Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13620 216 / 1e-65 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G22190 109 / 4e-27 AP2_ERF RAP2.4 related to AP2 4, Integrase-type DNA-binding superfamily protein (.1) AT1G36060 109 / 9e-27 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G78080 101 / 1e-23 AP2_ERF CAF1, RAP2.4, WIND1 wound induced dedifferentiation 1, related to AP2 4 (.1) AT2G22200 96 / 5e-22 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G39780 96 / 6e-22 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G65130 95 / 1e-21 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G64380 88 / 4e-19 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G20880 86 / 3e-18 AP2_ERF AtERF53 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) AT3G16770 80 / 8e-17 AP2_ERF RAP2.03, ATEBP, RAP2.3 ,ERF72 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G315300 [exp] 598 / 0 AT4G13620 194 / 3e-57 Integrase-type DNA-binding superfamily protein (.1) Potri.007G090600 [exp] 112 / 5e-27 AT1G78080 205 / 4e-63 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.005G168700 [exp] 108 / 6e-26 AT1G78080 197 / 3e-60 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.002G094200 [exp] 105 / 7e-25 AT1G78080 228 / 1e-72 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.005G077300 [exp] 103 / 2e-24 AT1G78080 207 / 7e-64 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.001G092400 [exp] 95 / 2e-21 AT1G64380 181 / 1e-54 Integrase-type DNA-binding superfamily protein (.1) Potri.003G139300 [exp] 92 / 1e-20 AT1G64380 173 / 1e-51 Integrase-type DNA-binding superfamily protein (.1) Potri.013G135600 [exp] 88 / 1e-18 AT2G20880 180 / 2e-52 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) Potri.019G102200 [exp] 88 / 2e-18 AT2G20880 195 / 2e-58 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007124 [exp] 163 / 1e-46 AT4G13620 181 / 1e-54 Integrase-type DNA-binding superfamily protein (.1) Lus10016669 [exp] 158 / 1e-44 AT4G13620 184 / 2e-55 Integrase-type DNA-binding superfamily protein (.1) Lus10019665 [exp] 109 / 2e-27 AT4G39780 209 / 1e-67 Integrase-type DNA-binding superfamily protein (.1) Lus10000582 [exp] 107 / 9e-27 AT4G39780 208 / 2e-67 Integrase-type DNA-binding superfamily protein (.1) Lus10022497 [exp] 103 / 2e-24 AT1G78080 248 / 2e-80 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10003889 [exp] 101 / 1e-23 AT1G64380 197 / 4e-61 Integrase-type DNA-binding superfamily protein (.1) Lus10016801 [exp] 101 / 1e-23 AT1G78080 245 / 3e-79 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10033463 [exp] 100 / 4e-23 AT1G78080 248 / 2e-80 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10020913 [exp] 100 / 5e-23 AT1G78080 246 / 2e-79 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10001898 [exp] 100 / 6e-23 AT1G64380 210 / 1e-65 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.017G055400.1 pacid=42814106 polypeptide=Potri.017G055400.1.p locus=Potri.017G055400 ID=Potri.017G055400.1.v4.1 annot-version=v4.1 ATGGAGGATCAGTTCCCAAAAATAGAAACCTTCATGCACAAGGAATTGGTGGCAGCTTATTGTAGTTTTCATGGAATGGCAACAGGCTCAAAATATTTTG GTGATCCAACCATTTGGGGTGCTCTATCTGGGGCAACTTGTCGCGTCGAGGATGGAAATAGTGGCATGAAATCGCCGTCGCAATCGTCTTCTGAGAGATT ATTTTCGAGTTCGGAATCTAGTTCTTCGGCAGATGATCAGGTTTCAGGTACCGATTTGATCGGTAACATCCCTGGGTTTGGTAAACAGGATGTTGTCAAA CAAGATCATGAAAGTTGTTTCATGTCAGGAATGAATTCTATCAACGCTCTTGGAGCTAATTCAATATCTGATCAAACTATCAAAGAAAGCTCCATTCCTG TGAATTTCTTGGAACCTTTTCCAACATTAAAAAACCAAGCTCAAGTTCCTGAACCTCCTTCTCCATCTTCGTTATCAAAATCCCCAAATTTAACCTTGTT TTTGCAGGAACCAGCGGCAGCTTCATTGTTACATCCATCCAAACGAGTTCTCGATCCACCTGGCAAGGATCAAAGATGTGAACCTGCCATGTCATTGTTT CCAAACACTTCATTTTCCATGCCTCAACTTGGCCAAGTTCATTGCCAACCGAGTAATGAATGGCTCAAAATCAATCAAACTTTGGCAAATTATTCTACCA AAGGATTTAATGACTATTGGCTTAGCACTACGAAGACACAGCCGATGAAATACTCGGGCAGAAAATTGCAGAACCACCATCAAAAGCCTTCTTTTTCATC GGCATCAACATCGCCAGGAAAGCTGTTTAGAGGAGTGCGGCAAAGGCACTGGGGAAAATGGGTTGCAGAGATTAGGTTACCAAGAAACCGGACGAGGGTC TGGTTAGGGACCTTCGACACAGCGGAAGATGCTGCTATCGCTTATGACACTGCAGCTTACATGTTACGAGGAGATTATGCGCATTTGAATTTCCCAGATC TTAAGCATCAACTCAAGTCTAGTTCATTGAATAGAACCATAACTGCCCTTCTTGAAGCGAAGCTACAAGCGATATCATCACAAGGCAACAACATTTCTGG TCAAAATAAGCATATTAGTGATCCACCACCACCATCGCCAAGCAAGATTAATGTGCATGCTACAGATGCTACAAAACTCAAAGGTTTGAGCCAAAATACA ACAAGAAAAGAGTGGCAATTTGAGTTAAGAGGCAAAAGTGGAGGTGAAGTGATTGAGAACAAGAAAGGTCAAGAGGTTGTAGCATCGGATATTGATGCTA TTCAGTTAAGTAGAATGCCTTCCTTGGACATGGACATGATCTGGGATGCTCTTTTAGTCTCTGACTCGTGA
AA sequence Show only first row Show all	>Potri.017G055400.1 pacid=42814106 polypeptide=Potri.017G055400.1.p locus=Potri.017G055400 ID=Potri.017G055400.1.v4.1 annot-version=v4.1 MEDQFPKIETFMHKELVAAYCSFHGMATGSKYFGDPTIWGALSGATCRVEDGNSGMKSPSQSSSERLFSSSESSSSADDQVSGTDLIGNIPGFGKQDVVK QDHESCFMSGMNSINALGANSISDQTIKESSIPVNFLEPFPTLKNQAQVPEPPSPSSLSKSPNLTLFLQEPAAASLLHPSKRVLDPPGKDQRCEPAMSLF PNTSFSMPQLGQVHCQPSNEWLKINQTLANYSTKGFNDYWLSTTKTQPMKYSGRKLQNHHQKPSFSSASTSPGKLFRGVRQRHWGKWVAEIRLPRNRTRV WLGTFDTAEDAAIAYDTAAYMLRGDYAHLNFPDLKHQLKSSSLNRTITALLEAKLQAISSQGNNISGQNKHISDPPPPSPSKINVHATDATKLKGLSQNT TRKEWQFELRGKSGGEVIENKKGQEVVASDIDAIQLSRMPSLDMDMIWDALLVSDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13620	AP2_ERF		Integrase-type DNA-binding sup...		Potri.017G055400 [exp]	0	1
AT3G59880			unknown protein		Potri.007G145500 [exp]	5.47	0.8721
					Potri.005G129350 [exp]	7.48	0.8532
AT2G40260	GARP		Homeodomain-like superfamily p...		Potri.005G205900 [exp]	7.74	0.8521
AT2G16750			Protein kinase protein with ad...		Potri.009G134700 [exp]	8.77	0.8455
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Potri.016G129100 [exp]	9.64	0.8611
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Potri.012G001400 [exp]	13.07	0.8396	NAC015
AT4G08570			Heavy metal transport/detoxifi...		Potri.005G167000 [exp]	13.67	0.8239
AT5G24860		ATFPF1, FPF1	ARABIDOPSIS FLOWERING PROMOTIN...		Potri.008G209300 [exp]	16.24	0.8358
					Potri.002G091600 [exp]	17.43	0.8419
AT5G48100		LAC15, TT10, AT...	TRANSPARENT TESTA 10, LACCASE-...		Potri.011G071100 [exp]	18.81	0.8477

Compare expression of checked genes

Potri.017G055400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.