Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	MYB24.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27810 234 / 1e-78 MYB AtMYB3, ATMYB21 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) AT5G40350 227 / 5e-76 MYB ATMYB24 myb domain protein 24 (.1) AT3G01530 222 / 2e-74 MYB ATMYB57 myb domain protein 57 (.1) AT1G68320 194 / 6e-62 MYB BW62C, BW62B, AtMYB62 myb domain protein 62 (.1) AT1G25340 191 / 4e-61 MYB ATMYB116 myb domain protein 116 (.1.2) AT1G48000 184 / 5e-59 MYB ATMYB112 myb domain protein 112 (.1) AT2G47190 182 / 8e-58 MYB AtMYB2 myb domain protein 2 (.1) AT5G49620 178 / 9e-56 MYB ATMYB78 myb domain protein 78 (.1.2) AT3G06490 172 / 5e-53 MYB BOS1, AtMYB108 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) AT3G24310 167 / 1e-51 MYB MYB305, ATMYB71 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G346600 [exp] 321 / 2e-113 AT3G27810 242 / 1e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.008G101400 [exp] 197 / 9e-63 AT3G06490 278 / 2e-92 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Potri.010G149900 [exp] 196 / 9e-63 AT3G06490 281 / 9e-94 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Potri.008G122100 [exp] 192 / 4e-61 AT1G68320 274 / 1e-91 myb domain protein 62 (.1) Potri.012G055600 [exp] 191 / 1e-60 AT1G68320 244 / 1e-79 myb domain protein 62 (.1) Potri.015G046200 [exp] 188 / 3e-59 AT1G25340 241 / 2e-78 myb domain protein 116 (.1.2) Potri.010G123000 [exp] 186 / 1e-58 AT1G68320 268 / 4e-89 myb domain protein 62 (.1) Potri.014G117000 [exp] 171 / 5e-53 AT5G49620 233 / 1e-75 myb domain protein 78 (.1.2) Potri.002G191800 [exp] 169 / 4e-52 AT5G49620 231 / 1e-74 myb domain protein 78 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022259 [exp] 226 / 3e-75 AT3G27810 243 / 3e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Lus10032129 [exp] 222 / 6e-74 AT5G40350 221 / 2e-73 myb domain protein 24 (.1) Lus10014557 [exp] 219 / 9e-73 AT5G40350 224 / 1e-74 myb domain protein 24 (.1) Lus10041435 [exp] 194 / 2e-61 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10037818 [exp] 193 / 5e-61 AT3G06490 273 / 4e-90 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Lus10034338 [exp] 193 / 5e-61 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10017096 [exp] 190 / 6e-61 AT3G06490 259 / 4e-86 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Lus10038062 [exp] 181 / 7e-57 AT2G47190 226 / 1e-73 myb domain protein 2 (.1) Lus10009996 [exp] 179 / 5e-56 AT2G47190 221 / 3e-71 myb domain protein 2 (.1) Lus10009037 [exp] 174 / 1e-54 AT1G68320 231 / 1e-75 myb domain protein 62 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.017G071500.1 pacid=42813271 polypeptide=Potri.017G071500.1.p locus=Potri.017G071500 ID=Potri.017G071500.1.v4.1 annot-version=v4.1 ATGGATAAAACACCATCCAACTCTCAGGATGTTGAAGTAAGAAAAGGGCCATGGACCTTGGAAGAAGACTTGATCTTAACCAACCACATCGCGAACCACG GTGAAGGTGTATGGAACTCGCTTGCTAAAGCTGCAGGTCTGAAACGTACAGGAAAGAGTTGCCGGCTCCGTTGGCTCAACTACTTGCGGCCCGACCTTCG AAGAGGGAATATTACACCTGAAGAACAGCTCTTGATCATGGAACTGCATGCTAAGTGGGGAAACAGGTGGTCGAAGATTGCAAAGCATCTTCCAGGGAGG ACCGACAACGAAATAAAGAATTACTGGAGAACTAGAATCCAGAAGCACATCAAGCAAGCTGAAACATTTGCCGCACAGAGTTCTGAGACGAATGAACATG GGAGCAGTAGCAGCCAAGTTTCCAGCACAACCGAATTAATGGTGTCCAATTGTCTGCCATCCTACCAAGGAGATGTGGAGGCCTTTTCAGGGGGGAATAT ACCTCAAGAACTGAACGAAAATTATTGGAGCATGGAGGATCTGTGGTCCATGCAGTTACTTAATGGCGATTAA
AA sequence Show only first row Show all	>Potri.017G071500.1 pacid=42813271 polypeptide=Potri.017G071500.1.p locus=Potri.017G071500 ID=Potri.017G071500.1.v4.1 annot-version=v4.1 MDKTPSNSQDVEVRKGPWTLEEDLILTNHIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDLRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGR TDNEIKNYWRTRIQKHIKQAETFAAQSSETNEHGSSSSQVSSTTELMVSNCLPSYQGDVEAFSGGNIPQELNENYWSMEDLWSMQLLNGD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27810	MYB	AtMYB3, ATMYB21	ARABIDOPSIS THALIANA MYB DOMA...		Potri.017G071500 [exp]	0	1	MYB24.1
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.008G033500 [exp]	5.83	0.9881
AT3G28470	MYB	TDF1, ATMYB35	DEFECTIVE IN MERISTEM DEVELOPM...		Potri.015G067700 [exp]	9.05	0.9380
					Potri.007G014501 [exp]	11.83	0.9871
					Potri.017G120650 [exp]	13.22	0.9871
AT3G07820			Pectin lyase-like superfamily ...		Potri.019G067133 [exp]	14.49	0.9871
AT3G11840		PUB24	plant U-box 24 (.1)		Potri.001G216300 [exp]	14.73	0.7869
					Potri.010G094250 [exp]	18.70	0.8365
					Potri.007G039601 [exp]	19.44	0.8842
AT3G07820			Pectin lyase-like superfamily ...		Potri.019G067100 [exp]	19.62	0.9871
AT3G11840		PUB24	plant U-box 24 (.1)		Potri.009G016100 [exp]	21.90	0.9870

Compare expression of checked genes

Potri.017G071500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.