Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10780 275 / 9e-78 LRR and NB-ARC domains-containing disease resistance protein (.1) AT4G27190 268 / 6e-75 NB-ARC domain-containing disease resistance protein (.1) AT1G12210 265 / 2e-74 RFL1 RPS5-like 1 (.1) AT4G26090 265 / 3e-74 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT5G05400 264 / 5e-74 LRR and NB-ARC domains-containing disease resistance protein (.1) AT4G27220 261 / 5e-73 NB-ARC domain-containing disease resistance protein (.1) AT1G12280 255 / 4e-71 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G43740 254 / 6e-71 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G43730 252 / 3e-70 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G63020 252 / 6e-70 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014312 [exp] 650 / 0 AT4G27220 300 / 3e-86 NB-ARC domain-containing disease resistance protein (.1) Potri.019G020500 [exp] 649 / 0 AT4G27220 326 / 2e-95 NB-ARC domain-containing disease resistance protein (.1) Potri.001G405100 [exp] 642 / 0 AT4G27220 311 / 1e-90 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145566 [exp] 640 / 0 AT4G27220 348 / 7e-105 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014338 [exp] 640 / 0 AT4G27220 342 / 2e-101 NB-ARC domain-containing disease resistance protein (.1) Potri.001G404800 [exp] 639 / 0 AT4G27220 323 / 5e-95 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014380 [exp] 634 / 0 AT4G27220 302 / 5e-87 NB-ARC domain-containing disease resistance protein (.1) Potri.011G124000 [exp] 628 / 0 AT4G27220 312 / 8e-92 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014336 [exp] 623 / 0 AT4G27220 320 / 2e-92 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039509 [exp] 164 / 7e-41 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10024173 [exp] 159 / 4e-39 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 158 / 5e-39 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 137 / 3e-32 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 135 / 8e-32 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 134 / 1e-31 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 134 / 1e-31 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10022792 [exp] 134 / 2e-31 AT3G14470 343 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Lus10005321 [exp] 133 / 3e-31 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10020016 [exp] 129 / 5e-30 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0361 [poplar] [flax] C2H2-zf PF02892 [poplar] [flax] zf-BED BED zinc finger CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.017G035300.2 pacid=42814353 polypeptide=Potri.017G035300.2.p locus=Potri.017G035300 ID=Potri.017G035300.2.v4.1 annot-version=v4.1 ATGGCTGGAGGAAGTGATCCATTTCAGAGTTATTTTGAGAAAGTGGATGGTGGTTTATTGAAGTGCATTTTTTGTGAGAAGACATTGGCTGGAAGTACTT CCACTACAAGGATGAAATATCATCTGGCAAGAGTTGGAGGTGGTGGTGTTAAAATTTGTGAAAAAGTAACTCCAGATGTTCAACGAGCAGCGTTTGATAA GCTTCCTGACAGAATGCGTGGGAGCATGCCAAGTTCAAGCAATAATATAATAGTTACTGCAGATTCAGATCCTGCGCAAGATTTAGAAATGCAACAACAA GGACAATCTCTTTTGGATGATTTTTCATGGATGGATAGCTTGACTTGGGAAGAGATTGTGCTTCCTGAGGAGACCATGGTTCCTAGCATGCATATGCCCG ATGCACCTGAGACTGGATTGGGAATAGAGCCAGCAGTTCAAGCATTTGAAACGGATATGAATAACATCACATCTTCATTGACGAGGGATGTTGAGTTAAG CAGTGGTATAGAGAGTCGGGAATTGATGCAGGCTGTTACTGAGAGAGGAAGCTGTTCTAAAATGCCTGTCGATAAGAGTGTGCCAAGTTCAAGCAATAAC GAGGGAATTAATGCAGCTTCAACTGCTTTGCGGGGCTTAGAAATGGAACAAGAAGAACAACCTCTTTCGGATGAACGAGGACGGAAGGGTTTTCTGATTG GGGGGGAGACTGAGCTTGTCGAGGAACCTAGAGCTCCTGTCGTTCTTATGCCAGATGAACCCGAGACTAGACAAAGAACAGAGCAAGCACATCAGTCATT TGAAATGAACTTGAATAACATCTCATCCTCATCAATGAGGGATTTTGAGTTAAGAATTGCTAGACTGATCTTGAGACCGGAATTGATGCAGTCTGTTGTT GAGAGACGACCCTCTTCTAAAAGTCCTGTACATAAGAAACGTAGGACAGGAAGATATGTATTGCCGACAACGAAGCTAGTGGTGGGCCAAGCGTTTGAAA GAAATATGAAGGGTGTCTGCTCTTGGTTGTTGAATGATGAGGTCTTATGCATTGGCATTTACGGGATGGGGGGAATTGGAAAGACAACTTTGGCTACGCA TATCCACAATCAGCTTCAAGAGAAACCAGACATTTTTCCTCGTGTTTGTTGGATTTCTGTGCCTCAAGAATTTAGCGTTCACGCATTGCAGGATCTCATT GCCGAAGCTTTTGGTTTATATCTTGGGAATAGAAAAGATGTGGTGAACAGAGCCGGGGAGCTATGGACAACATTGAGTGTGACAAAATGTGTTTTAATTA TTGATAATTTGTGGAATCATTTTCCTCTTGATAAAGTGGGAATACCTCTTAAAACAGATGGGTGTAAGCTGATTCTTACAACTAGATCATTGGACACATG TCGAAAAATGGATTGCCAAAGGATAATCAAAGTGGAGCCTCTTTCTGAGGATGAGGCTTGGGATTTGTTCATAGACAGATTAGGGCATGGTGTTACACTT TGTCCTGAAATGAAAAAAACGGCAGTGTCTATTGTGAAGAAGTGTTCTGGTTTGCCTCTCGGAATCATGACAATGGCTGGAAGCATGAAGGGAGTGGATG ATGTATCTCAGTGGAGAGATGCATTGCGGGAACCAGCAAGTTCAGAAAGTGGAACATGTGACACGGAAACTGATGTATTTCAGATATTGAAATTTAGCTA TGTTCAGTTAAAACATAAAGCAATTAAAGATTGCTTCTTATATTGTGCATTGTTTCCAAAAGACAAGAAGATCAGGAGAGAGGACTTGATAGAGTATTTG ATTGATGAGGGTATAGTAAAAAAAATGGGGAGTAGGCAAGCGCAATTTGATCGGGGCCATACCATGCTTAATCAACTTGAAAATGCCAGCTTATTAGAAG GTTCCAGGGACGAAGAAAATTACAGATATGTCAAGATGCATGATTTGATTTGGGATATGGCTGTGAAAATAATGAACGAAAGTGGGAGTGATATGGTTCA AGCAGGTGCACAACTAACAGAATTACCCGATGGAAGATGGTGGAGAGATAATCTGTCAAGAGTTTCACTCGTGGAAAATAGAATCGAGAATATTCCAACA GACTTTTCACCAATGTGCCCCCGTCTGTCAACATTATTGTTATGCAGAAACTACAAATTGAATTTGGTTGAGGATTCTTTTTTCCAGCACCTCATCGGAC TCAAGGTTCTTGATCTTTCCGACACAGATATAGAGAAGTTGCCGGATTCTATTTGTCATCTGACGAGTCTCACTGCATTGTTGCTGGGATGGTGTGCAAA GCTGAGTTATGTACCATCATTAGCCAAGCTTAAGGCTATGGAGAAGTTGGATCTCAGTTGCACTGGACTTGAAGATTTGCCCGAGGGAATGGAAAGGCTG GAGGATCTCAGGTATCTTAATCTTGATGGAAGTGGGGTGCGTGTTTTACGGTCGGGTATTTTACCCCAACTCTCAAAATTACAGTTCCTCAAGCTTCATC AGAAAGCTGAAGTTGTTCTCTCAATTAGAGGAGATGAAATTTCCAGATTATATCATTTGGAAACTTTGGAATGCAACTTCCGTGATCTAGACGATTTCGG ATTTTTCCAATCTGGACGGAGAGTTTCACAAATTGCATGCAAGGTTACTGTAGGACGACCTTCTTTCTCTTCACTTGAAGATCTTAATTATACAAGATCG AAGTCTGGGTTAATTAAAGAGGCTTGGTTTTATGACCTCATGATTGACAATGCAGTTTGTCTGTTCCCGCGCTTCTTTACAAAAGTAGTTATTGTGAGAT GTCAAAACATGAGAAGCTTATGTCCATCATATGAAATTAAAGTGCTTAGCGGGCTTGAGATTCTACACCTTGATGGTTTGATGATCTTAGAAACCCTTTT TGAAGCAGAACCTTCAGAGCTACGTACTGCTGGTGTCTTCTACAATCTCAGAGAGATCGTGATACATAAATGTCATAGGATAAAGGTGCTGCTCCCTTGG TTTTTGTCTACACTCCGATTGGAAGTGATTGTAGTCGAAGATTGTTACAACATGCAGGAGATAATGGGAAGTGGTGAAGTTTTGGTACATGGAGAGGAGC ATTCCTCTCCATTTGGTAGTTTTGATACGACATTGAGGGTTTTGGTATTGAAGAAATTACCAAATTTGAAAAGCATTTATTCTGGAAGACTTATATGCAA TTCTCTCGAAGAAATTACTGTGGGTGATTGCCCGCAGCTAACGAGGATCCCGATCACTATTTTCCGTTCTCTTAAGAAAATTGAAGTAGATCCTGAAAGT TTGTTGAACACAGTTGAGAATGTTTCATGA
AA sequence Show only first row Show all	>Potri.017G035300.2 pacid=42814353 polypeptide=Potri.017G035300.2.p locus=Potri.017G035300 ID=Potri.017G035300.2.v4.1 annot-version=v4.1 MAGGSDPFQSYFEKVDGGLLKCIFCEKTLAGSTSTTRMKYHLARVGGGGVKICEKVTPDVQRAAFDKLPDRMRGSMPSSSNNIIVTADSDPAQDLEMQQQ GQSLLDDFSWMDSLTWEEIVLPEETMVPSMHMPDAPETGLGIEPAVQAFETDMNNITSSLTRDVELSSGIESRELMQAVTERGSCSKMPVDKSVPSSSNN EGINAASTALRGLEMEQEEQPLSDERGRKGFLIGGETELVEEPRAPVVLMPDEPETRQRTEQAHQSFEMNLNNISSSSMRDFELRIARLILRPELMQSVV ERRPSSKSPVHKKRRTGRYVLPTTKLVVGQAFERNMKGVCSWLLNDEVLCIGIYGMGGIGKTTLATHIHNQLQEKPDIFPRVCWISVPQEFSVHALQDLI AEAFGLYLGNRKDVVNRAGELWTTLSVTKCVLIIDNLWNHFPLDKVGIPLKTDGCKLILTTRSLDTCRKMDCQRIIKVEPLSEDEAWDLFIDRLGHGVTL CPEMKKTAVSIVKKCSGLPLGIMTMAGSMKGVDDVSQWRDALREPASSESGTCDTETDVFQILKFSYVQLKHKAIKDCFLYCALFPKDKKIRREDLIEYL IDEGIVKKMGSRQAQFDRGHTMLNQLENASLLEGSRDEENYRYVKMHDLIWDMAVKIMNESGSDMVQAGAQLTELPDGRWWRDNLSRVSLVENRIENIPT DFSPMCPRLSTLLLCRNYKLNLVEDSFFQHLIGLKVLDLSDTDIEKLPDSICHLTSLTALLLGWCAKLSYVPSLAKLKAMEKLDLSCTGLEDLPEGMERL EDLRYLNLDGSGVRVLRSGILPQLSKLQFLKLHQKAEVVLSIRGDEISRLYHLETLECNFRDLDDFGFFQSGRRVSQIACKVTVGRPSFSSLEDLNYTRS KSGLIKEAWFYDLMIDNAVCLFPRFFTKVVIVRCQNMRSLCPSYEIKVLSGLEILHLDGLMILETLFEAEPSELRTAGVFYNLREIVIHKCHRIKVLLPW FLSTLRLEVIVVEDCYNMQEIMGSGEVLVHGEEHSSPFGSFDTTLRVLVLKKLPNLKSIYSGRLICNSLEEITVGDCPQLTRIPITIFRSLKKIEVDPES LLNTVENVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10780			LRR and NB-ARC domains-contain...		Potri.017G035300 [exp]	0	1
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Potri.003G216651 [exp]	2.82	0.9321
AT1G27170			transmembrane receptors;ATP bi...		Potri.011G012801 [exp]	4.00	0.9396
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G014501 [exp]	6.55	0.9026
AT5G01750			Protein of unknown function (D...		Potri.016G130800 [exp]	6.92	0.9200
AT4G25550			Cleavage/polyadenylation speci...		Potri.012G140301 [exp]	10.00	0.9150
AT5G03860		MLS	malate synthase (.1.2)		Potri.015G092000 [exp]	11.31	0.8894
AT1G27170			transmembrane receptors;ATP bi...		Potri.006G282100 [exp]	11.95	0.9235
AT1G61310			LRR and NB-ARC domains-contain...		Potri.001G444600 [exp]	12.04	0.9126
AT5G36930			Disease resistance protein (TI...		Potri.011G008164 [exp]	14.49	0.9358
AT4G27190			NB-ARC domain-containing disea...		Potri.001G419800 [exp]	14.69	0.9150

Compare expression of checked genes

Potri.017G035300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.