Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54220 679 / 0 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT5G41920 410 / 2e-136 GRAS GRAS family transcription factor (.1) AT1G66350 231 / 9e-67 GRAS RGL1 RGA-like 1 (.1) AT3G03450 231 / 2e-66 GRAS RGL2 RGA-like 2 (.1) AT1G14920 219 / 4e-62 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT5G17490 214 / 2e-60 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT2G01570 214 / 4e-60 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT2G04890 207 / 2e-59 GRAS SCL21 SCARECROW-like 21 (.1) AT5G48150 207 / 2e-58 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G63100 210 / 3e-58 GRAS GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G114200 [exp] 1131 / 0 AT3G54220 639 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.006G021400 [exp] 452 / 9e-152 AT5G41920 509 / 2e-180 GRAS family transcription factor (.1) Potri.016G018900 [exp] 447 / 6e-150 AT5G41920 506 / 5e-179 GRAS family transcription factor (.1) Potri.002G036100 [exp] 427 / 3e-141 AT3G54220 441 / 9e-149 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.005G226800 [exp] 414 / 3e-136 AT3G54220 424 / 3e-142 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.001G326000 [exp] 328 / 3e-101 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.017G125200 [exp] 239 / 7e-69 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 239 / 8e-69 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 238 / 2e-68 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016496 [exp] 618 / 0 AT3G54220 663 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10040734 [exp] 607 / 0 AT5G41920 410 / 1e-137 GRAS family transcription factor (.1) Lus10003540 [exp] 413 / 1e-135 AT3G54220 423 / 1e-141 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10033912 [exp] 405 / 3e-132 AT3G54220 414 / 6e-138 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10041540 [exp] 328 / 7e-101 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 330 / 9e-101 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10010462 [exp] 278 / 1e-84 AT5G41920 327 / 2e-108 GRAS family transcription factor (.1) Lus10033583 [exp] 238 / 1e-68 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10017626 [exp] 236 / 8e-68 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10022418 [exp] 220 / 1e-63 AT1G50420 592 / 0.0 scarecrow-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.016G143833.1 pacid=42809272 polypeptide=Potri.016G143833.1.p locus=Potri.016G143833 ID=Potri.016G143833.1.v4.1 annot-version=v4.1 ATGTTGAGGAAGAGGATGGCTTCTGAGATGATGGAAGTGCAATCAGCGATTACTCCCCAAAATCATCAGAGGTTATCTCGAGGTAACATCATCAGTAGCA CCAACGTCTATTCACTTTCAATATCAGACAACAACAACAACGATGATGATGATGATGTTATTGGTATGACTAGAAGTACTGGTGCCTCTTCTTTTACAAG TTGTTCCAACAACAATAATATTAACCCTAATAACCCCAACTCAATCTTATATCCAGTCCTCAACTACTCTACTATGACTTCTATGCTACCTTCTTCCACG AACTTGACAGCAATTACGTCAGGCGTGTCTGCTTCTCTGTCTGTTTCTGAGTTCTTGTCTCCTACAGTACTTTCCACCAACTTAATTACTAGCTGCAACG ACACCCACACCCAATCCCAACTCCCAGCCGTCTGTGGTTTCTCTGGTCTACCCTTGTTCCCTCCAGCTGAAATAAAAAGAAACAATATCCGATCAAACGC TGCCGCCGATCCACCGCCCGGCCTCATCACTACCTCTATTACTGCTCCTACTACTAGTACTCTTGCTTCAGCTTCCATGGAAGATGCCACATCCGCCACT GCTTGGATTGATGGCCTCATAAAGGACCTACTCCACACTTCCACCAACGTGTCCATTCCTCAGCTCATTCAGAACGTGAGGGAGATCATCTACCCTTGCA ACCCCAATCTGGCCTCCCTCCTCGAGTACAGGCTCCGGTCTTTGACAGACCCAATAATCCCGCCCAATATTCTCCCGGTGGAGAGGAGTAGGAATAAGGA GGCAGCCGCAACAGTACCATTACCGCTTCAGACCCAGAGGCGTTGCAATCAAGGTCATGCCTCTAATTCTGGGCTCACTCTTGATCTTGACAATATCGTC TCTAATTCAGCTCCTCCAGTTTCTTCACATGTTAGTCACTACTCTAACTGGGGACCGACGCCACCTCTCATCATCTGCCAACCAAACATCCAACAGCAAC ACCAGCAGCCACAAATCCACCTTGTTCATCATGATCAGCATCTGCAACAACAGCAGCAGAAGCAACAAGAGAGCCCTTCTTCTACTTCCAATGTTACACC AACTATTCTAGCATTAAATCAAGGACAACCTCCACAACAGCAAGCACAAGATCAGCAGCAGGAAAAATCATCTTCTGCGGAGACAGAACAGGTAAGCAGC AGCACATCCCCTCCCTCTTCATCAGCAGCAGCCAGCCGAGATAAGAAAGAAGAGATGCGGCAGCAAAAGAGAGACGAAGAAGGCTTGCACCTTCTGACCT TACTGCTCCAATGCGCGGAGGCCGTCTCCGCTGATAATTTTGAGGAAGCTAATAAGATGCTACTTGAGATCTCGGAGCTGTCGACGCCATTTGGAACTTC AGCGCAGCGAGTGGCTGCTTACTTCTCGGAGGCTATGTCAGCAAGGCTGGTCAGCTCTTGCTTGGGGATATACGCCACGCTTCCTTCAATGCCCCAAAGC CATACCCAGAAGATGGCTTCGGCCTTTCAGGTGTTCAATGGGATTGGCCCTTTCGTCAAGTTCTCTCATTTCACAGCCAACCAAGCGATACAAGAAGCGT TTGAAAGGGAAGAGAGAGTCCACATCATAGATCTGGACGTCATGCAAGGTTTGCAGTGGCCTGGGCTATTTCATATCCTAGCATCTAGGCCAGGTGGACC ACCATATGTCCGCTTGACCGGGCTGGGGACCTCTTTGGAGGCTCTTGAAGCAACGGGGAAACGTCTGTCTGATTTCGCACACAAACTGGGACTTCCCTTT GAGTTCATTCCAGTGGCCGAAAAGGTTGGAAATTTGGAGCCGGAGAGGCTTAATGTGAGCAAGAGGGAGGCTGTGGCCGTCCACTGGTTGCAACACTCGC TCTACGATGTCACCGGTTCCGATACAAATATGCTTTGTCTGTTGCAAAGGTTGGCACCAAAAGTAGTGACTGTGGTAGAACAGGACCTAAGCCATGCGGG ATCCTTCCTGGGAAGGTTTGTGGAGGCCATACACTACTACTCCGCACTGTTCGACTCCTTGGGAGCAAGCTATGGGGAGGAGAGTGAGGAGAGGCATGTA GTGGAGCAGCAGTTGCTCTCCAGAGAGATACGCAATGTATTGGCCGTGGGAGGTCCTTCCAGAAGTGGGGATGTCAAGTTCCACAACTGGAGGGAAAAAC TACAACAGTCCGGGTTCAAAGGCATCTCTCTTGCTGGGAATGCTGCTACACAAGCCACTTTGCTCCTTGGCATGTTCCCCTCTGATGGTTATACATTAGT GGAGGATAATGGCACCCTCAAGCTTGGTTGGAAAGACCTTTGCTTGCTCACTGCTTCTGCCTGGAGGCCTTTTCACGTTACTATTGAAACTGCTACTACC ACCCCTCGCCACCACCACCACCACCAACAACAACAACAACACCACCACCACCGCTTTGTCACTGCCTAG
AA sequence Show only first row Show all	>Potri.016G143833.1 pacid=42809272 polypeptide=Potri.016G143833.1.p locus=Potri.016G143833 ID=Potri.016G143833.1.v4.1 annot-version=v4.1 MLRKRMASEMMEVQSAITPQNHQRLSRGNIISSTNVYSLSISDNNNNDDDDDVIGMTRSTGASSFTSCSNNNNINPNNPNSILYPVLNYSTMTSMLPSST NLTAITSGVSASLSVSEFLSPTVLSTNLITSCNDTHTQSQLPAVCGFSGLPLFPPAEIKRNNIRSNAAADPPPGLITTSITAPTTSTLASASMEDATSAT AWIDGLIKDLLHTSTNVSIPQLIQNVREIIYPCNPNLASLLEYRLRSLTDPIIPPNILPVERSRNKEAAATVPLPLQTQRRCNQGHASNSGLTLDLDNIV SNSAPPVSSHVSHYSNWGPTPPLIICQPNIQQQHQQPQIHLVHHDQHLQQQQQKQQESPSSTSNVTPTILALNQGQPPQQQAQDQQQEKSSSAETEQVSS STSPPSSSAAASRDKKEEMRQQKRDEEGLHLLTLLLQCAEAVSADNFEEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYATLPSMPQS HTQKMASAFQVFNGIGPFVKFSHFTANQAIQEAFEREERVHIIDLDVMQGLQWPGLFHILASRPGGPPYVRLTGLGTSLEALEATGKRLSDFAHKLGLPF EFIPVAEKVGNLEPERLNVSKREAVAVHWLQHSLYDVTGSDTNMLCLLQRLAPKVVTVVEQDLSHAGSFLGRFVEAIHYYSALFDSLGASYGEESEERHV VEQQLLSREIRNVLAVGGPSRSGDVKFHNWREKLQQSGFKGISLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWRPFHVTIETATT TPRHHHHHQQQQQHHHHRFVTA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Potri.016G143833 [exp]	0	1
AT5G14090			unknown protein		Potri.003G168700 [exp]	2.44	0.9665
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Potri.008G148200 [exp]	2.82	0.9526	ATHB13.2
AT4G00820		IQD17	IQ-domain 17 (.1)		Potri.001G448100 [exp]	3.46	0.9551
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Potri.011G115400 [exp]	7.14	0.9332
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.015G031600 [exp]	7.34	0.9486
AT5G45960			GDSL-like Lipase/Acylhydrolase...		Potri.011G062000 [exp]	8.94	0.9460
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Potri.001G468800 [exp]	9.38	0.9512
AT5G19090			Heavy metal transport/detoxifi...		Potri.014G140600 [exp]	9.53	0.9540
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Potri.012G037200 [exp]	13.07	0.9523
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Potri.002G019900 [exp]	13.96	0.9494	Pt-CLV1.1

Compare expression of checked genes

Potri.016G143833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.