Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15450 1600 / 0 AtCLPB3, APG6, CLPB3, CLPB-P CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) AT2G25140 1274 / 0 HSP98.7, CLPB-M, CLPB4 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) AT1G74310 838 / 0 HOT1, ATHSP101 heat shock protein 101 (.1) AT5G50920 688 / 0 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) AT3G48870 682 / 0 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2) AT4G14670 543 / 0 CLPB2 casein lytic proteinase B2 (.1) AT5G51070 337 / 2e-100 SAG15, CLPD, ERD1 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) AT3G45450 163 / 4e-44 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30350 75 / 2e-13 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57710 65 / 3e-10 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G124800 [exp] 1738 / 0 AT5G15450 1567 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.006G262700 [exp] 1282 / 0 AT2G25140 1361 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Potri.015G057000 [exp] 843 / 0 AT1G74310 1567 / 0.0 heat shock protein 101 (.1) Potri.015G056900 [exp] 842 / 0 AT1G74310 1566 / 0.0 heat shock protein 101 (.1) Potri.012G105900 [exp] 678 / 0 AT5G50920 1505 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.015G105100 [exp] 674 / 0 AT5G50920 1508 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.012G112000 [exp] 335 / 5e-100 AT5G51070 1328 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.015G110000 [exp] 333 / 5e-99 AT5G51070 1282 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.005G197400 [exp] 320 / 8e-99 AT5G50920 583 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030705 [exp] 1630 / 0 AT5G15450 1619 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Lus10013191 [exp] 1610 / 0 AT5G15450 1605 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Lus10041018 [exp] 1301 / 0 AT2G25140 1511 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Lus10021159 [exp] 808 / 0 AT1G74310 1421 / 0.0 heat shock protein 101 (.1) Lus10040528 [exp] 750 / 0 AT1G74310 1496 / 0.0 heat shock protein 101 (.1) Lus10032544 [exp] 657 / 0 AT5G50920 1271 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10016723 [exp] 657 / 0 AT5G50920 1526 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10036017 [exp] 657 / 0 AT5G50920 1542 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10013459 [exp] 570 / 0 AT4G31890 703 / 0.0 ARM repeat superfamily protein (.1.2) Lus10040527 [exp] 464 / 3e-153 AT1G74310 906 / 0.0 heat shock protein 101 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0023 [poplar] [flax] PF02861 [poplar] [flax] Clp_N Clp amino terminal domain, pathogenicity island component CL0023 [poplar] [flax] P-loop_NTPase PF07728 [poplar] [flax] AAA_5 AAA domain (dynein-related subfamily) CL0671 [poplar] [flax] AAA_lid PF10431 [poplar] [flax] ClpB_D2-small C-terminal, D2-small domain, of ClpB protein
Representative CDS sequence Show only first row Show all	>Potri.017G090600.1 pacid=42813281 polypeptide=Potri.017G090600.1.p locus=Potri.017G090600 ID=Potri.017G090600.1.v4.1 annot-version=v4.1 ATGGCAACCACCGCTACAGCGGCGTCGTTTACCGGAGTGAGTCTGTGTCCTTCCTCATCATCTCCCCTTTCACATTCAGCTTCCATTAGGAATGCTTTGT TGCCTCAAAAGTCTCTTATTAGTTTCGCTGGAAGGCGGACTTCTGTGAAGTCGCTTGAGTTGAAGAGAAATGGTGCCCGTTTTCAGAGGACTAGTAGACC CACTTCCTTTGTTGTTAGATGTGATGCTTCTAATGGAAGGATTACACAGCAAGAATTTACAGACATGGCATGGCAAGGAATTGTATCTTCCCCAGATGTG GCGAAAGAGAACAAACATCAGATAGTGGAGACCGAGCATTTGATGAAAGTCCTCTTGGAGCAAAAGAATGGCCTTGCTCGCCGTATCTTTTCCAAGGTTG GGGTTGATAATACTCGTCTTCTTGAAGCCACCGATAAATTTATCCAACGCCAGCCCAAGGTTCTAAGCGATTCTGCTGGTTCAATGTTGGGACGTGACTT GGAGGCCCTGATCCAACGAGCCAGAGAATACAAGAAAGAGTATGGGGATTCATTTGTTTCTGTTGAGCATTTGGTTCTTGCATTCACTCAAGATCAACGA TTTGGGAAGCAATTATTTAAAGATTTTCAAATATCTCTACAAACTCTGAAACCTGCAATAGAATCCATAAGGGGACGCCAATCAGTTATAGACCAAGATC CTGAAGGAAAGTATGAAGCACTGGAGAAGTATGGAAAGGATTTGACAGCCATGGCAAAAGCAGGAAAGCTTGACCCAGTTATTGGCAGGGATGATGAAAT CCGTAGATGCATCCAGATTCTCTCCAGGAGAACAAAAAACAATCCAGTGCTAATTGGTGAACCAGGTGTGGGGAAAACTGCAATTTCTGAAGGGCTTGCC CAGAGAATTGTGGAAGGGGATGTTCCTCAAGCTTTGATGAACCGCAAGCTAATATCCCTTGACATGGGTGCACTCATTGCTGGGGCAAAATATCGAGGGG AATTTGAGGATAGATTGAAGGCTGTACTTAGGGAAGTCACGGATTCAGATGGTCAGATTATCCTTTTCATTGATGAGATTCACACAGTGGTTGGTGCTGG TGCCACAAATGGAGCGATGGATGCGGGCAATCTCTTGAAGCCTATGCTTGGCAGAGGAGAGTTGCGCTGCATTGGTGCAACAACACTGGATGAGTATCGT AAGTATATTGAGAAAGATCCTGCATTGGAGCGTCGTTTCCAGCAAGTTTTTGTTGATCAACCTACAGTAGCGGATACAGTATCTATACTCCGGGGACTGC GTGAAAGATATGAGCTGCATCATGGAGTCCGAATTTCTGACAGTGCACTTGTGGAAGCAGCGATTCTGTCTGATCGTTACATCAGTGGAAGATTTTTACC TGACAAAGCTATTGATTTAGTTGATGAAGCAGCTGCAAAACTGAAAATGGAAATTACTTCAAAGCCTACTGCCCTTGATGGAATCAACCGTTCAGTATTA AAGCTGGAGATGGAGAGGTTATCTCTTAAAAATGATACGGATAAAGCTTCAAAAGATAGGCTGAGCCGCCTTGATGCTGAGTTGTCCCTGTTAAAAAAGA AACAAGCTGAGCTGACAGAGCAATGGGAGCACGAGAAGTCTGTCATGACACGCATTCAGTCAATTAAGGAAGAGATTGACAGGGTCAATCTTGAGATTCA GCAGGCTGAGCGAGAGTATGATTTAAATCGTGCTGCTGAATTGAAGTACGGGAGCCTGAATTCTTTGCAACGCCAACTTGGAAGTGCTGAAAAGGAGTTG GATGAGTACATGAAGTCAGGAAAGTCCATGCTGAGAGAAGAAGTTACAGGTGATGACATTGCTGAAATTGTTAGCAAGTGGACTGGCATCCCTGTTTCCA AGCTTAAACAATCTGAGAAGGAGAAGCTATTGCATTTGGAAGAAGAGCTGCATAAACGTGTGGTGGGTCAAGACCCTGCAGTGAAAGCAGTAGCTGAGGC CATTCAGCGATCTCGTGCTGGTCTCTCTGATCCTCGCCGTCCAATTGCTAGTTTCATGTTCATGGGCCCCACTGGTGTTGGAAAAACAGAACTAGCTAAA GCCCTAGCTTCCTATATGTTCAATACTGAAGAAGCCCTTGTACGAATTGATATGAGCGAATACATGGAAAAGCATGCAGTTTCACGATTAATTGGCGCCC CACCTGGTTATGTAGGGTATGAGGAAGGGGGCCAGTTGACAGAGACAGTTCGTAGGAGGCCATATGCAGTTATTCTCTTTGATGAGATAGAAAAGGCTCA TTCTGATGTATTTAATATCTTCCTTCAGATTTTGGATGATGGTAGGGTGACTGATTCACAAGGTCGCACAGTCAGTTTCACAAACACTGTCATCATTATG ACTTCAAATGTGGGTTCACAATACATACTTGACACTGATGATGACTTGCCAAAGGAGGTAGCTTATGAAACAATTAAGAGGAGGGTAATGGATGCTGCTA GATCAGTCTTCCGACCTGAGTTCATGAACAGGGTTGATGAGTACATAGTTTTCCAGCCTCTGGATCGTGATCAAATAAACAGCATTGTCAGGTTACAGCT TGAACGTGTCCAGCAAAGGCTTGCAGACCGGAAGATAAGAGTATTGGTTACTGATGCAGCTGGAGACCTTCTTGGGACTCTTGGATACGATCCCAACTAT GGTGCTAGGCCAGTCAAAAGGGTGATTCAGCAGTATGTTGAAAACGAACTTGCCAAGGGTATCTTGAGAGGGGAATTCAAGGATGAGGATTCTGTCTTAA TAGACACCGAGGTTACAGCATTTGCTAATGGGCAGCTCCCCCAGCAAAAGCTAGTTTTCAAGCGTCTTCAAACTAGTGAAGAAAAAGCAGCTGCAGAAAA TCGAGTTTTCTCACGAACTGTCTGA
AA sequence Show only first row Show all	>Potri.017G090600.1 pacid=42813281 polypeptide=Potri.017G090600.1.p locus=Potri.017G090600 ID=Potri.017G090600.1.v4.1 annot-version=v4.1 MATTATAASFTGVSLCPSSSSPLSHSASIRNALLPQKSLISFAGRRTSVKSLELKRNGARFQRTSRPTSFVVRCDASNGRITQQEFTDMAWQGIVSSPDV AKENKHQIVETEHLMKVLLEQKNGLARRIFSKVGVDNTRLLEATDKFIQRQPKVLSDSAGSMLGRDLEALIQRAREYKKEYGDSFVSVEHLVLAFTQDQR FGKQLFKDFQISLQTLKPAIESIRGRQSVIDQDPEGKYEALEKYGKDLTAMAKAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLA QRIVEGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLREVTDSDGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYR KYIEKDPALERRFQQVFVDQPTVADTVSILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPTALDGINRSVL KLEMERLSLKNDTDKASKDRLSRLDAELSLLKKKQAELTEQWEHEKSVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNSLQRQLGSAEKEL DEYMKSGKSMLREEVTGDDIAEIVSKWTGIPVSKLKQSEKEKLLHLEEELHKRVVGQDPAVKAVAEAIQRSRAGLSDPRRPIASFMFMGPTGVGKTELAK ALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTETVRRRPYAVILFDEIEKAHSDVFNIFLQILDDGRVTDSQGRTVSFTNTVIIM TSNVGSQYILDTDDDLPKEVAYETIKRRVMDAARSVFRPEFMNRVDEYIVFQPLDRDQINSIVRLQLERVQQRLADRKIRVLVTDAAGDLLGTLGYDPNY GARPVKRVIQQYVENELAKGILRGEFKDEDSVLIDTEVTAFANGQLPQQKLVFKRLQTSEEKAAAENRVFSRTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15450		AtCLPB3, APG6, ...	CASEIN LYTIC PROTEINASE B-P, A...		Potri.017G090600 [exp]	0	1
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Potri.004G224400 [exp]	1.00	0.9725	Pt-HSC70.1
AT1G02020			nitroreductase family protein ...		Potri.002G146100 [exp]	1.41	0.9576
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Potri.003G222400 [exp]	2.44	0.9392	Pt-LEN1.1
AT3G61770			Acid phosphatase/vanadium-depe...		Potri.002G171300 [exp]	3.16	0.9121
AT2G28000		Cpn60alpha1, SL...	SCHLEPPERLESS, chaperonin-60al...		Potri.004G213400 [exp]	4.00	0.9204	SLP.2
AT3G15350			Core-2/I-branching beta-1,6-N-...		Potri.001G399500 [exp]	4.89	0.8805
AT5G20720		CHCPN10, ATCPN2...	CHLOROPLAST CHAPERONIN 10, cha...		Potri.006G138600 [exp]	6.48	0.8833	CPN21.1
AT5G67590		FRO1	FROSTBITE1, NADH-ubiquinone ox...		Potri.002G117800 [exp]	11.40	0.8674
AT4G01200			Calcium-dependent lipid-bindin...		Potri.002G166400 [exp]	11.61	0.8804
AT3G48070			RING/U-box superfamily protein...		Potri.012G074500 [exp]	11.61	0.8491

Compare expression of checked genes

Potri.017G090600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.