Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GRAS66
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03450 85 / 3e-17 GRAS RGL2 RGA-like 2 (.1) AT1G66350 79 / 3e-15 GRAS RGL1 RGA-like 1 (.1) AT1G55580 77 / 1e-14 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT5G17490 77 / 1e-14 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT4G08250 76 / 2e-14 GRAS GRAS family transcription factor (.1) AT2G01570 70 / 2e-12 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT5G66770 70 / 2e-12 GRAS GRAS family transcription factor (.1) AT3G50650 69 / 2e-12 GRAS SCL7 GRAS family transcription factor (.1) AT3G13840 66 / 4e-11 GRAS GRAS family transcription factor (.1) AT5G48150 64 / 1e-10 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G075500 [exp] 365 / 2e-121 AT4G08250 85 / 2e-17 GRAS family transcription factor (.1) Potri.005G175300 [exp] 110 / 8e-26 AT4G08250 467 / 2e-161 GRAS family transcription factor (.1) Potri.002G086100 [exp] 100 / 2e-22 AT4G08250 468 / 6e-162 GRAS family transcription factor (.1) Potri.007G026300 [exp] 89 / 2e-18 AT5G66770 589 / 0.0 GRAS family transcription factor (.1) Potri.005G123800 [exp] 87 / 5e-18 AT5G66770 650 / 0.0 GRAS family transcription factor (.1) Potri.005G190300 [exp] 83 / 8e-17 AT4G08250 138 / 7e-36 GRAS family transcription factor (.1) Potri.015G091200 [exp] 82 / 3e-16 AT1G66350 256 / 4e-79 RGA-like 1 (.1) Potri.015G008300 [exp] 81 / 3e-16 AT1G55580 398 / 3e-136 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.012G093900 [exp] 77 / 7e-15 AT1G66350 257 / 2e-79 RGA-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002204 [exp] 425 / 5e-144 AT3G03450 87 / 7e-18 RGA-like 2 (.1) Lus10012236 [exp] 421 / 2e-142 AT3G03450 83 / 1e-16 RGA-like 2 (.1) Lus10022664 [exp] 391 / 2e-131 AT4G08250 81 / 3e-16 GRAS family transcription factor (.1) Lus10002205 [exp] 295 / 2e-93 AT3G60630 71 / 1e-12 LOST MERISTEMS 2, ARABIDOPSIS THALIANA HAIRY MERISTEM 2, GRAS family transcription factor (.1) Lus10040166 [exp] 283 / 3e-83 AT3G60330 1533 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10012237 [exp] 256 / 1e-80 AT3G60630 66 / 2e-11 LOST MERISTEMS 2, ARABIDOPSIS THALIANA HAIRY MERISTEM 2, GRAS family transcription factor (.1) Lus10008316 [exp] 115 / 3e-27 AT4G08250 444 / 5e-152 GRAS family transcription factor (.1) Lus10028056 [exp] 104 / 6e-24 AT4G08250 416 / 5e-143 GRAS family transcription factor (.1) Lus10024014 [exp] 87 / 8e-18 AT5G66770 590 / 0.0 GRAS family transcription factor (.1) Lus10041740 [exp] 86 / 2e-17 AT5G66770 631 / 0.0 GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.016G122500.1 pacid=42810075 polypeptide=Potri.016G122500.1.p locus=Potri.016G122500 ID=Potri.016G122500.1.v4.1 annot-version=v4.1 ATGATGCAACCAGAAGTTTTCCAGTCTTCATGGCCATTCTACAGGGTCATAAGCTCAGCTAATCTTGACCAACTTGGTTTCTATGGTACTGACATGGATG CGTATGTTGATGCCTGTCAATTCTCTTCTTCGTTTGCCAACAATGAGGATATCTATGATATTTCCTCAATGTTTCCTGCAGTTTTCAACGGTGATCAGTC TGTCCAATCCCCAGCTTCTTCTGATGACTTCCAAGTCCAGGTACCTTGCGTTGAAGATTTTTTGATGAAGGGCTTTGAGCCTAATCTCATCAAGGAAATG GAGCTTATATTCTGTGAGAGCGAGGGAAATTCTTCTTCACGGGAGCTATCCAGTGAAGGGGAAAATGTTTGGAGTCCTAACCCTTCAATAAAATCAAGTG AAGCATCCATGGACACCACACCAATTCCACAGTCAACACTTGAATTACCAGGGGAAGAGCTACAGCTTGAAAATCAAGTGAGTCTCTTTCATTTACTCAA GGCTTATGGAGAAGCCATGGATGGAGGACAGAGTGAGCTTGCAGATGTGATCATGAGATGTGTAAGTGAGAAAGTTAGCCCAGCTGGTGAAGCCTTTGAG TGTCTCGCCTTTAATCTATGCCAAGATCTTGAGAAGCAAGGGGATTATATAAAACGAGAATCCTGCAGGAATTTTGAGGCAGCTTTCAGGGCATTCTACC AAATTTTCCCATATGGAAGATTTGCTCACTTTGCTGCCAATTCAGCAATCCTTGAAGCTATTCCAGCTGATGCAGAGACAATACACATAGTGGACTTCGA TCTTGGGGAAGGCATTCAATGGCCTCCATTGATTGAGGCCTTGGCACACCAACAAAAGGCAGTGAGATTGACAGCAATAAAATGGAAAAAGGATGACTGC AATTGGGCTCCCATGGTCTGGAGTTTCGATGCGGCGAAAAGGAGACTTCTTGATCATGCAAGATACTTTGGTCTAAACTTGAAGGTAGAGGAGATGGGAA TTGAAGATTTGGCGAGTGAGGAAAAGAAGGCAAATAAAAGAGGTGTTGGGAAAGAATGGTTAGTCTTCAACAGCATGCTCAGACTTCCACACATGGGAAG GGCAAGGAGCAGACAGCTTGTTGAACAGTTCCTAAGGGTAGCCAAAGCCTTGTTGGCCAATTCTGCCTTCTGCAACTCCAGCAGCAGGGGAATTATTACT TTTGGTGATGGCGATTCCTGTGAAAACTTGAAAAACAGTTCCGATTTCGGATCATTTTTCGAAGGGCATATGGCGCATTACAAAGCCCTGCTTGATTCAA TCGAGTCCAAATTCCCAGTTCATCTCACAGAAGCAAGAATGGCATTGGAGTGTCTGTTCGTGGCACCTTACATCTCTTCCCAGGATTGGTACCAAAAGTG GGTGGAGATGAAGCAAGGTTGCAATCTTGAGCTGGGAAATGGGTTAGAAGGATGGAGGGTGAGCAGAGTGAACCTGGAGGAAGCTAGAGAAATGGTGGGA GGCAAGCAAAGTTCTTATGGAGTAAAGATCGGGGGAGACCTGGGAAATGAGATGATTTTAGAGTGGAAATCAACTCCGTTAGTCAGAGTTTCTACATGGA GAAATTAA
AA sequence Show only first row Show all	>Potri.016G122500.1 pacid=42810075 polypeptide=Potri.016G122500.1.p locus=Potri.016G122500 ID=Potri.016G122500.1.v4.1 annot-version=v4.1 MMQPEVFQSSWPFYRVISSANLDQLGFYGTDMDAYVDACQFSSSFANNEDIYDISSMFPAVFNGDQSVQSPASSDDFQVQVPCVEDFLMKGFEPNLIKEM ELIFCESEGNSSSRELSSEGENVWSPNPSIKSSEASMDTTPIPQSTLELPGEELQLENQVSLFHLLKAYGEAMDGGQSELADVIMRCVSEKVSPAGEAFE CLAFNLCQDLEKQGDYIKRESCRNFEAAFRAFYQIFPYGRFAHFAANSAILEAIPADAETIHIVDFDLGEGIQWPPLIEALAHQQKAVRLTAIKWKKDDC NWAPMVWSFDAAKRRLLDHARYFGLNLKVEEMGIEDLASEEKKANKRGVGKEWLVFNSMLRLPHMGRARSRQLVEQFLRVAKALLANSAFCNSSSRGIIT FGDGDSCENLKNSSDFGSFFEGHMAHYKALLDSIESKFPVHLTEARMALECLFVAPYISSQDWYQKWVEMKQGCNLELGNGLEGWRVSRVNLEEAREMVG GKQSSYGVKIGGDLGNEMILEWKSTPLVRVSTWRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Potri.016G122500 [exp]	0	1	GRAS66
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.011G026200 [exp]	8.48	0.9011
AT5G24860		ATFPF1, FPF1	ARABIDOPSIS FLOWERING PROMOTIN...		Potri.008G209300 [exp]	8.77	0.8797
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.011G025966 [exp]	13.26	0.8987
AT2G29060	GRAS		GRAS family transcription fact...		Potri.009G033100 [exp]	14.83	0.8844
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.011G026100 [exp]	14.83	0.8969
AT2G45750			S-adenosyl-L-methionine-depend...		Potri.015G139000 [exp]	15.29	0.8937
AT1G66920			Protein kinase superfamily pro...		Potri.012G003301 [exp]	16.12	0.8505
AT4G12840			Protein of unknown function (D...		Potri.014G175800 [exp]	22.18	0.8785
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.011G026032 [exp]	22.27	0.8857
					Potri.005G129350 [exp]	22.36	0.8433

Compare expression of checked genes

Potri.016G122500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.