Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37650 405 / 2e-137 GRAS SGR7, SHR SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) AT3G49950 186 / 4e-54 GRAS GRAS family transcription factor (.1) AT2G04890 170 / 3e-48 GRAS SCL21 SCARECROW-like 21 (.1) AT5G48150 166 / 3e-46 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G21450 163 / 3e-44 GRAS SCL1 SCARECROW-like 1 (.1) AT1G50600 157 / 2e-42 GRAS SCL5 scarecrow-like 5 (.1) AT3G13840 155 / 9e-42 GRAS GRAS family transcription factor (.1) AT4G17230 147 / 7e-39 GRAS SCL13 SCARECROW-like 13 (.1) AT3G54220 147 / 3e-38 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT3G03450 143 / 2e-37 GRAS RGL2 RGA-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G132000 [exp] 693 / 0 AT4G37650 410 / 4e-140 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.007G063300 [exp] 427 / 2e-146 AT4G37650 576 / 0.0 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.017G041500 [exp] 177 / 1e-50 AT3G49950 370 / 2e-125 GRAS family transcription factor (.1) Potri.007G119000 [exp] 177 / 2e-50 AT3G49950 369 / 7e-125 GRAS family transcription factor (.1) Potri.005G186500 [exp] 177 / 2e-49 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.002G073400 [exp] 168 / 4e-46 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.007G053500 [exp] 164 / 9e-46 AT3G49950 524 / 0.0 GRAS family transcription factor (.1) Potri.005G145600 [exp] 163 / 2e-45 AT3G49950 521 / 0.0 GRAS family transcription factor (.1) Potri.001G409500 [exp] 162 / 6e-44 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019361 [exp] 511 / 2e-179 AT4G37650 403 / 5e-136 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10025200 [exp] 402 / 2e-137 AT4G37650 484 / 8e-169 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10019281 [exp] 391 / 3e-132 AT4G37650 509 / 2e-177 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10012089 [exp] 384 / 4e-130 AT4G37650 483 / 2e-167 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10011542 [exp] 381 / 2e-127 AT4G37650 499 / 3e-172 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10014852 [exp] 170 / 6e-48 AT3G49950 504 / 3e-178 GRAS family transcription factor (.1) Lus10011076 [exp] 167 / 1e-46 AT3G49950 502 / 2e-177 GRAS family transcription factor (.1) Lus10039709 [exp] 167 / 2e-46 AT3G49950 350 / 3e-117 GRAS family transcription factor (.1) Lus10012323 [exp] 166 / 1e-45 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10018498 [exp] 162 / 7e-45 AT3G49950 347 / 3e-116 GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.017G019900.2 pacid=42813175 polypeptide=Potri.017G019900.2.p locus=Potri.017G019900 ID=Potri.017G019900.2.v4.1 annot-version=v4.1 ATGGACATAACTCTCTTCAGTCCAAAAGACACACTGACACACTTCTTTCCTTCCCACCAGCAAAGCAATGATCAAGTAGCAGCTATAGACATGCAAAGCA ATAGCAGCAACAACAACAATAATCAGCCTCAAACCAGCCATACATCAACAAGCCGGTCTTCGGACTCCGGTGAGGCCTGTGGAGGAGGAAACAAGTGGGC ATCAAAGCTTCTTAGTGAGTGTGCAAGAGCAATCTCAGAGAAGGACTCTAGCAAGATCCACCACCTTCTATGGATGTTAAATGAGCTTGCCTCTCCTTAT GGAGATTGTGATCAGAAATTGGCATCTTATTTCTTGCAAGCTCTATTCTGTAAGGCTACCGAGTCTGGTCAACGGTGTTTCAAAACCCTAACAACAGTAG CTGAAAAGAGCCACTCCTTTGATTCAGCTAGGAAATTGATACTAAAATTCCAAGAGGTAAGCCCGTGGACTACTTTCGGTCATGTAGCTTCAAATGGTGC AATTTTGGAGGCCTTAGATGGGGAAAGCAAACTTCACATAATTGATATCAGCAATACCCTTTGCACACAGTGGCCTACTTTGCTAGAAGCTTTAGCCACA AGAAATGATGAGACGCCGCGATTAAAGCTCACCGTTGTGGTAACTGCTAGCATTGTAAGATCAGTCATGAAAGAAATTGGCCAAAGAATGGAGAAGTTTG CTAGGTTAATGGGAGTGCCCTTTGAGTTTAAAGTAATTAGTGTGCTAAATCATATAGGAGAGCTCACAAAGGAAGGACTGGGTGTTCAAGAAGATGAAGC AGTCGCGATTAATTGCATTGGGGCATTGAGAAGAGTTGAAGTAGATGAAAGAAGTTCTGTAATCCAGTTGTTCCGATCACTTAACCCTCGAGTTGTGACA ATTGTAGAGGAAGAAGCTGATTTTACTAGCTCAAGATATGACTTCGTCAAGTGCTTTGAAGAGTGCCTGAGGTATTATACACTATATTTTGAGATGCTAG AGGAGAGCTTTGTCCCAACTAGTAATGAGAGATTGATGTTGGAGAGGGAATGTTCAAGGAACATAGTTAGGGTTTTGGCTTGTGATGAAGAAACTGGTGG AGGAGAGTGTGAAAGAAGAGAGCGGGGTGTCCAATGGTCTGAAAGGCTAAGGGAGGCATTTTCCCCTGTTGGATTCAGTGATGATGTTGTCGATGATGTC AAGGCATTGCTTAAGAGATACAAAGCTGGGTGGGCACTTGTGCTACCTCAAGGAGATCATGAGTCAGGAATTTACCTAACATGGAAAGAGGAACCTGTAG TATGGGCTTCTGCATGGAAACCCTAA
AA sequence Show only first row Show all	>Potri.017G019900.2 pacid=42813175 polypeptide=Potri.017G019900.2.p locus=Potri.017G019900 ID=Potri.017G019900.2.v4.1 annot-version=v4.1 MDITLFSPKDTLTHFFPSHQQSNDQVAAIDMQSNSSNNNNNQPQTSHTSTSRSSDSGEACGGGNKWASKLLSECARAISEKDSSKIHHLLWMLNELASPY GDCDQKLASYFLQALFCKATESGQRCFKTLTTVAEKSHSFDSARKLILKFQEVSPWTTFGHVASNGAILEALDGESKLHIIDISNTLCTQWPTLLEALAT RNDETPRLKLTVVVTASIVRSVMKEIGQRMEKFARLMGVPFEFKVISVLNHIGELTKEGLGVQEDEAVAINCIGALRRVEVDERSSVIQLFRSLNPRVVT IVEEEADFTSSRYDFVKCFEECLRYYTLYFEMLEESFVPTSNERLMLERECSRNIVRVLACDEETGGGECERRERGVQWSERLREAFSPVGFSDDVVDDV KALLKRYKAGWALVLPQGDHESGIYLTWKEEPVVWASAWKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Potri.017G019900 [exp]	0	1
AT5G04980			DNAse I-like superfamily prote...		Potri.010G247800 [exp]	1.41	0.9473
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Potri.006G037000 [exp]	6.48	0.9069	PIN8,Pt-PIN2.2
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.001G003000 [exp]	16.12	0.8883
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Potri.002G052100 [exp]	16.34	0.9142	CPS.1
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G284200 [exp]	16.91	0.8957
AT5G14340	MYB	AtMYB40	myb domain protein 40 (.1)		Potri.001G336700 [exp]	21.33	0.9110
AT5G10530			Concanavalin A-like lectin pro...		Potri.007G004200 [exp]	22.97	0.9137
					Potri.002G068501 [exp]	29.39	0.8657
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Potri.010G250500 [exp]	30.78	0.8700
					Potri.001G019985 [exp]	32.61	0.9020

Compare expression of checked genes

Potri.017G019900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.