Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 570 / 0 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 498 / 3e-157 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 224 / 2e-61 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G50180 198 / 1e-52 NB-ARC domain-containing disease resistance protein (.1) AT5G48620 196 / 1e-51 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 184 / 7e-48 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G35450 183 / 2e-47 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G53350 181 / 6e-47 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58390 176 / 3e-45 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46730 170 / 2e-43 NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G015200 [exp] 1524 / 0 AT3G14470 559 / 5e-178 NB-ARC domain-containing disease resistance protein (.1) Potri.017G015300 [exp] 1397 / 0 AT3G14470 572 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G015600 [exp] 1271 / 0 AT3G14470 591 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.007G137101 [exp] 1105 / 0 AT3G14470 616 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G029300 [exp] 737 / 0 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.005G007001 [exp] 719 / 0 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200800 [exp] 711 / 0 AT3G14460 509 / 7e-157 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.T126806 [exp] 690 / 0 AT3G14470 587 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G055600 [exp] 676 / 0 AT3G14470 615 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039540 [exp] 727 / 0 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 703 / 0 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 682 / 0 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 617 / 0 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005321 [exp] 499 / 6e-158 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 480 / 6e-151 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10016316 [exp] 445 / 4e-139 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 437 / 7e-134 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10002736 [exp] 315 / 2e-98 AT3G14470 317 / 1e-98 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 326 / 1e-95 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.017G014900.2 pacid=42814267 polypeptide=Potri.017G014900.2.p locus=Potri.017G014900 ID=Potri.017G014900.2.v4.1 annot-version=v4.1 ATGGCTCTGGAGTTGATCGGAGGATCAATTCTCTCTGCTCTCATTGAGGTTCTGGTCGACAGGTTGGCCTCTCGTGACGTTCTGGGCTTCTTCAAAAGCC ACGAACTCGATGGTGGTCTTCTGGAAAAGCTGAATGAAACACTGAATACTGTCAACGGACTACTCGACGATGCGGAGGAGAAGCAGATTACAAAGCGTGC TGTGAAGAACTGGCTTAATGATGTTAAACATGCTGTCTATGAAGCTGAGGACATATTGGAGGAGATTGATTATGAATATCTACGATCCAAGGACATTGAT GCCCCTCGACCTGACAGCAATTGGGTAAGGAATCTGGTTCCATTTCTAAATCCAGCTAATGGAAGGATGAAAGAGATGGAAGCAGAGTTACAAAAGATCC TTGAGAAGCTTGAACGTTTACTTAAACAAAAGGGTGATCTGCGCCACATAGAAGGTACTGGTAGATGGAGACCATTGTCAGAGAAAACAACTCCACTGGT TAATGAATCTCATGTATATGGAAGGGACTCTGATAAGGAAGCCATAATGGAGTTCTTGTTGACACAACACAACACGGATGGCTCGAATTTATGTGCGGTT CCTATTGTGGGCATGGGCGGGATTGGTAAAACCACTCTTGCTCAGCTTATCTACAACGAGGAAAGGGTAGAGCAGTGCTTTCAACTCAAAGCCTGGGTCT GGGCTTCTCAACAATTTGATGTTGCCAGGATTATTAAGGATATTCTTGAAAAGATCAACGCAAGTACTTGCCGCACCAAAGAACCAGATGAATCTCTAAT GGAGGCAGTGAAAGGGAAAAAACTCCTACTTGTTCTAGATGACGCGTGGAACATCGAGTACAATGAATGGGATAAGTTACTGCTACCTTTGCGGTATGTG GAGCACGGAAGTAAGATTGTCGTGACAACACGGGAAGAAGATGTAGCAAAAGTCACGCAAACTGTCATCCCCTCTCACCGCTTGAATGTAATAAGCGATG AATATTGCTGGAAGTTGTTTGCAAGGGATGCATTTAGTGGTGTAAATTCTGGAGCAGTCTCACACTTGGAAGCATTTGGCAGAGAAATAGCGAGAAAGTG CAAAGGTTTACCGCTGGCAGCGAAAACTCTTGGGGGTCTTTTGCACTCCGTAGGAGATGTCAAGCAATGGGAGAAGATATCCAATAGCAGTATGTGGGGT TCGTCGAATGAAAACATCCCTCCAGCTCTAACATTGCGCTATTATTATCTCCCTTCACACCTGAAACGTTGTTTTGCTTACTGCGCAATATTTCCTAAGG GTTATGAATTTCATAAGGATGAATTGATCACTGAATGGATGGCACATGGTTTTCTAGTCCAGCCCAGAGGCGTTGAGGAGATGGAAGATATAGGTGAAAA ATACTTTGATGATCTTGTCTCTAGGTCACTTTTCCAGCAATCAACTCGTGAATATTCTTTTTTCAGCATGCATGACCTCATAAGTGATTTAGCTGAATAC GTGTCAGGAGAATTTTGCTTTAAGCTTGGTATTAATGAATCGGGCTCTGGGTTGGAGGGTGAACATTCATGCTCGCTTCCAGAAAGGACTCGTTATTTAT CAATCACTTCAGCGGCAGCATATGGCGGAGGACTTCGGATATTTCGTAGCATTCATGGAGTCCAACATTTGCGCGCCTTGTTTCCACTGAAGTTTTTTGT GGAAGTTGATATTGAGGCGCTGAATGACATTTTGCCAAATCTTAAGCGCTTGCGCATGCTATCTTTATGTCATCCAAAAGATATTTCTTCTCAGTTGCTC AATTCCATTGGCAACTTAAAACATTTGCATATTTCTTCTCAGTTGCTCAATTCCATTGGCAACTTAAAACATTTGCGGCACTTGGACCTTTCTTGCACCG CCATTGAAATGTTACCTAAAAGTGTGTGCACCTTGTACTATTTGCAAAGCTTATTGTTAAAGGAGTGCCGACATCTCATGGAGTTGCCATCCAACCTTTC CAACTTGGTCGACTTACAACATCTTGATATTGAAGGGACAAATTTGAAAGAGATGCCACCAAAAATGGGGAAACTCACGAAGCTTCGAATTTTGGATTCT TACATCGTGGGAAAAGATAGCGGGTCTAGCATGAAAGGGTTGGGGAAGCTCTCACATATAAGGAAAAAACTTTCTATTCGGAATCTCAGAGATGTTGCAA ATGCTCAAGATGCTTTGGATGCCAATTTGAAGGGTAAGAAGAAGATTGAGGAGTTGGGGTTGACGTGGGATGGCAGTACGGATGACACACCACACGAGAG AGATGTACTTGAGAAATTGGAGCCTTCTGAAGATGTGAAAGAGCTTGCCATTATTGGTTACGGGGGTACAACGTTTCCAGGCTGGCTTGGAAACTCTTCT TTCTCAAATATGGTAACGTTGCTTCTTTATGGATGTAAGAACTGCATCCTCTTACCACCATTGGGGCAGCTGCCATCTCTTGAAGAGCTCCATATTGAAG GATTTGATGATGTCGTCGCAGTTAGTTCTGAGTTCTATGGAAGTGACCCTTTGATTGTGAAGCCATTTAAATCCCTCAAAATATTAACGTTTGCGGGGAT GAAAAAATGGCAGGAATGGAAAACGGATGTAGATGGTGCTTTTCCTCATCTTGAAAAGCTCTTGATAGCAGGTTGTCCCGAGTTAGCAAATGCCTTGTGT TGTAACCCAATTTTGGATTCACCAAGATTTTCTTGA
AA sequence Show only first row Show all	>Potri.017G014900.2 pacid=42814267 polypeptide=Potri.017G014900.2.p locus=Potri.017G014900 ID=Potri.017G014900.2.v4.1 annot-version=v4.1 MALELIGGSILSALIEVLVDRLASRDVLGFFKSHELDGGLLEKLNETLNTVNGLLDDAEEKQITKRAVKNWLNDVKHAVYEAEDILEEIDYEYLRSKDID APRPDSNWVRNLVPFLNPANGRMKEMEAELQKILEKLERLLKQKGDLRHIEGTGRWRPLSEKTTPLVNESHVYGRDSDKEAIMEFLLTQHNTDGSNLCAV PIVGMGGIGKTTLAQLIYNEERVEQCFQLKAWVWASQQFDVARIIKDILEKINASTCRTKEPDESLMEAVKGKKLLLVLDDAWNIEYNEWDKLLLPLRYV EHGSKIVVTTREEDVAKVTQTVIPSHRLNVISDEYCWKLFARDAFSGVNSGAVSHLEAFGREIARKCKGLPLAAKTLGGLLHSVGDVKQWEKISNSSMWG SSNENIPPALTLRYYYLPSHLKRCFAYCAIFPKGYEFHKDELITEWMAHGFLVQPRGVEEMEDIGEKYFDDLVSRSLFQQSTREYSFFSMHDLISDLAEY VSGEFCFKLGINESGSGLEGEHSCSLPERTRYLSITSAAAYGGGLRIFRSIHGVQHLRALFPLKFFVEVDIEALNDILPNLKRLRMLSLCHPKDISSQLL NSIGNLKHLHISSQLLNSIGNLKHLRHLDLSCTAIEMLPKSVCTLYYLQSLLLKECRHLMELPSNLSNLVDLQHLDIEGTNLKEMPPKMGKLTKLRILDS YIVGKDSGSSMKGLGKLSHIRKKLSIRNLRDVANAQDALDANLKGKKKIEELGLTWDGSTDDTPHERDVLEKLEPSEDVKELAIIGYGGTTFPGWLGNSS FSNMVTLLLYGCKNCILLPPLGQLPSLEELHIEGFDDVVAVSSEFYGSDPLIVKPFKSLKILTFAGMKKWQEWKTDVDGAFPHLEKLLIAGCPELANALC CNPILDSPRFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.017G014900 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.003G200080 [exp]	2.23	0.9519
AT4G02550			unknown protein		Potri.015G008050 [exp]	3.46	0.9445
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121725 [exp]	4.00	0.9306
AT5G44870		TTR1, LAZ5	tolerance to Tobacco ringspot ...		Potri.006G282700 [exp]	4.24	0.9369
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145566 [exp]	6.32	0.9267
AT5G36930			Disease resistance protein (TI...		Potri.006G283600 [exp]	6.32	0.9389
AT3G14470			NB-ARC domain-containing disea...		Potri.017G127651 [exp]	7.48	0.9311
AT5G36930			Disease resistance protein (TI...		Potri.011G008740 [exp]	8.24	0.8624
AT3G12210			DNA binding (.1.2)		Potri.002G114400 [exp]	8.48	0.9130
AT5G36930			Disease resistance protein (TI...		Potri.011G009400 [exp]	8.48	0.9293

Compare expression of checked genes

Potri.017G014900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.