Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49950 369 / 3e-125 GRAS GRAS family transcription factor (.1) AT4G37650 195 / 2e-56 GRAS SGR7, SHR SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) AT5G48150 166 / 7e-46 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G04890 164 / 7e-46 GRAS SCL21 SCARECROW-like 21 (.1) AT1G50600 166 / 2e-45 GRAS SCL5 scarecrow-like 5 (.1) AT1G21450 154 / 7e-41 GRAS SCL1 SCARECROW-like 1 (.1) AT5G67411 144 / 7e-41 GRAS GRAS family transcription factor (.1) AT5G17490 141 / 1e-36 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT3G03450 140 / 3e-36 GRAS RGL2 RGA-like 2 (.1) AT1G50420 139 / 5e-36 GRAS SCL-3, SCL3 scarecrow-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G119000 [exp] 830 / 0 AT3G49950 369 / 7e-125 GRAS family transcription factor (.1) Potri.005G145600 [exp] 387 / 2e-131 AT3G49950 521 / 0.0 GRAS family transcription factor (.1) Potri.007G053500 [exp] 376 / 3e-127 AT3G49950 524 / 0.0 GRAS family transcription factor (.1) Potri.007G063300 [exp] 201 / 7e-59 AT4G37650 576 / 0.0 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.017G019900 [exp] 197 / 3e-58 AT4G37650 405 / 1e-137 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.007G132000 [exp] 189 / 3e-55 AT4G37650 410 / 4e-140 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.005G186500 [exp] 173 / 5e-48 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.001G409500 [exp] 170 / 6e-47 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.014G164400 [exp] 166 / 2e-45 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039709 [exp] 617 / 0 AT3G49950 350 / 3e-117 GRAS family transcription factor (.1) Lus10018498 [exp] 600 / 0 AT3G49950 347 / 3e-116 GRAS family transcription factor (.1) Lus10014852 [exp] 370 / 1e-124 AT3G49950 504 / 3e-178 GRAS family transcription factor (.1) Lus10011076 [exp] 360 / 5e-121 AT3G49950 502 / 2e-177 GRAS family transcription factor (.1) Lus10012089 [exp] 181 / 2e-51 AT4G37650 483 / 2e-167 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10025200 [exp] 179 / 5e-51 AT4G37650 484 / 8e-169 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10019281 [exp] 177 / 6e-50 AT4G37650 509 / 2e-177 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10011542 [exp] 174 / 2e-48 AT4G37650 499 / 3e-172 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10012323 [exp] 169 / 5e-47 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10042776 [exp] 166 / 3e-45 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.017G041500.1 pacid=42813274 polypeptide=Potri.017G041500.1.p locus=Potri.017G041500 ID=Potri.017G041500.1.v4.1 annot-version=v4.1 ATGAAAACTGAACTAAGAGGAAACACTACCTCCATTTCTCTTCAAAACCCTAGTCTCTTCAACACCCCTCAAAGCTCTCTCTCGGGTGCACTTAAAGGGT GTCTTGGTAGCCTTGATGGAGCCTGTATAGAAAAGCTTCTACTTCATTGCGCTAGTGCCCTAGAGCACAATGATGGGACTTTGGTTCAACAAGTGATGTG GGTGCTTAACAATGTTGCTTCTTTGGTTGGTGACCCTAACCAAAGGCTCACTTCTTGGTTTCTCAGGGCACTTGTCTCTAGGGCATCCAAGGTTTGTCCC ACCGCGATGGATTTTGATGGTAGCAGTACAATTCGGAGGAGGCAAATGTCGGTGACCGAGCTTGCCGTGTACGTTGATCTAATCCCTTGGCACAGGTTTG GATTTTGTGCATCAAACAGTGCCATTTTTAAGGCAATTGAAGGTTACTCTAAAGTTCATATCTTAGATTTTAGCATCACTCATTGTATGCAGTGGCCTAC TCTTATAGATGCTTTGGCTAAAAGGCCTGAAGGGCCTCCTTCACTTAGGATCACAGTTCCCTCTTGTAGGCCACCAGTCCCTCCTTTTCTTAATGTATCA TGTGAAGAAGTAGGTCTCCGTTTGAGCAATTTCGCTAAGTTTAGGGATGTTCCTTTTGAATTCAATGTGATTGATGACCCATCTTATTTAGCTTCAACTG AAATTATGCCCAAAGAATCTTCTCATGACTTTCATTTTGAGTCACTATTGAATCACTTGACTCCTTCAGTGCTTAATCTTAGAGATGATGAGGCCTTGGT GATAAATTGCCAAAACTGGTTAAGATATTTGTCTAATATTGAGCAACAGGGAAGTAGTGTCCAATATTCTTCCTTAAGAGATGCTTTCCTTCGTACAGTA AAAGCTTTCAATCCTTGTATTGTAATTGTTGTCGACGAAGATTCTGATTTAAGTGCACCAAGTCTCTCATCTAGGATTACTACTTGCTTCAATTATCTAT GGATACCATTCGATGCTTTGGAAACTTTCTTGCCTAAAGATAGTAGCCAAAGGATTGAATATGAGTCCGATATTGGTCACAAAATCGAGAATATTATCAG TTTTGAAGGGCTTCAGAGGATAGAGAGGTTAGAACCCGGGATTAAAGTATCAGAAAGGATGAAGAATGCAGGATTTTTTAGTGTTCCATTCTGTGAAGAC ACAATTGGTGAAGTTAGATCCTTGCTAGAAGAGCATGCTAGTGGTTGGGGCATGAAAAGAGGAGAAGATCACATGTTAATGCTCACATGGAAGGGTCACA ACTCAGTTTTTGCCACAGCTTGGGTCCCAATTGATTTGCAGGATTAA
AA sequence Show only first row Show all	>Potri.017G041500.1 pacid=42813274 polypeptide=Potri.017G041500.1.p locus=Potri.017G041500 ID=Potri.017G041500.1.v4.1 annot-version=v4.1 MKTELRGNTTSISLQNPSLFNTPQSSLSGALKGCLGSLDGACIEKLLLHCASALEHNDGTLVQQVMWVLNNVASLVGDPNQRLTSWFLRALVSRASKVCP TAMDFDGSSTIRRRQMSVTELAVYVDLIPWHRFGFCASNSAIFKAIEGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPSCRPPVPPFLNVS CEEVGLRLSNFAKFRDVPFEFNVIDDPSYLASTEIMPKESSHDFHFESLLNHLTPSVLNLRDDEALVINCQNWLRYLSNIEQQGSSVQYSSLRDAFLRTV KAFNPCIVIVVDEDSDLSAPSLSSRITTCFNYLWIPFDALETFLPKDSSQRIEYESDIGHKIENIISFEGLQRIERLEPGIKVSERMKNAGFFSVPFCED TIGEVRSLLEEHASGWGMKRGEDHMLMLTWKGHNSVFATAWVPIDLQD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49950	GRAS		GRAS family transcription fact...		Potri.017G041500 [exp]	0	1
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Potri.013G009400 [exp]	3.74	0.9524	VP2.2
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Potri.016G020400 [exp]	6.32	0.9115
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.016G021300 [exp]	7.21	0.9410
AT5G67150			HXXXD-type acyl-transferase fa...		Potri.003G057200 [exp]	15.16	0.9329
AT3G61470		LHCA2	photosystem I light harvesting...		Potri.001G056700 [exp]	16.34	0.9397
AT3G57070			Glutaredoxin family protein (....		Potri.016G038600 [exp]	16.43	0.9132
AT2G40475		ASG8	ALTERED SEED GERMINATION 8, un...		Potri.016G133200 [exp]	18.97	0.8611
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.016G021800 [exp]	22.09	0.9247
AT4G37470			alpha/beta-Hydrolases superfam...		Potri.005G145000 [exp]	26.58	0.9288
AT3G54890		LHCA1	photosystem I light harvesting...		Potri.010G221100 [exp]	26.64	0.9203	1

Compare expression of checked genes

Potri.017G041500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.