Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30210 198 / 1e-63 MYB ATMYB121 myb domain protein 121 (.1) AT3G24310 181 / 1e-56 MYB MYB305, ATMYB71 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) AT4G13480 177 / 2e-55 MYB ATMYB79 myb domain protein 79 (.1) AT3G46130 156 / 2e-47 MYB PFG3, ATMYB111 ATMYB48, ATMYB48-3, ATMYB48-1, ATMYB48-2 myb domain protein 48 (.1.2.3.4) AT5G59780 154 / 9e-47 MYB ATMYB59, ATMYB59-1, ATMYB59-3, ATMYB59-2 myb domain protein 59 (.1.2.3) AT1G48000 154 / 1e-46 MYB ATMYB112 myb domain protein 112 (.1) AT3G01530 150 / 2e-45 MYB ATMYB57 myb domain protein 57 (.1) AT3G02940 152 / 4e-45 MYB ATMYB107 myb domain protein 107 (.1) AT3G27810 149 / 6e-45 MYB AtMYB3, ATMYB21 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) AT1G68320 150 / 9e-45 MYB BW62C, BW62B, AtMYB62 myb domain protein 62 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G118000 [exp] 296 / 6e-103 AT3G30210 209 / 1e-67 myb domain protein 121 (.1) Potri.004G115600 [exp] 293 / 1e-101 AT3G30210 227 / 9e-75 myb domain protein 121 (.1) Potri.008G173400 [exp] 188 / 1e-59 AT3G24310 258 / 2e-86 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Potri.010G064000 [exp] 184 / 4e-58 AT3G24310 255 / 4e-85 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Potri.009G027300 [exp] 153 / 2e-46 AT3G46130 279 / 3e-95 myb domain protein 48 (.1.2.3.4) Potri.001G235500 [exp] 152 / 7e-46 AT3G46130 276 / 3e-94 myb domain protein 48 (.1.2.3.4) Potri.001G346600 [exp] 150 / 7e-46 AT3G27810 242 / 1e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.010G149900 [exp] 151 / 9e-45 AT3G06490 281 / 9e-94 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Potri.005G074500 [exp] 151 / 2e-44 AT1G34670 290 / 1e-96 myb domain protein 93 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005079 [exp] 199 / 2e-64 AT3G30210 199 / 1e-63 myb domain protein 121 (.1) Lus10034372 [exp] 197 / 1e-63 AT3G30210 195 / 5e-62 myb domain protein 121 (.1) Lus10023711 [exp] 187 / 1e-58 AT3G24310 247 / 2e-81 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Lus10014453 [exp] 185 / 6e-58 AT3G24310 240 / 1e-78 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Lus10005886 [exp] 155 / 6e-47 AT3G46130 265 / 1e-89 myb domain protein 48 (.1.2.3.4) Lus10041435 [exp] 149 / 9e-44 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10022259 [exp] 147 / 1e-43 AT3G27810 243 / 3e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Lus10040063 [exp] 151 / 2e-43 AT2G32460 229 / 1e-69 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10038062 [exp] 147 / 2e-43 AT2G47190 226 / 1e-73 myb domain protein 2 (.1) Lus10033473 [exp] 146 / 2e-43 AT2G16720 249 / 2e-83 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.017G099500.2 pacid=42814214 polypeptide=Potri.017G099500.2.p locus=Potri.017G099500 ID=Potri.017G099500.2.v4.1 annot-version=v4.1 ATGGTAGCAAGGATGGGTTGGGGAATTCCTGAGAAAGGGTGGAGGAAAGGTCCTTGGACTCCTGAAGAGGATAAATTGCTTATTGAATACGTGAGCTTGC ATGGCGAGGGGAGATGGAGTTCTGTTTCTAGGTGCCCAGGTTTGAACAGGAGTGGGAAGAGCTGCAGGCTGAGGTGGGTGAATTACCTTAGGCCGGGACT TAAGAGAGGCCAGATAACACCTCAAGAGGAAGGCATCATCATTGAACTGCATGCTCTCCTGGGAAACAAGTGGTCAACTATTGCTAGATACTTGCCTGGA AGAACAGACAATGAGATAAAGAACTATTGGAGAACACATTCCAAAAAGAAAGAGAAATCCTCTCAGAAACAATTAGAAAAGAGAAAAGCTCAGATCCTCA AACAGGAAGAGGAACACCAGCAACACCTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTAGAAGCTGGTGACATGAACATGGTCAACACCATTGCTCA TGAAAAGATGCATGGAGCACCAGAGATGATGTACCCCACTGTGGAGGATCAATGCTTACCTGTGATGTCTCAAGATGTTGTATCTTGGGCAGATTCTGTG GTAGAGGATTATTATAGACTATGGGGTGGCTTTTGGAACTTAGATGATCATCCATAG
AA sequence Show only first row Show all	>Potri.017G099500.2 pacid=42814214 polypeptide=Potri.017G099500.2.p locus=Potri.017G099500 ID=Potri.017G099500.2.v4.1 annot-version=v4.1 MVARMGWGIPEKGWRKGPWTPEEDKLLIEYVSLHGEGRWSSVSRCPGLNRSGKSCRLRWVNYLRPGLKRGQITPQEEGIIIELHALLGNKWSTIARYLPG RTDNEIKNYWRTHSKKKEKSSQKQLEKRKAQILKQEEEHQQHLQQQQQQQQQQLEAGDMNMVNTIAHEKMHGAPEMMYPTVEDQCLPVMSQDVVSWADSV VEDYYRLWGGFWNLDDHP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G30210	MYB	ATMYB121	myb domain protein 121 (.1)		Potri.017G099500 [exp]	0	1
AT2G47810	CCAAT	NF-YB5	"nuclear factor Y, subunit B5"...		Potri.014G132600 [exp]	1.00	0.9734
AT2G24130			Leucine-rich receptor-like pro...		Potri.006G181200 [exp]	2.82	0.9527
AT2G46150			Late embryogenesis abundant (L...		Potri.002G165100 [exp]	3.46	0.9496
AT5G02070			Protein kinase family protein ...		Potri.005G021300 [exp]	3.46	0.9475
AT1G16310			Cation efflux family protein (...		Potri.010G172800 [exp]	3.74	0.9136
AT3G24310	MYB	MYB305, ATMYB71	MYB DOMAIN PROTEIN 71, myb dom...		Potri.008G173400 [exp]	4.89	0.9410	Pt-MYB305.1
AT2G48140		EDA4	embryo sac development arrest ...		Potri.008G155200 [exp]	5.47	0.9269
AT3G22060			Receptor-like protein kinase-r...		Potri.017G040132 [exp]	6.32	0.9330
					Potri.002G144101 [exp]	6.63	0.8908
					Potri.017G080900 [exp]	6.70	0.9438

Compare expression of checked genes

Potri.017G099500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.