Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10960 845 / 0 ATAZG1 AZA-guanine resistant1 (.1) AT5G50300 485 / 1e-166 ATAZG2 ARABIDOPSIS THALIANA AZA-GUANINE RESISTANT2, Xanthine/uracil permease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G083300 [exp] 858 / 0 AT3G10960 903 / 0.0 AZA-guanine resistant1 (.1) Potri.015G090000 [exp] 514 / 4e-178 AT5G50300 736 / 0.0 ARABIDOPSIS THALIANA AZA-GUANINE RESISTANT2, Xanthine/uracil permease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030548 [exp] 806 / 0 AT3G10960 881 / 0.0 AZA-guanine resistant1 (.1) Lus10012895 [exp] 790 / 0 AT3G10960 873 / 0.0 AZA-guanine resistant1 (.1) Lus10009102 [exp] 780 / 0 AT3G10960 780 / 0.0 AZA-guanine resistant1 (.1) Lus10025246 [exp] 777 / 0 AT3G10960 780 / 0.0 AZA-guanine resistant1 (.1) Lus10040894 [exp] 486 / 2e-167 AT5G50300 691 / 0.0 ARABIDOPSIS THALIANA AZA-GUANINE RESISTANT2, Xanthine/uracil permease family protein (.1) Lus10034287 [exp] 56 / 1e-09 AT5G50300 91 / 1e-22 ARABIDOPSIS THALIANA AZA-GUANINE RESISTANT2, Xanthine/uracil permease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF00860 [poplar] [flax] Xan_ur_permease Permease family
Representative CDS sequence Show only first row Show all	>Potri.016G133800.1 pacid=42810074 polypeptide=Potri.016G133800.1.p locus=Potri.016G133800 ID=Potri.016G133800.1.v4.1 annot-version=v4.1 ATGCCCTCTTTGATACAAGCTAAAGTCACAAAAAGCTCTTCAGGTTCTGCAATGGCGACTCCACCACCGCCACCCTCCTCTCTTCTGACTCAACTAAATG CTTTCATGGAGAAAAGTCAAGTTGGAAAACGTTTCAAACTCGCCGAGAGGAAAACCACCTTCACAACGGAGGTTCGAGCCGGGACAGCCACGTTCCTTAC CATGGCCTACATCCTAGCGGTCAACGCCAGCATCCTTGCTGACTCTGGTGGCACATGCAGTGTATTAGATTGCATAACGGTGTGTTCAAACCCCACAATC CCTCTTGCAAACTGCACCGCTCCAACTCACCAAATCATCAAGCCTGACGAATCTTGTAAATTCGATCCTGTTAACCGTGGCTATGCAGACTGCCTGCAAA AGACACGTAAAGATCTTATTGTAGCCACCGTAGCTTCTTCTTTAATAGGATGTCTAATTATGGGTCTGCTAGCTAATCTTCCTTTAGCTTTGGCACCTGG TATGGGCACCAATGCTTATTTTGCCTATACAGTCGTGGGGTTTCATGGGTCAGGCAACGTACCATACAAAAGTGCCTTAACAGCTATTTTCATTGAAGGG TTAGTTTTTCTCTTTATTTCTTCTATTGGGTTACGTGCTAAGCTAGCTAAACTCGTTCCACAACCGGTCCGGATCAGTAGCTCAGCAGGAATTGGCTTGT TCCTTGCCTTTATCGGGCTACAAAATAATCAAGGTATTGGTCTTGTTGGGTATAGTTCATCAACATTGGTCACAATTGGAGCCTGTCCAAGATCTTCTCG TGCAATGTTAGCCCCCGTTGTAATGATGGCTAATGGCACCGTTAGTTTGATCCAAAACGGCACCATATCAAGTGATATTATGTGTCTCAATGGAAGGATG GAGAGTCCAACATTTTGGCTTGGCATTCTTGGCTTTGTGATAATTGCATATTGTCTAGTGAAAAATGTAAAAGGGGCTATGATATATGGTATAGTTATCG TAACGGTGATTTCATGGTTTCGTAACACAGCAGTTACGGCGTTTCCTTACACAGAGACAGGAAATTCTTCTTATGAATACTTCAAAAAGGTGGTTGATGT GCATGTGATAGAGAAAACAGCTGGGGCCTTGAGTTTTGAGGGTATGAGTAAAGGGAGTTTCTGGGAAGCATTGGTCACATTTTTATATGTTGACATACTC GATACCACTGGGACATTATATTCAATGGCTAAATTTGCTGGTTTCACCGATGTTAATGGAGATTTTGAAGGTCAATACTTTGCATTCATGTCGGATGCTG CATCAATTGTAGTAGGGTCACTTCTCGGCACTTCTCCGGTGACCACATTTGTTGAATCATCGACAGGGATCAGAGAAGGTGGACGAACAGGCCTAACAGC ATTGATCGTGGCAGGATATTTTTTTATGGCTTTTTTCTTTACCCCGTTATTGGCATCAATTCCAGCATGGGCAGTAGGGCCACCATTGATCTTGGTGGGA GTTTTGATGATGAGATCTGTGGTGGAGATTAAATGGGATGATATGAGACAAGCCATCCCTGCATTTATTACAATGATAATGATGCCATTGACATATTCTA TAGCATATGGTCTCATTGGAGGTATTGCTACTTACATTATCTTGCATCTTTGGGACTGGGGTGAAGCCTTTTTGGGAAAAACAGGGCTTGTCAAAGGAAT GAAAGGAGATCATATGCTTAATGAGGAAACTAATGGAAATGGCCATGATGGTAAAGTGCTTGAAGCAGTTTAG
AA sequence Show only first row Show all	>Potri.016G133800.1 pacid=42810074 polypeptide=Potri.016G133800.1.p locus=Potri.016G133800 ID=Potri.016G133800.1.v4.1 annot-version=v4.1 MPSLIQAKVTKSSSGSAMATPPPPPSSLLTQLNAFMEKSQVGKRFKLAERKTTFTTEVRAGTATFLTMAYILAVNASILADSGGTCSVLDCITVCSNPTI PLANCTAPTHQIIKPDESCKFDPVNRGYADCLQKTRKDLIVATVASSLIGCLIMGLLANLPLALAPGMGTNAYFAYTVVGFHGSGNVPYKSALTAIFIEG LVFLFISSIGLRAKLAKLVPQPVRISSSAGIGLFLAFIGLQNNQGIGLVGYSSSTLVTIGACPRSSRAMLAPVVMMANGTVSLIQNGTISSDIMCLNGRM ESPTFWLGILGFVIIAYCLVKNVKGAMIYGIVIVTVISWFRNTAVTAFPYTETGNSSYEYFKKVVDVHVIEKTAGALSFEGMSKGSFWEALVTFLYVDIL DTTGTLYSMAKFAGFTDVNGDFEGQYFAFMSDAASIVVGSLLGTSPVTTFVESSTGIREGGRTGLTALIVAGYFFMAFFFTPLLASIPAWAVGPPLILVG VLMMRSVVEIKWDDMRQAIPAFITMIMMPLTYSIAYGLIGGIATYIILHLWDWGEAFLGKTGLVKGMKGDHMLNEETNGNGHDGKVLEAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10960		ATAZG1	AZA-guanine resistant1 (.1)		Potri.016G133800 [exp]	0	1
AT5G50000			Protein kinase superfamily pro...		Potri.015G074400 [exp]	8.06	0.8428
AT5G59350			unknown protein		Potri.010G206100 [exp]	13.41	0.8144
AT3G11590			unknown protein		Potri.016G074300 [exp]	23.74	0.8184
AT5G58520			Protein kinase superfamily pro...		Potri.009G075900 [exp]	28.56	0.7867
AT1G15760			Sterile alpha motif (SAM) doma...		Potri.001G204600 [exp]	32.72	0.8068
AT3G49750		AtRLP44	receptor like protein 44 (.1)		Potri.014G012300 [exp]	32.98	0.7426
AT1G79340		AtMCP2d, ATMC4	metacaspase 2d, metacaspase 4 ...		Potri.010G175000 [exp]	33.39	0.8101
AT5G64667		IDL2	inflorescence deficient in abs...		Potri.005G057400 [exp]	34.92	0.8018
AT1G15530			Concanavalin A-like lectin pro...		Potri.015G083300 [exp]	35.00	0.7701
AT2G02170			Remorin family protein (.1.2)		Potri.010G098000 [exp]	45.71	0.7731

Compare expression of checked genes

Potri.016G133800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.