Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-MYB94.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47600 318 / 3e-108 MYB ATMYB94, AtMYBCP70 myb domain protein 94 (.1) AT5G62470 306 / 2e-103 MYB ATMYB96, mybcov1 myb domain protein 96 (.1.2) AT3G28910 300 / 4e-101 MYB AtMYB30, MYB30 myb domain protein 30 (.1) AT1G74650 292 / 5e-98 MYB ATMYB31 AtY13 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 31, myb domain protein 31 (.1) AT1G08810 261 / 2e-86 MYB ATMYB60 myb domain protein 60 (.1.2) AT5G15310 199 / 7e-62 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT3G61250 197 / 4e-61 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT3G01140 193 / 9e-59 MYB NOK, ATMYB106 NOECK, myb domain protein 106 (.1) AT2G31180 189 / 9e-59 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT3G23250 189 / 2e-58 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G126700 [exp] 486 / 5e-174 AT3G28910 310 / 2e-104 myb domain protein 30 (.1) Potri.013G067500 [exp] 280 / 3e-93 AT1G08810 293 / 8e-99 myb domain protein 60 (.1.2) Potri.019G045900 [exp] 276 / 8e-92 AT1G08810 298 / 5e-101 myb domain protein 60 (.1.2) Potri.017G086300 [exp] 202 / 4e-62 AT5G15310 343 / 6e-117 myb domain protein 16 (.1.2) Potri.012G140700 [exp] 197 / 2e-61 AT3G61250 276 / 1e-92 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.002G157600 [exp] 194 / 7e-60 AT3G61250 363 / 3e-126 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.015G143500 [exp] 191 / 6e-59 AT3G61250 278 / 2e-93 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.010G165700 [exp] 192 / 2e-58 AT3G01140 302 / 3e-100 NOECK, myb domain protein 106 (.1) Potri.005G224100 [exp] 187 / 9e-58 AT3G23250 255 / 1e-84 myb domain protein 15 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002056 [exp] 297 / 8e-100 AT5G62470 320 / 6e-109 myb domain protein 96 (.1.2) Lus10015369 [exp] 289 / 1e-96 AT3G28910 293 / 2e-98 myb domain protein 30 (.1) Lus10024218 [exp] 284 / 2e-95 AT3G47600 305 / 2e-103 myb domain protein 94 (.1) Lus10008616 [exp] 268 / 1e-87 AT3G47600 322 / 2e-108 myb domain protein 94 (.1) Lus10009522 [exp] 265 / 1e-87 AT1G08810 284 / 9e-96 myb domain protein 60 (.1.2) Lus10030677 [exp] 262 / 2e-86 AT3G47600 293 / 1e-98 myb domain protein 94 (.1) Lus10020343 [exp] 251 / 5e-82 AT1G08810 286 / 1e-96 myb domain protein 60 (.1.2) Lus10005245 [exp] 245 / 8e-80 AT3G47600 289 / 6e-97 myb domain protein 94 (.1) Lus10041145 [exp] 192 / 4e-60 AT3G23250 237 / 3e-78 myb domain protein 15 (.1.2) Lus10033003 [exp] 196 / 7e-60 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.017G082500.1 pacid=42813634 polypeptide=Potri.017G082500.1.p locus=Potri.017G082500 ID=Potri.017G082500.1.v4.1 annot-version=v4.1 ATGGGCAGACCACCTTGCTGTGATAAGATAGGAGTGAAAAAAGGACCATGGACTCCTGAGGAAGATATCATCTTGGTATCATATATTCAAGAACATGGTC CTGGGAATTGGAGAGCTGTGCCAACTAGTACAGGACTGCTTAGATGCAGTAAGAGTTGCAGATTGAGATGGACTAATTACCTAAGGCCAGGGATCAAACG TGGTAATTTTACCGATCACGAGGAGAAGATGATAATCCACCTCCAAGCCCTTCTAGGCAACAGATGGGCTGCCATAGCTTCATACCTCCCTCAGAGAACA GATAATGACATTAAAAACTTTTGGAACACACATTTGAAGAAGAAGTTGAGAAAGCTTCAAGCAGGGCAAGAAGGTCAGTCTAGAGATGGGTTATCATCAA CAGGTTCACAGCAAATTTCTAGAGGCCAATGGGAGAGAAGGCTTCAAACTGATATCAACATGGCTAGGCAAGCCCTATGCGAGGCCTTGTCTCCCGGTAA ACCAAGCAGCTTGTTAACCGGGTTGAAACCCTCTTGTGGGTATGAAAAACCAGCTACAGAACCAATCTATGCATCAAGCACTGAAAATATATCCAGATTG CTCAAAGGATGGATGATAAGTGGGCCTAAGCAGTCGCTAAAAAATTCAACTACTCAGAATTCCTTCATCGATACGGCTGGAGCTGATTCACTGTCTAGTG AAGGGACTCCTGATAAAGCAGACAAAAATGGCACTGGATTATCACAGGCATTTGAATCACTCTTTGGTTTTGACTCTTTCGACTCTTCAAATTCAGATTT CTCTCAATCCATGTCGCCTGATACTGGCCTTTTCCAAGACGAAAGTAAGCCAAATTCCAGTGCTCAAGTGCCACTGTCATTGATTGAGAGGTGGCTATTT GATGAAGGAGCCATGCAAGGGAAAGATTACATAAACGAAGTCACAATAGATGAAGATAATCTCTTCTAG
AA sequence Show only first row Show all	>Potri.017G082500.1 pacid=42813634 polypeptide=Potri.017G082500.1.p locus=Potri.017G082500 ID=Potri.017G082500.1.v4.1 annot-version=v4.1 MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRAVPTSTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRT DNDIKNFWNTHLKKKLRKLQAGQEGQSRDGLSSTGSQQISRGQWERRLQTDINMARQALCEALSPGKPSSLLTGLKPSCGYEKPATEPIYASSTENISRL LKGWMISGPKQSLKNSTTQNSFIDTAGADSLSSEGTPDKADKNGTGLSQAFESLFGFDSFDSSNSDFSQSMSPDTGLFQDESKPNSSAQVPLSLIERWLF DEGAMQGKDYINEVTIDEDNLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Potri.017G082500 [exp]	0	1	Pt-MYB94.1
AT1G11340			S-locus lectin protein kinase ...		Potri.004G028701 [exp]	2.00	0.9260
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111600 [exp]	2.23	0.9622
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Potri.010G078300 [exp]	3.31	0.9151	Pt-IAA14.2
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.009G069100 [exp]	5.47	0.9256
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.008G062400 [exp]	6.00	0.8999
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125151 [exp]	8.66	0.9287
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.009G051200 [exp]	10.58	0.9210
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Potri.018G111900 [exp]	13.26	0.9162
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Potri.018G036700 [exp]	14.28	0.9099
AT4G23290		CRK21	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111751 [exp]	15.87	0.9039

Compare expression of checked genes

Potri.017G082500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.