Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80580 93 / 5e-22 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G28370 69 / 7e-14 AP2_ERF AtERF11 ERF domain protein 11 (.1) AT1G12980 71 / 8e-14 AP2_ERF DRN, ESR1 ENHANCER OF SHOOT REGENERATION 1, DORNROSCHEN, Integrase-type DNA-binding superfamily protein (.1) AT1G24590 69 / 4e-13 AP2_ERF ESR2, DRNL, SOB2, DRN-LIKE FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) AT1G53170 66 / 5e-13 AP2_ERF ATERF8, ATERF-8 ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4, ethylene response factor 8 (.1) AT3G15210 67 / 7e-13 AP2_ERF ATERF4, RAP2.5, ATERF-4 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) AT5G13330 66 / 9e-13 AP2_ERF RAP2.6L related to AP2 6l (.1) AT3G20310 66 / 1e-12 AP2_ERF ATERF7, ATERF-7 ethylene response factor 7 (.1) AT3G61630 67 / 2e-12 AP2_ERF CRF6 cytokinin response factor 6 (.1) AT1G72360 65 / 2e-12 AP2_ERF AtERF73, HRE1 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G313500 [exp] 385 / 3e-135 AT1G80580 90 / 5e-21 Integrase-type DNA-binding superfamily protein (.1) Potri.008G186300 [exp] 71 / 1e-13 AT1G24590 69 / 1e-12 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Potri.007G138100 [exp] 68 / 3e-13 AT5G44210 149 / 3e-45 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.005G087200 [exp] 69 / 4e-13 AT2G33710 87 / 4e-20 Integrase-type DNA-binding superfamily protein (.1.2) Potri.013G158500 [exp] 69 / 5e-13 AT4G27950 124 / 1e-32 cytokinin response factor 4 (.1) Potri.001G067600 [exp] 67 / 6e-13 AT5G13330 130 / 1e-37 related to AP2 6l (.1) Potri.004G047500 [exp] 66 / 7e-13 AT1G28360 157 / 3e-49 ERF domain protein 12 (.1) Potri.017G013700 [exp] 67 / 8e-13 AT5G44210 103 / 2e-27 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.011G056900 [exp] 66 / 8e-13 AT1G28360 149 / 6e-46 ERF domain protein 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014345 [exp] 108 / 4e-28 AT1G12980 97 / 1e-24 ENHANCER OF SHOOT REGENERATION 1, DORNROSCHEN, Integrase-type DNA-binding superfamily protein (.1) Lus10026053 [exp] 108 / 5e-28 AT5G18560 97 / 7e-24 Integrase-type DNA-binding superfamily protein (.1) Lus10035076 [exp] 70 / 2e-13 AT1G24590 143 / 2e-40 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Lus10017907 [exp] 69 / 3e-13 AT1G24590 134 / 1e-37 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Lus10033938 [exp] 67 / 2e-12 AT4G23750 201 / 6e-62 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10035129 [exp] 66 / 2e-12 AT5G13910 152 / 7e-46 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) Lus10039857 [exp] 65 / 3e-12 AT5G44210 138 / 8e-41 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10033664 [exp] 64 / 4e-12 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10003601 [exp] 65 / 6e-12 AT1G72360 144 / 2e-41 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10005805 [exp] 65 / 1e-11 AT5G61890 120 / 4e-32 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.017G053700.1 pacid=42813715 polypeptide=Potri.017G053700.1.p locus=Potri.017G053700 ID=Potri.017G053700.1.v4.1 annot-version=v4.1 ATGAACCACCAGAAATTGCTCCCTGTTCCGTTCTTCCCTCAGCCCGAAACATATCAAATGTTTCGGCTCCTAACTGAAAATCCATCGTTTCGTGGCTCTT TTTTAGAACCCCAAAATTCATTTTCTTCACCTTTAACCTTTAACCACTACAACCCCACAAGTTACCCTCCTGTTTCACCCGATATCTCGGCTTCTGTTTC ACTCTCCGATAGTTTCAAGAAATCACCAGACACACCACCGGTCCTTGATGGAATCGGTGCTATTGTTGGTCAACAAGTCCTTTTTGGTACGAATGACACC AAGAATTCAGAAGTATCGGGTCTCTCTTCAATTTCTCAACGTACTGGGTCAAAAACAAGTAAGCAAGAAAGTGGCGCTGTGAGAAGCAGTGTTAGTGATG GGGTTCCAATACGAAAGACCTACAGAGGGGTGAGAAAGAGGCCATGGGGGAGGTGGTCAGCTGAGATAAGAGATCGGATAGGAAGGTGCCGCCACTGGCT TGGAACATTCGACACCGCAGAGGAGGCAGCGCGTGCATATGACTCAGCTGCTAGAAGACTTAGAGGTGCAAAAGCAAGAACGAACTTTGAAATCCCTCCT GTTTTGCCTCCTGTATCTTCTTCTTCCTCTTCTCCACCAAGTGCATGCTCAGGTTCAATCTCTAATAACGCAGAAGCGAGGAAGAGGACTAACGTTAATA ACCACAGCAGCAAAATGGTTGGTAATGGTGGTAGGAAGTGTGCAGTTGTCACTTCTGTGGCACATTTGTTCAGTGATTTTGAAGGGAAAGGAACTAGTGC CGGTGGCAATGTGGAGCTCGACTTGAAATTGGGAATGGGGTCTGATGGTCATCGTGGTGGCAACAAGAGTGCTGCTAGTGCTCCTCCATCCATGTTGGTT TAG
AA sequence Show only first row Show all	>Potri.017G053700.1 pacid=42813715 polypeptide=Potri.017G053700.1.p locus=Potri.017G053700 ID=Potri.017G053700.1.v4.1 annot-version=v4.1 MNHQKLLPVPFFPQPETYQMFRLLTENPSFRGSFLEPQNSFSSPLTFNHYNPTSYPPVSPDISASVSLSDSFKKSPDTPPVLDGIGAIVGQQVLFGTNDT KNSEVSGLSSISQRTGSKTSKQESGAVRSSVSDGVPIRKTYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDSAARRLRGAKARTNFEIPP VLPPVSSSSSSPPSACSGSISNNAEARKRTNVNNHSSKMVGNGGRKCAVVTSVAHLFSDFEGKGTSAGGNVELDLKLGMGSDGHRGGNKSAASAPPSMLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80580	AP2_ERF		Integrase-type DNA-binding sup...		Potri.017G053700 [exp]	0	1
AT1G21460		SWEET1, AtSWEET...	Nodulin MtN3 family protein (....		Potri.002G072600 [exp]	2.44	0.7262
AT4G33790		G7, FAR3, CER4	FATTY ACID REDUCTASE 3, ECERIF...		Potri.009G145000 [exp]	12.00	0.7004
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.013G065100 [exp]	15.87	0.6278
					Potri.002G070101 [exp]	20.49	0.6761
AT4G37530			Peroxidase superfamily protein...		Potri.001G329200 [exp]	24.81	0.6214
AT1G21460		SWEET1, AtSWEET...	Nodulin MtN3 family protein (....		Potri.002G072800 [exp]	32.84	0.5854
AT3G49120		PRX34, PRXCB, A...	PEROXIDASE 34, ARABIDOPSIS THA...		Potri.001G011300 [exp]	34.11	0.5854
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Potri.006G252200 [exp]	35.49	0.5678
AT5G65640	bHLH	bHLH093	beta HLH protein 93 (.1.2)		Potri.002G108400 [exp]	36.74	0.5356
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Potri.006G176800 [exp]	37.52	0.5740

Compare expression of checked genes

Potri.017G053700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.