Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01980 323 / 4e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) AT1G62610 112 / 1e-29 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) AT1G63380 110 / 6e-29 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G17845 111 / 8e-29 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G55290 109 / 2e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G46170 104 / 2e-26 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G55310 103 / 3e-26 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 58 / 7e-10 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29150 58 / 1e-09 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 56 / 3e-09 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G327800 [exp] 461 / 3e-166 AT3G01980 323 / 6e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Potri.016G035200 [exp] 114 / 4e-30 AT3G55290 385 / 8e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G200100 [exp] 70 / 6e-14 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 69 / 1e-13 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 67 / 7e-13 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 67 / 1e-12 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 66 / 3e-12 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 63 / 1e-11 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G024300 [exp] 63 / 1e-11 AT1G52340 408 / 6e-145 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041545 [exp] 379 / 8e-134 AT3G01980 346 / 6e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Lus10012548 [exp] 375 / 2e-132 AT3G01980 337 / 2e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Lus10006699 [exp] 119 / 4e-32 AT3G46170 404 / 2e-143 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10007038 [exp] 109 / 3e-28 AT1G63380 357 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10007039 [exp] 103 / 1e-25 AT3G55290 369 / 3e-129 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006698 [exp] 96 / 4e-23 AT1G63380 385 / 5e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10018323 [exp] 71 / 4e-14 AT3G12800 395 / 4e-139 short-chain dehydrogenase-reductase B (.1) Lus10014228 [exp] 69 / 3e-13 AT3G26770 227 / 3e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016354 [exp] 69 / 3e-13 AT1G52340 389 / 4e-137 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019777 [exp] 68 / 4e-13 AT1G52340 391 / 3e-138 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00106 [poplar] [flax] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.017G067332.1 pacid=42812879 polypeptide=Potri.017G067332.1.p locus=Potri.017G067332 ID=Potri.017G067332.1.v4.1 annot-version=v4.1 ATGGGAAGTGGGGCAAATAAAGTGTTGCTTACTTCAAATGGAGATGAGATTTCACAGAATATTGCCTTTCATTTGTTTAAACAAGGATGCAGATTGGTTT TGATGGGAAATGAGAAGGTTTTAAGGAGTATCGGCGAGAAGATAACAGGTGCAGTCAAAGGTGCTTTTCCAGTGGAGGCAGTTGAAATGGATATGGAAGA GGAAAGGGAGGCAAGTTTTGATGAGGCAGTGGATAAGGCATGTATAATTTTGGGAAATTTAGATGCTTTTGTGCATTGCTATACATATGAAGGAAAGACG CAAGAGCCTTTGCAAGTAACAGAAAGTGAGTTTAAAAAGACGGTGAAAATAAATTTTATGTCTCCATGGTTTCTGCTGAAGGCTGTTGGAAAGAAAATGC AGGACTATAATTCAGGAGGCTCCATCGTATTCTTAACCTCAATAATTGGTGCTGAGAGAGGACTATATCAAGGAGCGGTGGCATATGGTTCATGTTCAGC AGGAATACAGCAATTAGTTAGACATTCAGCCATGGAGATAGGGAAGTACAAGATCAGGGTTAATGCAATCGCTCGTGGTTTGCATCTAGAAGATGCATAT CCTGTGTCAGAAGGGAGGGAGAGGGCTGAGAAGTTGGTGAAAGTGGCAGTGCCAATGCAGAGATGGCTTGATGTAAAAAAGGATATTGCATCAACCGTCA TCTATTTAATGAGTGACGGTTCAAGATACATGACTGGGACAACCATTTTTCTTGACGGGGGCCAGTCCTTGGCTAGGCCTAGGATGCGCTCATACATGTA G
AA sequence Show only first row Show all	>Potri.017G067332.1 pacid=42812879 polypeptide=Potri.017G067332.1.p locus=Potri.017G067332 ID=Potri.017G067332.1.v4.1 annot-version=v4.1 MGSGANKVLLTSNGDEISQNIAFHLFKQGCRLVLMGNEKVLRSIGEKITGAVKGAFPVEAVEMDMEEEREASFDEAVDKACIILGNLDAFVHCYTYEGKT QEPLQVTESEFKKTVKINFMSPWFLLKAVGKKMQDYNSGGSIVFLTSIIGAERGLYQGAVAYGSCSAGIQQLVRHSAMEIGKYKIRVNAIARGLHLEDAY PVSEGRERAEKLVKVAVPMQRWLDVKKDIASTVIYLMSDGSRYMTGTTIFLDGGQSLARPRMRSYM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01980			NAD(P)-binding Rossmann-fold s...		Potri.017G067332 [exp]	0	1
AT1G09815		POLD4	polymerase delta 4 (.1)		Potri.013G076400 [exp]	1.00	0.9311
AT4G14860	OFP	ATOFP11	ovate family protein 11 (.1)		Potri.008G153500 [exp]	2.44	0.9254
AT5G07900			Mitochondrial transcription te...		Potri.001G034900 [exp]	5.65	0.8760
					Potri.012G073800 [exp]	7.21	0.8353
AT1G06475			unknown protein		Potri.002G058400 [exp]	8.12	0.8795
AT3G14740			RING/FYVE/PHD zinc finger supe...		Potri.011G103100 [exp]	8.36	0.8817
AT3G20390			endoribonuclease L-PSP family ...		Potri.001G435700 [exp]	11.74	0.8404
AT3G49000			RNA polymerase III subunit RPC...		Potri.015G144900 [exp]	14.07	0.8467
AT2G25710		HCS1	holocarboxylase synthase 1 (.1...		Potri.005G173000 [exp]	15.36	0.7948
AT5G54850			unknown protein		Potri.001G421000 [exp]	15.81	0.8378

Compare expression of checked genes

Potri.017G067332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.