGATGGGCAGTCATAAGATTTACAGCCAATAATCCAGGTGTGTGGTTCTTTCACTGTCATCTGGAAGCGCACTTGTCCA TGGGATTAGCCACCGCTTTCGTGGTTGAGAATGGACCGACGCCAGAGTCTACTTTGCCACCACCTCCAGTTGATCTGCCTCAGTGTTAA
AA sequence Show only first row Show all	>Potri.016G106300.1 pacid=42809096 polypeptide=Potri.016G106300.1.p locus=Potri.016G106300 ID=Potri.016G106300.1.v4.1 annot-version=v4.1 MLRLLFLLTCALALLASSVASAAIVEHSFYVKNLTVRRLCSEQVVTAVNGSLPGPTLRVREGDTLIVHVFNKSPYNLTIHWHGVFQLLSAWADGPSMVTQ CPITPGGKYTYKFKLLQQEGTLWWHAHFSLLRATVYGALIIRPRSGHPYPFPKPNKEVPILLGEWWNGDVVGIERKAAATGASPKISDAYTINGLPGDLY NCSQDRMYKLKVQKGKTYLLRIINAALDNQLFFMIANHNMTVVAVDAGYTVPYVTDVVVTGPGQTVDVLLAADQEVGSYFMAANSYASARPAAPFDNTTT RGIVVYEGAPTSATPIMPRMPAFNDTPTAHKFFTSITGLAGGPHWVPVPRQIDEHMFVTVGLGLSICPTCSNGTRLSASMNNFSFARPSSLSMLQAFFFN VSGIYTPDFPDTPPIKFDYTNAINAQNLSLLFTPKSTSVKVLKYNATVEMVLQNTAFLGVENHPIHLHGFTFHVLAQGFGNYDPVNDHKNFNLINPLSRN TINVPVGGWAVIRFTANNPGVWFFHCHLEAHLSMGLATAFVVENGPTPESTLPPPPVDLPQC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09220		LAC7	laccase 7 (.1)		Potri.016G106300 [exp]	0	1
AT3G09220		LAC7	laccase 7 (.1)		Potri.016G106100 [exp]	2.00	0.9935
AT3G09220		LAC7	laccase 7 (.1)		Potri.016G106000 [exp]	2.82	0.9931
AT2G03360			Glycosyltransferase family 61 ...		Potri.010G162100 [exp]	3.46	0.9883
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Potri.001G208600 [exp]	5.29	0.9738	Pt-WRKY9.1
AT5G20050			Protein kinase superfamily pro...		Potri.018G070800 [exp]	5.47	0.9505
AT4G10380		AtNIP5;1, NIP5;...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Potri.011G146900 [exp]	6.32	0.9139
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.006G272600 [exp]	8.00	0.9709
AT2G46495			RING/U-box superfamily protein...		Potri.002G170300 [exp]	9.94	0.9511
AT2G35930		PUB23	plant U-box 23 (.1)		Potri.001G216100 [exp]	13.00	0.9438
AT1G49570			Peroxidase superfamily protein...		Potri.009G106400 [exp]	14.69	0.9448

Compare expression of checked genes

Potri.016G106300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.