Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13640 339 / 4e-117 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT3G24120 333 / 5e-115 GARP Homeodomain-like superfamily protein (.1.2) AT1G79430 211 / 6e-66 GARP WDY, APL WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) AT3G04030 208 / 2e-64 GARP Homeodomain-like superfamily protein (.1.2.3) AT5G18240 184 / 2e-55 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5) AT3G12730 170 / 1e-51 GARP Homeodomain-like superfamily protein (.1) AT1G69580 170 / 2e-50 GARP Homeodomain-like superfamily protein (.1.2) AT2G01060 163 / 3e-48 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT5G45580 160 / 1e-47 GARP Homeodomain-like superfamily protein (.1) AT4G28610 146 / 1e-40 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G314800 [exp] 542 / 0 AT4G13640 345 / 2e-119 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.016G001200 [exp] 214 / 6e-68 AT4G13640 193 / 5e-60 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.013G060200 [exp] 206 / 2e-63 AT3G04030 462 / 3e-162 Homeodomain-like superfamily protein (.1.2.3) Potri.019G032700 [exp] 205 / 5e-63 AT3G04030 449 / 2e-157 Homeodomain-like superfamily protein (.1.2.3) Potri.008G081800 [exp] 202 / 1e-62 AT1G79430 335 / 6e-114 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.010G174100 [exp] 197 / 1e-60 AT1G79430 356 / 4e-122 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.008G087600 [exp] 182 / 2e-55 AT1G69580 276 / 2e-91 Homeodomain-like superfamily protein (.1.2) Potri.001G133400 [exp] 179 / 1e-54 AT5G45580 220 / 2e-71 Homeodomain-like superfamily protein (.1) Potri.010G167901 [exp] 176 / 6e-53 AT1G69580 262 / 5e-86 Homeodomain-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007132 [exp] 469 / 6e-168 AT4G13640 390 / 3e-137 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10016676 [exp] 444 / 5e-158 AT4G13640 380 / 2e-133 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10001844 [exp] 210 / 2e-64 AT1G79430 286 / 3e-93 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10001754 [exp] 208 / 9e-64 AT1G79430 292 / 2e-95 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10020264 [exp] 206 / 2e-63 AT3G04030 441 / 4e-154 Homeodomain-like superfamily protein (.1.2.3) Lus10002629 [exp] 205 / 4e-63 AT3G04030 440 / 9e-154 Homeodomain-like superfamily protein (.1.2.3) Lus10037169 [exp] 179 / 1e-54 AT1G69580 252 / 9e-83 Homeodomain-like superfamily protein (.1.2) Lus10038735 [exp] 177 / 2e-54 AT3G24120 177 / 8e-55 Homeodomain-like superfamily protein (.1.2) Lus10039123 [exp] 176 / 1e-53 AT3G24120 173 / 5e-53 Homeodomain-like superfamily protein (.1.2) Lus10036758 [exp] 176 / 4e-53 AT1G69580 258 / 9e-85 Homeodomain-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain CL0123 [poplar] [flax] PF14379 [poplar] [flax] Myb_CC_LHEQLE MYB-CC type transfactor, LHEQLE motif
Representative CDS sequence Show only first row Show all	>Potri.017G054800.1 pacid=42812927 polypeptide=Potri.017G054800.1.p locus=Potri.017G054800 ID=Potri.017G054800.1.v4.1 annot-version=v4.1 ATGTACTCTGCAATACACTCACTGCCTTTGGATGGACATGGGGACTTTCAAGCTTCATTAGATGGAATTAATCTGCCTGGGGATGCGTGCTTGGTTCTCA CCACGGATCCAAAGCCAAGGCTCCGCTGGACTGCTGAGTTACATGAGAGATTTGTTGATGCTGTTACTCAACTTGGTGGACCTGACAAAGCAACACCTAA GACAATTATGAGAACAATGGGGGTAAAAGGCCTCACCCTTTATCACTTGAAATCTCACCTACAGAAATACCGGTTGGGAAAGCAGTCCTGCAAGGAATCA ACTGATAACTCCAAGGATGTTGGGATTGCACCATCAGTTGCAGAAAGTCAGGATACTGGTTCATCGACATCTGCATCATCAAGAATGATTGCGCAGGATC TGAATGATGGTTACCAGGTTACTGAGGCTTTGAGAGTGCAGATGGAAGTCCAACGAAGATTGCATGAGCAGCTGGAGGTGCAACATCATCTCCAACTTCG CATTGAAGCTCAGGGGAAATACTTACAGTCAATACTTGAGAAAGCTTGTAAAGCTCTGAATGACCAGGCTGTTGCAACTGCAGGACTTGAAGCTGCTAGG GAAGAGCTTTCTGAATTAGCAATCAAGGTTTCCAATGAATGTGCAGGAATTGCCCCACTTGATACCATGAAAATGCCTTCCTTATCTGAACTTGCTGCTG CTTTAGGGAACAGAAATGCTTCCAATGTGCCTGCTCGCATTGGTGATTGCTCTGTCGAAAGCTGCTTGACTTCAACTAGTAGCCCAGTTTCTCCCATGGG TGTGGGCTCACAAGTTGCTTCCACGAAGAAAAGATCAAGGCCTGTGCTTGGTAACGGAGATTCATTGCCCTTCGAAGGCAACTTTCGGCAAGAAGTAGAA TGGACAATGAGTAATATTGTGGATGAATAG
AA sequence Show only first row Show all	>Potri.017G054800.1 pacid=42812927 polypeptide=Potri.017G054800.1.p locus=Potri.017G054800 ID=Potri.017G054800.1.v4.1 annot-version=v4.1 MYSAIHSLPLDGHGDFQASLDGINLPGDACLVLTTDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSCKES TDNSKDVGIAPSVAESQDTGSSTSASSRMIAQDLNDGYQVTEALRVQMEVQRRLHEQLEVQHHLQLRIEAQGKYLQSILEKACKALNDQAVATAGLEAAR EELSELAIKVSNECAGIAPLDTMKMPSLSELAAALGNRNASNVPARIGDCSVESCLTSTSSPVSPMGVGSQVASTKKRSRPVLGNGDSLPFEGNFRQEVE WTMSNIVDE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Potri.017G054800 [exp]	0	1
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.002G256300 [exp]	5.74	0.8648	Pt-SDD1.1
AT2G30520		RPT2	ROOT PHOTOTROPISM 2, Phototrop...		Potri.019G131600 [exp]	6.00	0.8535	RPT2.3
AT5G42960			unknown protein		Potri.014G181000 [exp]	6.24	0.8176
AT5G11650			alpha/beta-Hydrolases superfam...		Potri.006G237200 [exp]	15.23	0.7134
AT5G64170			dentin sialophosphoprotein-rel...		Potri.001G205800 [exp]	18.84	0.7421
					Potri.002G167500 [exp]	19.67	0.8442
AT3G55580			Regulator of chromosome conden...		Potri.008G059800 [exp]	20.12	0.7079
AT2G30300			Major facilitator superfamily ...		Potri.013G154000 [exp]	20.24	0.8375
					Potri.012G031150 [exp]	20.97	0.8274
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G151400 [exp]	23.23	0.8409

Compare expression of checked genes

Potri.017G054800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.