Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01570 217 / 3e-60 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G14920 215 / 4e-60 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT1G66350 192 / 2e-52 GRAS RGL1 RGA-like 1 (.1) AT3G03450 192 / 8e-52 GRAS RGL2 RGA-like 2 (.1) AT5G17490 184 / 2e-49 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT3G59580 129 / 3e-30 NLP9 Plant regulator RWP-RK family protein (.1.2) AT1G21450 124 / 4e-29 GRAS SCL1 SCARECROW-like 1 (.1) AT2G43500 125 / 7e-29 NLP8 Plant regulator RWP-RK family protein (.1.2) AT5G48150 114 / 3e-26 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G50600 111 / 5e-25 GRAS SCL5 scarecrow-like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G018600 [exp] 558 / 0 AT2G01570 215 / 6e-61 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G019466 [exp] 352 / 2e-105 AT3G42170 279 / 6e-82 BED zinc finger ;hAT family dimerisation domain (.1) Potri.007G133000 [exp] 329 / 7e-103 AT2G01570 216 / 2e-64 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.016G027800 [exp] 309 / 5e-95 AT1G14920 244 / 1e-75 RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) Potri.004G070500 [exp] 270 / 2e-77 AT1G14920 191 / 7e-53 RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 233 / 1e-65 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 223 / 5e-62 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 217 / 8e-60 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G148266 [exp] 216 / 6e-59 AT2G01570 196 / 4e-54 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033583 [exp] 205 / 5e-56 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10017626 [exp] 202 / 4e-55 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10017758 [exp] 147 / 7e-37 AT2G01570 454 / 4e-155 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10008143 [exp] 144 / 9e-35 AT3G59580 769 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10019368 [exp] 138 / 7e-33 AT2G43500 764 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10016596 [exp] 125 / 9e-30 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10042776 [exp] 124 / 3e-29 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10029747 [exp] 123 / 6e-29 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10029592 [exp] 119 / 2e-27 AT1G63100 669 / 0.0 GRAS family transcription factor (.1) Lus10009133 [exp] 110 / 2e-27 AT1G14920 286 / 3e-95 RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF02902 [poplar] [flax] Peptidase_C48 Ulp1 protease family, C-terminal catalytic domain CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.017G018801.1 pacid=42814169 polypeptide=Potri.017G018801.1.p locus=Potri.017G018801 ID=Potri.017G018801.1.v4.1 annot-version=v4.1 ATGGCCCCTCCCCTTCTTGAAAAATTGATGGAATGCGCCAAGGCAATTGAAGATGGTGATCTGAAACATGCAGATTCACTCTTCAAGGAAATCGGACTCG AAAGTTCCACTGAAGCCAATTTAGCCACAAGAAAAGTTGTCAAATACTTCGCTGAAGCTCTTGTTCGGCGACTGTATAAACTGTATCCTCGAAATCCTAT GCCGTTAGTACGTTTCAGAGAAGATATGGACATCCTCGGTTGCAAATTCGAACCTTTCCTCTCGTTTGCTAGCTACACCATCATGCCTCCCTTCTATGAT GCACTGCGTGGAAAAAAACAAGTTCACATTATTGACTTTTCCGTTGCGGTGGATATCTGGCAGCATGCTACTCTGATGAAAGTGCTTGCAAGCGAACTTG GTAGCCGATTGTCATACCGGATAACTTTCGTCGGGCCAAAATTATCAAAACATCTTGGGTACCTCAAGTTAATTAGTTTGATCCTCACTAAAACGGCTGA AAACCATCAAATTGATTTCGAGTATGGAGAATATCTTGCTAATAGTGTGGATGAGATAGTTGGAGCTACTCTACAACTCGGCAGAAGAAACAAGGAAGAG GCGGTGGTAGTGGAATGGGAATTTGAACTACACAAATTGCTTGCAGTACCCAGTGATAAATTCAATCTGGTGATGTCAAGATTGAAGGACCTCAAACCAG AGGTCATGGTAATTGTCGAGCAGGAAGCGGATCATAACAGTCCAGATTTGATGGACCGCCTCGGCAAATCATTCAAGTATTACTCTGTTATGTTTGACTC CCTCGAGGAGGATAAATTTGAAAAGCTTGAAGATTATAGAGTTCTATGGGAGAGGAATTTTAGGCGCCAGATTAGCAAAGTGGTGGCTGAAGAGGGCATC GGCTATGTTGAGCGACATGAGACATGGGCTCAGTGGCGAGCCAGACTGTTTCGAGCTGGTTTTCATCCTGCTCGCATAATGTTCCGTGAAACTATGCTTT TTAATAACAAGACTAATCAATACAGAATAGAAGAAAAGAATCGGCGTCCCCTGCTCTGCCGGCTCGATTACCCTTTCGCTATCTCTTCGGCTTGGAAACC TGACCTAACTCACGATGAGTCAATAAGCATGGAGATAGGTGACCTAGGATCTATGCTGGGCAGTTTTAACATGGCACAAGATGCAAGTCGGGAGTCCGGG AAAGCAAGCAAGTCTGTATCCCATGAAGACGACGCAGATGATGCTACTATCATGATGAGAGGAAGTATTTGGTCGACAGAGTGCTTCTCAATTAACCAGA TCGCTGCTTCAGCTGAGTTATTTGACATATTAGAATATGTATGTCATGTACATGATCTGCCGATGGCTCTAACATGGATTTCAGACAGGAGAGAGGATGG TACAAATTCAAGAGAGAAATTTAGGCTGCACATCGTGGATACTGCTTGCTTTGTTAATGATGTAGGAATGAAAGGTTTCGTTGAGGCATGTGTTGAAGGA CCTCCTCTTGAGGAAGGGCAAGGGATAGCTGGAAAAGCACTTCAATCAAAGATGCAATTTGTCCCTGAAGTTGCAGACCTTGATGCAATCGATTATCCAT TTCTTCATGTTGCATGGGAGTTTGGCCTTCATGCTGTTCTTGCAATTAAGCTTGCAAGCACCTACATGAGTAGTGTTGATTATATATTAGAACTTGTTTT CCCTCTGGAAACTAGAGAACTTTCAGAACAGTTGGTATTGATGAAGGAAATCATATCAACCTTGACCAAAAATTGTGGGAATGCATGGAGACTTTGGGGT AATAGAGCTGGGATTGAGAAGGCAGGGAAGTCTGGTGAAACAGCAGCTATTGTTTCTGGCAGCTCTCCACAGGGGTTTTCAGATACTGGCGGTCTGAATA CAGAAGATATAACCATTACATTGGATAGCTGTTTGAGTGATGGGCATGGTGAGCAGGAAGTCGAAGGACAAACTAGAGGTATTGGGGAACAAGCTCGCAC TACTGGCATCACATTGCCCAAAAGTCCCCATATACCTCGTCCAATAAAACCTCCAAGTTCCTATAAATTGAGATCCAAGGTGTGGATAGACTTCTATAAG TTGAGAGATGAGAATGGTGCAGAATGGGCCATCTGTAAACATTGTAAGAAGAGGTATCGAGGTGAAAGCACAAGGGGAACTGCAAATCTACTTAAACACT TGAGAAATTGTCAGAAAAAGAGAGAAGCAGAACAGCGAACACCTAAAGATCAGCCTGTTCCATTTATGGTGATCGAAGCGGACAGCCTAGAGCATTTTGA GTTAATCGACAACATATTTTCACCTTCATTGGACGAGACTATAGATCGCTTAATGTCTAGTTCAAGAAAGCAACAGGGAAATTCAGAACATCAAATGCCT AGACACCAGGCAGGTCCATTTAAGGTGATCAAATCTACGAGTCCAGAGGATTTAAAGTTAATCAACTACATTTTTTACTCATCTTTGGATGAGAGTGAGA TTGTTGTTCATTGCAACCATAATTATTTGACTCGGAGTCAATTGCGCACACTAAGACCACAGACATGCCTTGATGATAACGTAATTTCTGTCATGTCTGA TGCCCTAACCTTAGCTGAGAGGAGGAAGAAGAAAGGTTATATAAATTGGTACCTTCCAATTTTTTTTTCGGAGTGCGCATATGATACATCCGAGTGTATC TCTTTTGCAAAGAAACACATGTTCAGGGAGAATTATATGTCTGCTCTGTTCAGCTGTGAGAAGATGTATGTTCCTGTCTTTGACAAGGAAAGAAGACACT TCTATCTATTTGTTCTGCATATGAAGAAGCAAGTTGTTGAGATTTGGGACTCATTAGCTAAATCTAGTGGCAGTTCCGTCGACAAGAGATTGCCTAACAT GTTGGCTATCCTGGATATCCTATTCGAAGATGATATACAACAGAACTACCCTGATGGCTGGTCTTTTGCAAGTTTTTCAGTGGACAGATCACCGAATGTC CCACAACAAACCAACGGATATGACTGTGGGGTTTATGTTATCAAGTTTATGCTAGCACCAGAAGAAGCGACTCAACCTGATTTTGTTTTCGACAGCGATA CGGAGAGATTGGATGTGGTGTTGAGATTGCTCGATGGTAATGTCAACTCATGCAGAAATGAATTGGCTGCTAAGGCTGAGGCATATTTTCTAAGAAGTTC AGGAACCAATGACTCCTTAAGAATATATGTCCAGAATAAGGATGAGGAGACAGCAAACAAATATAGCATGCTGAAAGCAATCAATGCTAACGTAAACCCA GCATTAAATCAAATGTGA
AA sequence Show only first row Show all	>Potri.017G018801.1 pacid=42814169 polypeptide=Potri.017G018801.1.p locus=Potri.017G018801 ID=Potri.017G018801.1.v4.1 annot-version=v4.1 MAPPLLEKLMECAKAIEDGDLKHADSLFKEIGLESSTEANLATRKVVKYFAEALVRRLYKLYPRNPMPLVRFREDMDILGCKFEPFLSFASYTIMPPFYD ALRGKKQVHIIDFSVAVDIWQHATLMKVLASELGSRLSYRITFVGPKLSKHLGYLKLISLILTKTAENHQIDFEYGEYLANSVDEIVGATLQLGRRNKEE AVVVEWEFELHKLLAVPSDKFNLVMSRLKDLKPEVMVIVEQEADHNSPDLMDRLGKSFKYYSVMFDSLEEDKFEKLEDYRVLWERNFRRQISKVVAEEGI GYVERHETWAQWRARLFRAGFHPARIMFRETMLFNNKTNQYRIEEKNRRPLLCRLDYPFAISSAWKPDLTHDESISMEIGDLGSMLGSFNMAQDASRESG KASKSVSHEDDADDATIMMRGSIWSTECFSINQIAASAELFDILEYVCHVHDLPMALTWISDRREDGTNSREKFRLHIVDTACFVNDVGMKGFVEACVEG PPLEEGQGIAGKALQSKMQFVPEVADLDAIDYPFLHVAWEFGLHAVLAIKLASTYMSSVDYILELVFPLETRELSEQLVLMKEIISTLTKNCGNAWRLWG NRAGIEKAGKSGETAAIVSGSSPQGFSDTGGLNTEDITITLDSCLSDGHGEQEVEGQTRGIGEQARTTGITLPKSPHIPRPIKPPSSYKLRSKVWIDFYK LRDENGAEWAICKHCKKRYRGESTRGTANLLKHLRNCQKKREAEQRTPKDQPVPFMVIEADSLEHFELIDNIFSPSLDETIDRLMSSSRKQQGNSEHQMP RHQAGPFKVIKSTSPEDLKLINYIFYSSLDESEIVVHCNHNYLTRSQLRTLRPQTCLDDNVISVMSDALTLAERRKKKGYINWYLPIFFSECAYDTSECI SFAKKHMFRENYMSALFSCEKMYVPVFDKERRHFYLFVLHMKKQVVEIWDSLAKSSGSSVDKRLPNMLAILDILFEDDIQQNYPDGWSFASFSVDRSPNV PQQTNGYDCGVYVIKFMLAPEEATQPDFVFDSDTERLDVVLRLLDGNVNSCRNELAAKAEAYFLRSSGTNDSLRIYVQNKDEETANKYSMLKAINANVNP ALNQM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.017G018801 [exp]	0	1
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Potri.001G080000 [exp]	2.00	0.9705
AT3G54490		RPB5E	"RNA polymerase II fifth large...		Potri.003G200450 [exp]	3.00	0.9276
AT5G04000			unknown protein		Potri.016G044001 [exp]	4.89	0.9277
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.002G106566 [exp]	6.32	0.9247
AT5G12260			unknown protein		Potri.012G121826 [exp]	6.92	0.9388
AT1G54850			HSP20-like chaperones superfam...		Potri.013G024900 [exp]	7.74	0.9186
AT2G28580			Plant protein of unknown funct...		Potri.007G132300 [exp]	8.36	0.9189
AT1G13480			Protein of unknown function (D...		Potri.018G008300 [exp]	9.05	0.8577
AT5G17620			unknown protein		Potri.013G072300 [exp]	9.16	0.9279
AT4G37940	MADS	AGL21	AGAMOUS-like 21 (.1)		Potri.009G079000 [exp]	10.00	0.8771

Compare expression of checked genes

Potri.017G018801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.