Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 558 / 7e-178 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 494 / 2e-150 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 202 / 3e-53 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G50180 183 / 6e-47 NB-ARC domain-containing disease resistance protein (.1) AT3G07040 181 / 5e-46 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G58390 179 / 1e-45 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G48620 176 / 9e-45 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G35450 171 / 3e-43 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 170 / 1e-42 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58848 169 / 2e-42 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G015300 [exp] 2113 / 0 AT3G14470 572 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G015600 [exp] 1865 / 0 AT3G14470 591 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G014900 [exp] 1524 / 0 AT3G14470 571 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.007G137101 [exp] 1478 / 0 AT3G14470 616 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G029300 [exp] 932 / 0 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.005G007001 [exp] 906 / 0 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126806 [exp] 874 / 0 AT3G14470 587 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200200 [exp] 852 / 0 AT3G14470 634 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200500 [exp] 845 / 0 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024173 [exp] 849 / 0 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 815 / 0 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 809 / 0 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 776 / 0 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10016316 [exp] 631 / 0 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10005321 [exp] 559 / 2e-174 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 546 / 9e-170 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 529 / 6e-162 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10022900 [exp] 318 / 5e-91 AT3G14470 350 / 2e-104 NB-ARC domain-containing disease resistance protein (.1) Lus10022792 [exp] 318 / 9e-91 AT3G14470 343 / 7e-102 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.017G015200.1 pacid=42813172 polypeptide=Potri.017G015200.1.p locus=Potri.017G015200 ID=Potri.017G015200.1.v4.1 annot-version=v4.1 ATGGCTCTGGAGTTGATCGGAGGATCAATTCTCTCTGCTCTCGTTGAGGTACTGGTCGACAGGTTGGCCTCTCGTGAGGTTCTGGACTCCTTCAAAAGCC ACAAACTCGATGATGGTCTTCTGGAAAAGCTGAATGAAACACTGAATACTGTCAACGGACTACTCGACGATGCGGAGGAGAAGCAGATTACAAAGCGTGC TGTGAAGAACTGGCTTAATGATGTTAAACACGCTGTGTATGAAGCTGAGGACATATTGGATGAGATTAATTATGAATATCTACGATCCAAGGACATTGAT ACCCCTCGACCTGACAGCAATTGGGCAAGGAATCTGGTTCCATTTCTAAATCCAGCTAATAGAAGGATGAAAGAGATTGGAGCAGAGTTACAAAAGATCT ATGAGAAGCTTGAACGTTTACTTAAACACAAGGGTGATCTGCGCCACATAGAAGGTACTGGTGGATGGAGACCATTGTCAGAGAAAACAACTCCACTGGT TAATGAACCTGATGTATATGGAAGGGACGCTGATAAGGAAGCCATAATGGAGCACTTGCTGACACAACACAAGACAGATGGCCCAAATTTAGTTGTGGTT CCTATTGTGGGCATGGGCGGGATTGGTAAAACCACTCTTGCTCAGCTTATCTACAACGACGAAAAGGTAGATCAGTTCTTCCAACTCAAGGCCTGGGTCT GGGCTTCTCAACAATTTGACGTCACCAGGATTATTGAGGATATTATTAAGAAGATCAAAGCAAGGACTTGCCCCACCAAAGAACCAGATGAATCCAAAGA ACCAAATGAATCTCTAATGGAGGCAGTGAAAGGGAAAAAACTTCTACTTGTTCTAGATGACGCGTGGAACATCGAGTACAATGAATGGGATAAATTACTG CTACCTTTGCGGTATGTGGAGCACGGAAGTAAGATTGTCGTGACAACACGGGAAGAAGATGTAGCAAAAGTCACGCAGACTGTCATCCCCTCTCACCGCT TGAATGTAATAAGCGATGAAGATTGCTGGAAGTTGTTTGCAAGGGATGCATTTAGTGGTGTAAATTCTGGAGCAGTCTCACACTTGGAAGAATTTGGCAG AGTAATAGTGAGAAAGTGCAAAGGTTTACCGCTGGCAGCGAAAACTCTTGGGGGTCTTTTGCACTCCGTAGGAGATGTCAAGCAATGGGAGAAGATATCC AATAGCAGTATGTGGGGTTCGTCGAATGAAAACATCCCTCCAGCTCTAACATTGAGCTATTATTATCTCCCTTCACACCTGAAACGTTGTTTTGCTTATT GTGCAATATTTCCCAAGGATTATGTATTCAAGAAGGATAGATTAATCACTGAATGGATGGCACATGGTTTTCTAGTCCAGCCCAGAGGCGTTGAGGAGAT GGAAGATATAGGTGAAAAATACTTTAATGATCTTGTCTCCAGGTCACTTTTCCAGCAATCCACTGGTGATTCTTTTTTCAGCATGCATGACCTCATAAGT GATTTAGCTGAATACGTGTCAGGAGAATTTTGCTTCAAGCTTGGTATTAATGAATCGGGCTCTGGGTTGGAGAGTGAACATTCATGCTCGCTTCCAGAAA GGACTCGTTATTTATCAATCACTTCAGCGGCAGCATATGGCGGAGGACTTCGGATTTTTCGTAGCATTCATGGAGTCCAACATTTGCGCGCCTTGTTTCC ACTGAAGTTTTTTGTGGAAGTTGATATTGAGGCACTGAATGACATTTTGCCAAATCTTAAGCGCTTGCGAATGCTATCTTTATGTCATCCAAAAGATATT TCTTCTCAGTTGCTCAATTCCATTGGCAACTTAAAACATTTGCGGCACTTGGACCTTTCTCAGACAGTATTTAAACGGTTGCCCGAAAGTGTGTGCACCT TGTACTATTTGCAAAGCTTATTGTTAAAGGAGTGCCGACTTCTCATGGAGTTGCCATCCAACCTTTCCAACTTGGTCGACTTACAACATCTTGATATTGA AGGGACAAATTTGAAAGAGATGCCACCAAAAATGGGGAAACTCACGAAGCTTCGAATTTTGGAATCTTACATCGTGGGAAAAGATAGCGGGTCTAGCATG AAAGAGTTGGGGAAGCTCTCACACATAAGGAAAAAACTTTCTATTCGGAATCTCAGAGATGTTGCAAATGCTCAAGATGCTTTGGATGCCAATTTGAAGG GTAAGAAGAAGATTGAGGAGTTGGGGTTGACGTGGGATGGCAGTACGGATGACACACCACACGAGAGAGATGTACTTGAGAAATTGGAGCCTTCTGAAGA TGTGAAAGAGCTTGCCATTATTGGTTACGGGGGTACAACGTTTCCAGGCTGGCTTGGAAACTCTTCTTTCTCAAATATGGTAACGTTGCTTCTTTCTGGA TGTACGAACTGCATCCTCTTACCACCATTGGGGCAGCTGCCATCTCTAGAAGAGCTCGAAATTGAAGGATTTGATGAAGTCGTGGCAGTTGGTTCTGAGT TCTATGGAAGTGACCCTCCAATGGAGAAGCCATTTAAATCCCTCATAACATTAAAGTTTGAGGGGATGAAGAAATGGCAGGAATGGAATACAGATGTAGC TGGTGCTTTCCCTCATCTTGAAAATCTCTTGATAGCAGGTTGTCCAGAGTTAACAAATGGCTTGCCTAATCACCTTCCTTCTTTATTGATACTTGAGATT CGAGCGTGTCCGCAGCTTGTGGTTTCAATTCCAGAGGCTCCCCTGCTCAGAGAAATCAATGTATCTGAGGGAGATGAAAGTCGTATAACTGGTCGTACGT CGTCCTATTATTGCTACTACTTACCAGATCAACCACCCAAGTGCCTTCATTTTAGACGAGATCCCCAGCTAACGGGAATGGAGCAAATGAGTCATTTGGA TCCCCGTCTTTTCACTGATATCAAAATCGAGGAATGTAGTTCATTTAAGTGCTGCCAGCTAGACCTTTTACCCCAGGTCACCACACTTACCATTGAACAT TGTCTCAATCTGGAATCCCTATGTATAGGCGAGAGACCTGTCCCTGCTCTCTGTCGTCTGACAATCAGTCACTGTCCTAATTTGGTGTCTTTCCCCAAAG GAGGACTAGCTGCCCCGGATTTGACAAGCCTTGTGTTAGAGGGTTGCTTATATTTGAAGTCGTTGCCGGAAAACATGCGTTCCCTCCTACCTTCCCTACA GGATTTGCAATTGATCTCACTTCCAGAAGTTGATTCGTTTCCTGAAGGAGGTTTACCCTCCAATTTAAACACACTTTGCATTGAAGATTGTATCAAACTC AAGGTATGTGGTTTGCAAGCACTCTCTTCTCTTTCATACTTCGAATTTAGTGGGAACGATGTGGAGTCTTTTGACGAGGAGACGTTGCCCTCTACTCTCA CAACCCTTAAAATCAAACGTCTGGGAAACCTGAAGTCTCTGGACTATAAGGGGCTTCATCACCTCACCTCTCTTCAGGGATTGGGTATCGAGGGTTGCCC TAAGCTTGAGTCCATATCAGAGCAGGCGCTTCCCTCCTCCCTTGAATACCTTTATCTCAGAAATCTAGAATCTCTGGACTACGTGGGGCTTCATCACCTC ACCTCTCTTGACACATTGAAGATCAAGAGTTGCCCTAAACTTGAGTTCGTATCAGAACAGGTGCTGCCCTCCTCCCTTGAATACCAGGGGCTTCATCACC TCACCTCTCTTAGAAATTTGAGTATCGAGAGTTACCCTAAACTTGAGCACATATCAGAACAGGGGCTGCCCTCCTCCCTTGAATGCCTTCATCTCTGTAA ACTGGAATCTTTGGACTACATTGGGCTTCAGCACCTCACCTCTCTTCACAAAATGAAGATCGGGAGTTGTCCTAAACTTGAATCGTTGCAGGGGCTGCCT TCCTCCCTTGAATTCCTTCAGTTATGGGATCAGCAAGACCGGGACTATAAGGAACTTCGGCACCTCACCTCTCTTCGCAAAATGAATATAAGAAGGAGCC TTAAGCTTGAGTACCTTCAAGAAGGCACACTTCCCTCCTCCCTTAAAGACCTTGAAATCCAGGATTTGGAAGATCTGGATTATAAGGGGTTTCGGCACCT CAGCTCTCTTCGTAAATTACATATCTGTAATTCTCCTAAGCTCGAGTTCGTGCCAGGAGAGGAGCTGCCCTCCTCCCTTGTATCTCTTAAAATATCAGGT CTGATAAATCTGAAATCTGTAATGAGGCTTCAGCACCTCACCTCTCTTCGCAAATTGATTATCCGGGATTGTCCTAAGCTTGAGTACTTGCCAACAGAAG AGCTGTCCTTACCCCTAGTTCCTGATATTAGTGGTTGTCCTTTTGTAGAACCGAGTTGTTGCATTAGTTAG
AA sequence Show only first row Show all	>Potri.017G015200.1 pacid=42813172 polypeptide=Potri.017G015200.1.p locus=Potri.017G015200 ID=Potri.017G015200.1.v4.1 annot-version=v4.1 MALELIGGSILSALVEVLVDRLASREVLDSFKSHKLDDGLLEKLNETLNTVNGLLDDAEEKQITKRAVKNWLNDVKHAVYEAEDILDEINYEYLRSKDID TPRPDSNWARNLVPFLNPANRRMKEIGAELQKIYEKLERLLKHKGDLRHIEGTGGWRPLSEKTTPLVNEPDVYGRDADKEAIMEHLLTQHKTDGPNLVVV PIVGMGGIGKTTLAQLIYNDEKVDQFFQLKAWVWASQQFDVTRIIEDIIKKIKARTCPTKEPDESKEPNESLMEAVKGKKLLLVLDDAWNIEYNEWDKLL LPLRYVEHGSKIVVTTREEDVAKVTQTVIPSHRLNVISDEDCWKLFARDAFSGVNSGAVSHLEEFGRVIVRKCKGLPLAAKTLGGLLHSVGDVKQWEKIS NSSMWGSSNENIPPALTLSYYYLPSHLKRCFAYCAIFPKDYVFKKDRLITEWMAHGFLVQPRGVEEMEDIGEKYFNDLVSRSLFQQSTGDSFFSMHDLIS DLAEYVSGEFCFKLGINESGSGLESEHSCSLPERTRYLSITSAAAYGGGLRIFRSIHGVQHLRALFPLKFFVEVDIEALNDILPNLKRLRMLSLCHPKDI SSQLLNSIGNLKHLRHLDLSQTVFKRLPESVCTLYYLQSLLLKECRLLMELPSNLSNLVDLQHLDIEGTNLKEMPPKMGKLTKLRILESYIVGKDSGSSM KELGKLSHIRKKLSIRNLRDVANAQDALDANLKGKKKIEELGLTWDGSTDDTPHERDVLEKLEPSEDVKELAIIGYGGTTFPGWLGNSSFSNMVTLLLSG CTNCILLPPLGQLPSLEELEIEGFDEVVAVGSEFYGSDPPMEKPFKSLITLKFEGMKKWQEWNTDVAGAFPHLENLLIAGCPELTNGLPNHLPSLLILEI RACPQLVVSIPEAPLLREINVSEGDESRITGRTSSYYCYYLPDQPPKCLHFRRDPQLTGMEQMSHLDPRLFTDIKIEECSSFKCCQLDLLPQVTTLTIEH CLNLESLCIGERPVPALCRLTISHCPNLVSFPKGGLAAPDLTSLVLEGCLYLKSLPENMRSLLPSLQDLQLISLPEVDSFPEGGLPSNLNTLCIEDCIKL KVCGLQALSSLSYFEFSGNDVESFDEETLPSTLTTLKIKRLGNLKSLDYKGLHHLTSLQGLGIEGCPKLESISEQALPSSLEYLYLRNLESLDYVGLHHL TSLDTLKIKSCPKLEFVSEQVLPSSLEYQGLHHLTSLRNLSIESYPKLEHISEQGLPSSLECLHLCKLESLDYIGLQHLTSLHKMKIGSCPKLESLQGLP SSLEFLQLWDQQDRDYKELRHLTSLRKMNIRRSLKLEYLQEGTLPSSLKDLEIQDLEDLDYKGFRHLSSLRKLHICNSPKLEFVPGEELPSSLVSLKISG LINLKSVMRLQHLTSLRKLIIRDCPKLEYLPTEELSLPLVPDISGCPFVEPSCCIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.017G015200 [exp]	0	1
AT5G02810		APRR7, PRR7	pseudo-response regulator 7 (....		Potri.008G046200 [exp]	7.48	0.7117
AT3G14460			LRR and NB-ARC domains-contain...		Potri.017G015000 [exp]	11.61	0.8149
AT5G36930			Disease resistance protein (TI...		Potri.019G021024 [exp]	18.11	0.8086
AT5G47840		AMK2	adenosine monophosphate kinase...		Potri.019G078200 [exp]	20.29	0.6442
AT3G42170			BED zinc finger ;hAT family di...		Potri.016G026066 [exp]	20.97	0.7802
AT3G14470			NB-ARC domain-containing disea...		Potri.017G014900 [exp]	25.63	0.8055
AT3G14470			NB-ARC domain-containing disea...		Potri.017G127651 [exp]	30.88	0.7963
AT3G14470			NB-ARC domain-containing disea...		Potri.017G015600 [exp]	32.40	0.7152
AT3G14470			NB-ARC domain-containing disea...		Potri.003G200080 [exp]	33.91	0.7994
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.006G061300 [exp]	39.08	0.6494

Compare expression of checked genes

Potri.017G015200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.