Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80350 226 / 2e-71 FTR, FRC2, FRA2, BOT1, ATKTN1, AAA1, LUE1, ERH3, MAD5 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G45500 75 / 1e-15 AAA-type ATPase family protein (.1.2) AT3G27120 74 / 3e-15 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G27600 68 / 2e-13 ATSKD1, VPS4, SKD1 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) AT3G19740 68 / 3e-13 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G24860 66 / 2e-12 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G09840 66 / 2e-12 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT1G02890 66 / 2e-12 AAA-type ATPase family protein (.1.2) AT5G03340 65 / 4e-12 ATPase, AAA-type, CDC48 protein (.1) AT4G02480 64 / 1e-11 AAA-type ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G176900 [exp] 248 / 7e-80 AT1G80350 809 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G057800 [exp] 244 / 2e-78 AT1G80350 814 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G022300 [exp] 76 / 5e-16 AT2G27600 703 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.010G237100 [exp] 75 / 9e-16 AT2G27600 702 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.009G144300 [exp] 75 / 1e-15 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.004G184500 [exp] 72 / 7e-15 AT2G27600 740 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.008G022216 [exp] 72 / 8e-15 AT2G27600 701 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.014G071900 [exp] 71 / 2e-14 AT2G45500 696 / 0.0 AAA-type ATPase family protein (.1.2) Potri.001G331200 [exp] 71 / 4e-14 AT3G27120 661 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011477 [exp] 233 / 2e-74 AT1G80350 904 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023115 [exp] 233 / 2e-74 AT1G80350 906 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10004891 [exp] 75 / 1e-15 AT2G27600 801 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10020589 [exp] 72 / 1e-14 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10019537 [exp] 70 / 7e-14 AT2G27600 791 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10041563 [exp] 68 / 3e-13 AT3G27120 679 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038499 [exp] 68 / 4e-13 AT2G34560 579 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10013429 [exp] 66 / 2e-12 AT1G50140 1151 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036347 [exp] 65 / 5e-12 AT4G02480 1395 / 0.0 AAA-type ATPase family protein (.1) Lus10010282 [exp] 64 / 8e-12 AT4G02480 1408 / 0.0 AAA-type ATPase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0671 [poplar] [flax] AAA_lid PF09336 [poplar] [flax] Vps4_C Vps4 C terminal oligomerisation domain
Representative CDS sequence Show only first row Show all	>Potri.017G013601.1 pacid=42813736 polypeptide=Potri.017G013601.1.p locus=Potri.017G013601 ID=Potri.017G013601.1.v4.1 annot-version=v4.1 ATGGATTCTCTCAGACAACAGTCACTGACCCCTAGCTTCCTCTACTCCTCTTCTTCCTCCGCTAAACCTTTCTCCCTCTCTAACCTCCTCCACTCCGAAC AACCATCGCTTTCTCCGTCTTCATCGTCGTCAACGACCACTATGGACAGCAAGAGCAGGGAACATGAATCATCTCGAAGGGTCAAATCTGAACTTCTGGT TCAGGTAGATGGTGTAAACAATATTCCCACTTGTGAAGATGGCCATCGGAAAATAGTGATGGTTTTGGCAGCTACAAACTTTTCTTGGGACATAGATGAG GCACTAAGATTGCATATTTATATTCCATTTCCAAATTTTGAGAGTCGTAAAGAGCTTATTAGGATCAATTTGAAAACTATTGAGGTTGCCACTGATGTAG ATATTGATGAAGTTGCTCGCAGGACGGAGGGATACAGTGAAGATGCTCTAACTAACATAACAAGCAAGGCACGAGATGAGATTAAGAACATGCCTAAGGA TGAGATTTCAAATGATCCTGTTGCAATGTGTGATTTTGAAGAAGCCTTGTGGAAGGTTCAGCGCAGTATTTCCCAAGCAGATATGGAGAAGCAGGGGGGG TGGTTCCCGGAATTTGGATCAGCCTAA
AA sequence Show only first row Show all	>Potri.017G013601.1 pacid=42813736 polypeptide=Potri.017G013601.1.p locus=Potri.017G013601 ID=Potri.017G013601.1.v4.1 annot-version=v4.1 MDSLRQQSLTPSFLYSSSSSAKPFSLSNLLHSEQPSLSPSSSSSTTTMDSKSREHESSRRVKSELLVQVDGVNNIPTCEDGHRKIVMVLAATNFSWDIDE ALRLHIYIPFPNFESRKELIRINLKTIEVATDVDIDEVARRTEGYSEDALTNITSKARDEIKNMPKDEISNDPVAMCDFEEALWKVQRSISQADMEKQGG WFPEFGSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Potri.017G013601 [exp]	0	1
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Potri.006G213300 [exp]	3.00	0.9356
AT4G22190			unknown protein		Potri.006G270100 [exp]	3.16	0.9341
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Potri.010G071000 [exp]	4.69	0.9462
AT1G62440		LRX2	leucine-rich repeat/extensin 2...		Potri.018G151000 [exp]	7.07	0.9278
AT5G26830			Threonyl-tRNA synthetase (.1)		Potri.010G096500 [exp]	9.16	0.9227	Pt-THRRS.2
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Potri.014G190701 [exp]	9.79	0.9060
AT3G52590		HAP4, ERD16, UB...	HAPLESS 4, EARLY-RESPONSIVE TO...		Potri.016G077000 [exp]	9.79	0.9347	UBQ1.1
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Potri.001G019400 [exp]	11.83	0.9208
AT4G22190			unknown protein		Potri.006G282500 [exp]	12.44	0.9009
AT1G48440			B-cell receptor-associated 31-...		Potri.015G030801 [exp]	13.74	0.9102

Compare expression of checked genes

Potri.017G013601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.