Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01570 216 / 5e-61 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G14920 209 / 4e-59 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT3G03450 187 / 4e-51 GRAS RGL2 RGA-like 2 (.1) AT5G17490 176 / 2e-47 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G66350 174 / 6e-47 GRAS RGL1 RGA-like 1 (.1) AT2G43500 139 / 7e-34 NLP8 Plant regulator RWP-RK family protein (.1.2) AT3G59580 135 / 2e-32 NLP9 Plant regulator RWP-RK family protein (.1.2) AT1G76350 122 / 2e-28 NLP5 Plant regulator RWP-RK family protein (.1) AT1G20640 114 / 5e-26 NLP4 Plant regulator RWP-RK family protein (.1.2) AT5G41920 103 / 2e-23 GRAS GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G018801 [exp] 548 / 0 AT2G01570 218 / 3e-60 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.007G133000 [exp] 319 / 6e-102 AT2G01570 216 / 2e-64 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.016G027800 [exp] 301 / 9e-95 AT1G14920 244 / 1e-75 RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) Potri.004G070500 [exp] 257 / 5e-75 AT1G14920 191 / 7e-53 RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) Potri.017G148266 [exp] 230 / 3e-65 AT2G01570 196 / 4e-54 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 218 / 1e-61 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 211 / 2e-59 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 207 / 5e-58 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 207 / 8e-58 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033583 [exp] 202 / 5e-56 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10017626 [exp] 194 / 3e-53 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10008143 [exp] 145 / 1e-35 AT3G59580 769 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10017758 [exp] 141 / 3e-35 AT2G01570 454 / 4e-155 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10019368 [exp] 133 / 8e-32 AT2G43500 764 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10009133 [exp] 118 / 3e-30 AT1G14920 286 / 3e-95 RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) Lus10016596 [exp] 105 / 3e-23 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10028511 [exp] 103 / 9e-23 AT5G17490 527 / 0.0 RGA-like protein 3 (.1) Lus10016018 [exp] 103 / 2e-22 AT1G76350 775 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10012257 [exp] 103 / 3e-22 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF02892 [poplar] [flax] zf-BED BED zinc finger CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.017G018600.1 pacid=42814462 polypeptide=Potri.017G018600.1.p locus=Potri.017G018600 ID=Potri.017G018600.1.v4.1 annot-version=v4.1 ATGGCTACTCCTGGTTTCAACAAATTGTTGGATTGTGCCAAGGCAATTGAAGTTGGGGACCTGCATCTTGCTGATTCACTCATCAAGGATATCCTGACGG ACAATGATGACAAACTTGTCAAATACTGTGCTGAAGCTCTAGTTCGACGAGTCTATAAACTGTATCCTCGAAATCCCAGACCTTTAGTGCCTTCCTGCAC TGATTTGAGATGCAACATGGATTACCAGTTTTTTCCTTTCTTCTGGTTTTCAGAATTGACAACCCGTAACACCATCGTGGATGCCTTAACCGGAAAGAAA AGAGTCCAAGTTATTGACTTTTCATTGATGGCTAACGGCCGGCGGTGGTGCCTTTTGCTTGATGATTACCTAAAGCAGTCAAGTGATGCTATATCGTTCC ATTTAACTAGTATCGGACCAATTCTGTCCAAAAAAGGTGACTATCTCAATGAGATACTTGAGAAACTCCCCAAAGAAGCTAAAAAGCTTCCTATTGAGTT TGAGGTTAAGCATATGGTGGCTAGTAGCCCAGCTGAAATGGTTGAAGCTGCTCTCAAACTCGAAAGATCAAGTGAGGATGAGACGATTGTTGTCAGATGG GAGTTTGAACTCCACAAATTGCTTGCACTGCCAGGTGCAATTGAGACAGTGTTGTCTAAATTGAAAGAACTCAAACCAGAGATCATGATAGTTGTCGAAC AAGAAGCCAGCCTTAATGGTCAGGATTTCTTGGAATGTTTCACCAAGTCATTTCGCTATCACTCTATTATTTTTGACTCGCTTGGCAAGGACAATTTCGA ACACGGCAACCATAGCAAAGTGTTGTGGGAGATGTACTTTAGGCGGCAGATTAGTAACTTGGTGGCACAAGAAGGCACTGACCAGATTGTACGACATCAG ACATTTGCTGAGTGGCGAGACAGATTCTGTCGTTCTGGGTTTCGTCATGTTCGCTTACAGAACCAGTTTAAGGGAACTTTCTTTGGTCACTTGCCTGAAT ACCACATAGAAGAAATGAATCGCCATCCTGTGCTATACAGGCATGACGACCAATTGCTGTTCACCTCAGCTTGGAAATCTTATCCAACTCAGCTCAATAG CGAGTCATTGGACAACTGGAATCAGGAATCTGCAATGGGAGATGGAAACATAATGCAAATTGAAAGTTCGAGCCTTCTAATTTTGTCAGGGACGGTGAGC TCTTCTGCGTTTCTTGAAGACCAACCTGATGATGAACACATAATAATGGAAGGAAAAGTCTGGTCTCCGGAGTGTATCTCAATTAATCAAGTTGCTGCTT CTGCTAAGATATTTGACATGCTGGAATACATATGTCATGTAAATTATCTGCCCCTGGCTCTCACATGGATGTCAGATAGACGTATTCTTCGCTTGGAGAA GAGTGCTTGCTATCTGAATGACTCGACAATGGTCGAATTTATGGAGGCCTGTGGAGAACACCATCTTGAGGAAGGGAAAGGTGTAGCTGGAAAAGCACTT CAATCAAATAGCATGTACTTTGTCTCTGACATCTCTAAGCTTGATGTGAAAGATTATCCATTTATTTTCGAAGCATGGGATTTTGGTCTTCGTGGTGTTG TTGCAATCAAGCTAGAAAGCGTCTACGTGAGCAGCATTGATTACGTAGTAGAATTTTTTCTCCCTCTTGAAATGAAAGGAATTTCAGGGCAACGTCTTTT GATAAATGAAATCACAAATATCTTGCAAAAGAACTCCAGGAATTCATGGAAAGTCTGCACTCAGGAATTAAATGGTTTTAATATTAGCTCTGAAGTTGAA GTCACGATGGAGGAGGTTGGAACGAGTAACATCAGACCAGCAGCTATTTCGGACAGCCCACCGCTAGCATTATCAGAAATTGGTAGTCTGAATTCAAGTC AAATCAGGGAACTATGCAATATTTTTATGCCGACAGGTGATGGAGTGGAAGTGCCAGAGGCTCATGATCAGGAATTTGAGGAACAAAATTCCGTATTTGG ACCTCAAGCTTATCAGTTCCCAGACAGTGATGAGCTGGTAGGCATGGACAGTTCTCATATCAATACAAGCAGAACTAGCAAACGGCGACGTACATCTGAG GTGTGGCAATACTTTGACGAGGTTAGAGAAGATGGAGAAGTATGGGCTAAATGCAGAAGTTGTAGCACTAAATATCGAGGGGAAAGCACAAGGGGAACTA CAAATCTGCGCAAACACCTAAGATCATGTCCAGGGAAGAAATAA
AA sequence Show only first row Show all	>Potri.017G018600.1 pacid=42814462 polypeptide=Potri.017G018600.1.p locus=Potri.017G018600 ID=Potri.017G018600.1.v4.1 annot-version=v4.1 MATPGFNKLLDCAKAIEVGDLHLADSLIKDILTDNDDKLVKYCAEALVRRVYKLYPRNPRPLVPSCTDLRCNMDYQFFPFFWFSELTTRNTIVDALTGKK RVQVIDFSLMANGRRWCLLLDDYLKQSSDAISFHLTSIGPILSKKGDYLNEILEKLPKEAKKLPIEFEVKHMVASSPAEMVEAALKLERSSEDETIVVRW EFELHKLLALPGAIETVLSKLKELKPEIMIVVEQEASLNGQDFLECFTKSFRYHSIIFDSLGKDNFEHGNHSKVLWEMYFRRQISNLVAQEGTDQIVRHQ TFAEWRDRFCRSGFRHVRLQNQFKGTFFGHLPEYHIEEMNRHPVLYRHDDQLLFTSAWKSYPTQLNSESLDNWNQESAMGDGNIMQIESSSLLILSGTVS SSAFLEDQPDDEHIIMEGKVWSPECISINQVAASAKIFDMLEYICHVNYLPLALTWMSDRRILRLEKSACYLNDSTMVEFMEACGEHHLEEGKGVAGKAL QSNSMYFVSDISKLDVKDYPFIFEAWDFGLRGVVAIKLESVYVSSIDYVVEFFLPLEMKGISGQRLLINEITNILQKNSRNSWKVCTQELNGFNISSEVE VTMEEVGTSNIRPAAISDSPPLALSEIGSLNSSQIRELCNIFMPTGDGVEVPEAHDQEFEEQNSVFGPQAYQFPDSDELVGMDSSHINTSRTSKRRRTSE VWQYFDEVREDGEVWAKCRSCSTKYRGESTRGTTNLRKHLRSCPGKK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.017G018600 [exp]	0	1
AT5G05840			Protein of unknown function (D...		Potri.008G062500 [exp]	3.46	0.8026
AT2G25660		EMB2410	embryo defective 2410 (.1)		Potri.018G034700 [exp]	4.89	0.7855
					Potri.001G019700 [exp]	11.74	0.7125
AT2G26695			Ran BP2/NZF zinc finger-like s...		Potri.018G066900 [exp]	12.48	0.7855
AT4G03620			myosin heavy chain-related (.1...		Potri.011G091700 [exp]	14.49	0.7682
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G175700 [exp]	14.49	0.7430	PtrPDR12
					Potri.005G201350 [exp]	15.49	0.7778
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Potri.016G135400 [exp]	17.14	0.7668	Pt-LTP1.2
AT1G75800			Pathogenesis-related thaumatin...		Potri.004G014351 [exp]	18.38	0.7405
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G120700 [exp]	24.18	0.7434

Compare expression of checked genes

Potri.017G018600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.