Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20570 259 / 2e-82 GARP ATGLK1, GLK1, GPRI1 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) AT5G44190 227 / 3e-70 GARP ATGLK2, GPRI2, GLK2 GBF'S PRO-RICH REGION-INTERACTING FACTOR 2, GOLDEN2-like 2 (.1) AT4G18020 121 / 9e-30 GARP APRR2 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) AT5G58080 80 / 8e-16 GARP ARR18 response regulator 18 (.1) AT5G59570 77 / 2e-15 GARP BOA BROTHER OF LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1) AT5G05090 76 / 3e-15 GARP Homeodomain-like superfamily protein (.1) AT3G10760 76 / 4e-15 GARP Homeodomain-like superfamily protein (.1) AT2G01760 76 / 5e-15 GARP ARR14 response regulator 14 (.1) AT4G16110 77 / 6e-15 GARP ARR2 response regulator 2 (.1) AT3G16857 77 / 1e-14 GARP ARR1 response regulator 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G136901 [exp] 538 / 0 AT2G20570 256 / 5e-81 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Potri.001G146200 [exp] 130 / 4e-33 AT4G18020 447 / 2e-152 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Potri.003G087700 [exp] 116 / 6e-28 AT4G18020 389 / 1e-129 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Potri.018G021300 [exp] 81 / 3e-16 AT2G25180 364 / 2e-117 response regulator 12 (.1) Potri.006G262100 [exp] 81 / 5e-16 AT2G25180 381 / 6e-124 response regulator 12 (.1) Potri.018G111300 [exp] 80 / 7e-16 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.010G105600 [exp] 79 / 2e-15 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.008G213500 [exp] 78 / 4e-15 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.006G188000 [exp] 78 / 4e-15 AT2G25180 386 / 8e-126 response regulator 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039883 [exp] 251 / 1e-78 AT2G20570 241 / 7e-75 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Lus10018649 [exp] 238 / 1e-73 AT2G20570 222 / 6e-68 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Lus10033642 [exp] 223 / 1e-68 AT2G20570 224 / 6e-69 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Lus10003013 [exp] 111 / 3e-26 AT4G18020 376 / 6e-125 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10011044 [exp] 102 / 3e-23 AT4G18020 366 / 3e-121 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10040109 [exp] 100 / 2e-22 AT4G18020 371 / 8e-123 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10030938 [exp] 93 / 5e-20 AT4G18020 377 / 2e-124 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10005340 [exp] 79 / 2e-15 AT2G25180 414 / 3e-137 response regulator 12 (.1) Lus10041020 [exp] 79 / 2e-15 AT2G25180 412 / 3e-136 response regulator 12 (.1) Lus10037719 [exp] 78 / 3e-15 AT3G16857 613 / 0.0 response regulator 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.017G015800.2 pacid=42812871 polypeptide=Potri.017G015800.2.p locus=Potri.017G015800 ID=Potri.017G015800.2.v4.1 annot-version=v4.1 ATGCTAGCTGTGTCACCCTTCAGAAACACTGCAACCACCAAGAATGAGAGCCAAGAACAGATGGAGAGTTATTCTACTATTGTCAATGGAGAGTTCCCGG ACTTCTGCGATGGGGACTTGCTCGAAAGCATCGATTTCGATGATCTTTTTGTCAGTATTAATGAAAAGGATGTTTTGCCAAATTTGGAGATGGATCCCGA AATCCTTGCTGAATTCTCAGTTAGTGGTAGCGGGGGCGAGGAATCGGATGTGAACACATCTATGTCGAATGAGAAAGTGGAGGATAATAGTATTCGAAGG AAAGATGAGGAAGATAAGTTTTCAGGTTCAGGTTTGGACTCGAGTTTGAGTAGTAGAGGAGAGGAGATTGTGAGTAAGAAAGACGAGTCCGTGGTTGTTA ATCCGGTGCCCAGCGAAGATGGTGAAAAGGGAAGAAAGCCAACAACACAAGGGAAGAACAACAATAATCAAAGGAAGAGGAAAATGAAGGTGGATTGGAC ACCAGAGCTGCACAGGAGGTTCGTGCAAGCAGTGGAGCAGCTAGGGGTGGATAAGGCAGTGCCTTCGAGGATTTTAGAACTTATGGGAATTGACTGTCTC ACTCGCCATAATATTGCTAGCCATCTTCAAAAATATCGATCGCACCAGAAACATTTGCTAGCGCGTGAGGCCGAGGCAGCAAGCTGGAGTCAAAGACGGC AAATGTATGGAACCGCTGCCGCGTCTGGTGGAGGTGGAAAGACGGACATAAGTGCATGGCATGCACCCACCATGGGGTTCCCTCCTATAATCCCCATGCA CCACCACTTTAGACCATTACATGTATGGGGACATCCCTCCATGGACCAGTCCCTAATGCATATGTGGCCTAAACATCTAGCTCATTCTCCTTATTCACCG CTGCCGCCGCCACCTACATGGCACCAACCAGACCCTTCATATTGGCACCACCACGCCCACCAAAGGGGTCCAAATGTACTAAACCCAGGGACACCATGCT ATCCACAGCCACCAGCAACTAGATTTCATGCACCTCCTGTCCCAGGAATCCCACCCCATGCCATGTACAAAGTAGATCCCGGCACTGGCGTCCCAGCCAG ACACAATTCAGGCCCCGACCCTTTCTTAGACCTTCATCCGACAAAAGAGAGTGTCGATGCAGCTATTGGTGATGTTTTATCGAAGCCATGGCTGCCACTC CCTCTTGGACTGAAACCTCCAGCTACTGATAGTGTTCTAGTGGAGCTGCAAAAGCAAGGAGTTCCAAAGATACCACCAACGTGA
AA sequence Show only first row Show all	>Potri.017G015800.2 pacid=42812871 polypeptide=Potri.017G015800.2.p locus=Potri.017G015800 ID=Potri.017G015800.2.v4.1 annot-version=v4.1 MLAVSPFRNTATTKNESQEQMESYSTIVNGEFPDFCDGDLLESIDFDDLFVSINEKDVLPNLEMDPEILAEFSVSGSGGEESDVNTSMSNEKVEDNSIRR KDEEDKFSGSGLDSSLSSRGEEIVSKKDESVVVNPVPSEDGEKGRKPTTQGKNNNNQRKRKMKVDWTPELHRRFVQAVEQLGVDKAVPSRILELMGIDCL TRHNIASHLQKYRSHQKHLLAREAEAASWSQRRQMYGTAAASGGGGKTDISAWHAPTMGFPPIIPMHHHFRPLHVWGHPSMDQSLMHMWPKHLAHSPYSP LPPPPTWHQPDPSYWHHHAHQRGPNVLNPGTPCYPQPPATRFHAPPVPGIPPHAMYKVDPGTGVPARHNSGPDPFLDLHPTKESVDAAIGDVLSKPWLPL PLGLKPPATDSVLVELQKQGVPKIPPT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20570	GARP	ATGLK1, GLK1, G...	ARABIDOPSIS GOLDEN2-LIKE 1, GB...		Potri.017G015800 [exp]	0	1
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Potri.006G107700 [exp]	1.00	0.9082
AT3G21300			RNA methyltransferase family p...		Potri.001G195300 [exp]	7.74	0.8786
AT5G66090			unknown protein		Potri.005G109100 [exp]	9.00	0.8912
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Potri.010G080700 [exp]	15.87	0.8083
AT4G32915			unknown protein		Potri.018G058200 [exp]	16.24	0.8701
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.017G052300 [exp]	19.64	0.8970
AT4G34880			Amidase family protein (.1)		Potri.004G169300 [exp]	20.78	0.8893
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Potri.005G179600 [exp]	22.44	0.8467
					Potri.010G081351 [exp]	36.66	0.8426
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Potri.019G118600 [exp]	39.19	0.8388

Compare expression of checked genes

Potri.017G015800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.