Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	AUX1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38120 796 / 0 MAP1, WAV5, PIR1, AUX1 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) AT5G01240 771 / 0 LAX1 like AUXIN RESISTANT 1 (.1.2) AT2G21050 727 / 0 LAX2 like AUXIN RESISTANT 2 (.1) AT1G77690 716 / 0 LAX3 like AUX1 3 (.1) AT5G41800 55 / 7e-08 Transmembrane amino acid transporter family protein (.1) AT1G08230 52 / 5e-07 ATGAT1 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) AT1G77380 42 / 0.0008 AAP3, ATAAP3 amino acid permease 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G098300 [exp] 851 / 0 AT2G38120 795 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Potri.010G191000 [exp] 796 / 0 AT2G38120 734 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Potri.008G066400 [exp] 782 / 0 AT2G38120 746 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Potri.009G132100 [exp] 729 / 0 AT2G21050 832 / 0.0 like AUXIN RESISTANT 2 (.1) Potri.004G172800 [exp] 727 / 0 AT2G21050 829 / 0.0 like AUXIN RESISTANT 2 (.1) Potri.002G087000 [exp] 720 / 0 AT1G77690 745 / 0.0 like AUX1 3 (.1) Potri.005G174000 [exp] 714 / 0 AT1G77690 776 / 0.0 like AUX1 3 (.1) Potri.003G138100 [exp] 70 / 1e-12 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.009G149900 [exp] 67 / 8e-12 AT1G08230 573 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004831 [exp] 810 / 0 AT2G38120 853 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Lus10002498 [exp] 801 / 0 AT2G38120 842 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Lus10028278 [exp] 775 / 0 AT2G38120 801 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Lus10040212 [exp] 768 / 0 AT2G38120 798 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Lus10025057 [exp] 724 / 0 AT2G21050 866 / 0.0 like AUXIN RESISTANT 2 (.1) Lus10034488 [exp] 720 / 0 AT2G21050 864 / 0.0 like AUXIN RESISTANT 2 (.1) Lus10028078 [exp] 713 / 0 AT1G77690 810 / 0.0 like AUX1 3 (.1) Lus10025628 [exp] 713 / 0 AT1G77690 808 / 0.0 like AUX1 3 (.1) Lus10003903 [exp] 63 / 2e-10 AT5G41800 695 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10009386 [exp] 60 / 2e-09 AT1G08230 453 / 4e-157 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01490 [poplar] [flax] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Potri.016G113600.1 pacid=42810070 polypeptide=Potri.016G113600.1.p locus=Potri.016G113600 ID=Potri.016G113600.1.v4.1 annot-version=v4.1 ATGTTGTCTCAGAAGCAAGCAGAAGAAGCAATTGTTTCAAACTACAGCGAGACAGATCAACATGAAGGCAAGGAAGAAGAGGCAGAAGAGAACCACTCTT TGTTTAGTATCAAGAGTGCTCTTTGGCATGGTGGGTCTGTCTGGGATGCCTGGTTTAGCTGTGCCTCCAATCAAGTAGCACAAGTACTGCTGACACTTCC ATACTCCTTCTCTCAGCTTGGTATGCTGTCAGGGATTTTGTTTCAGATATTCTATGGGATTGTAGGAAGCTGGACAGCTTACCTCATAAGTGTGCTTTAC ATTGAGTACAGAAGCAGAAAGGAGAAAGAGAACGTTAACTTCAAGAACCATGTCATACAGTGGTTTGAAGTGCTTGATGGGCTACTGGGTCCATACTGGA AGGCATTAGGACTTGCCTTCAACTGTACTTTCTTACTCTTTGGATCTGTCATTCAACTTATTGCTTGTGCAAGTAATATTTACTACATCAATGACCATAT GGACAAGAGGACTTGGACTTACATTTTTGGAGCTTGCTGTGCCACAACAGTTTTTATACCCTCTTTTCATAACTACCGTATTTGGTCTTTTCTTGGACTT GGCATGACCACATATACCGCCTGGTACATGGCCATAGCAGCTCTTATTCATGGCCAAGTAGGAGTCGTCACGCATTCTGCTCCGACAAAGTTGGTGCTTT ACTTCACCGGAGCCACCAACATCCTCTACACCTTTGGTGGACATGCTGTCACCGTGGAAATCATGCATGCCATGTGGAAGCCCCAGAAATTCAAGTATAT TTACTTGATGGCTACTCTCTACGTGTTCACACTAACCATTCCTTCTGCCACCGCCGTCTACTGGGCCTTTGGAGACCAACTCCTCAACCATTCCAACGCC TTTGCTCTCCTCCCCAGGAATGGTTTCCGCGATGCTGCGGTTATCCTCATGCTCATTCACCAGTTTATCACATTTGGGTTTGCATGCACCCCATTGTACT TTGTGTGGGAGAAGGTGATAGGGATGCATGACACAAAGAGTATTTGCTTGAGGGCACTTGCAAGGCTACCGGTGGTGATCCCAATATGGTTTTTGGCTAT AATCTTCCCGTTCTTTGGACCCATTAACTCAGCAGTCGGTGCTCTTCTGGTCAGCTTCACAGTCTACATTATCCCATCTCTAGCCCACATGCTCACTTAC AGAAAATCCTCTGCTAGACAGAATGCTGCAGAGAAGCCTCCTTTCTTCATGCCAAGCTGGACCGCCATGTATGTTATCAACACCTTCGTGGTGGTGTGGG TGCTGGTGGTTGGTTTTGGGTTCGGTGGATGGGCTAGCATGACCAACTTCGTTAGGCAGGTGGACACGTTCGGACTCTTCGCAAAGTGCTATCAATGCAA GCCAGCAGGGGCAGCACCACCGCGTCCTCACTGA
AA sequence Show only first row Show all	>Potri.016G113600.1 pacid=42810070 polypeptide=Potri.016G113600.1.p locus=Potri.016G113600 ID=Potri.016G113600.1.v4.1 annot-version=v4.1 MLSQKQAEEAIVSNYSETDQHEGKEEEAEENHSLFSIKSALWHGGSVWDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGIVGSWTAYLISVLY IEYRSRKEKENVNFKNHVIQWFEVLDGLLGPYWKALGLAFNCTFLLFGSVIQLIACASNIYYINDHMDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL GMTTYTAWYMAIAALIHGQVGVVTHSAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLMATLYVFTLTIPSATAVYWAFGDQLLNHSNA FALLPRNGFRDAAVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTY RKSSARQNAAEKPPFFMPSWTAMYVINTFVVVWVLVVGFGFGGWASMTNFVRQVDTFGLFAKCYQCKPAGAAPPRPH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Potri.016G113600 [exp]	0	1	AUX1.1
AT1G55550			P-loop containing nucleoside t...		Potri.003G223800 [exp]	1.00	0.8864
AT2G31800			Integrin-linked protein kinase...		Potri.017G007800 [exp]	7.74	0.7731
AT5G43230			unknown protein		Potri.008G177500 [exp]	7.87	0.8159
AT4G14220		RHF1A	RING-H2 group F1A (.1)		Potri.010G092300 [exp]	9.48	0.7698
AT4G35300		TMT2	tonoplast monosaccharide trans...		Potri.005G255400 [exp]	9.53	0.7560
AT5G46940			Plant invertase/pectin methyle...		Potri.014G044100 [exp]	10.48	0.7739
AT5G26010			Protein phosphatase 2C family ...		Potri.006G232700 [exp]	11.48	0.7258
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Potri.003G113000 [exp]	12.12	0.7728
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.019G006570 [exp]	12.36	0.7439
AT4G36880		CP1	cysteine proteinase1 (.1)		Potri.005G141600 [exp]	12.48	0.7181

Compare expression of checked genes

Potri.016G113600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.