Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01570 701 / 0 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G14920 697 / 0 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT3G03450 696 / 0 GRAS RGL2 RGA-like 2 (.1) AT1G66350 686 / 0 GRAS RGL1 RGA-like 1 (.1) AT5G17490 556 / 0 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT5G48150 249 / 2e-75 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G50600 248 / 6e-74 GRAS SCL5 scarecrow-like 5 (.1) AT2G04890 237 / 1e-71 GRAS SCL21 SCARECROW-like 21 (.1) AT3G54220 235 / 2e-68 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT1G50420 230 / 2e-68 GRAS SCL-3, SCL3 scarecrow-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G089800 [exp] 1072 / 0 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 763 / 0 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 758 / 0 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.001G326000 [exp] 306 / 3e-95 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.012G093900 [exp] 256 / 5e-78 AT1G66350 257 / 2e-79 RGA-like 1 (.1) Potri.005G095100 [exp] 254 / 5e-77 AT1G66350 252 / 3e-77 RGA-like 1 (.1) Potri.014G164400 [exp] 254 / 1e-76 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.015G091200 [exp] 252 / 3e-76 AT1G66350 256 / 4e-79 RGA-like 1 (.1) Potri.001G361700 [exp] 249 / 7e-75 AT1G50600 637 / 0.0 scarecrow-like 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017626 [exp] 822 / 0 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10033583 [exp] 809 / 0 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10028511 [exp] 432 / 2e-145 AT5G17490 527 / 0.0 RGA-like protein 3 (.1) Lus10017758 [exp] 399 / 5e-132 AT2G01570 454 / 4e-155 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10009133 [exp] 332 / 2e-111 AT1G14920 286 / 3e-95 RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) Lus10041540 [exp] 320 / 5e-100 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 318 / 1e-98 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10009134 [exp] 298 / 2e-95 AT2G01570 248 / 2e-95 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10012323 [exp] 255 / 2e-77 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10022418 [exp] 252 / 4e-77 AT1G50420 592 / 0.0 scarecrow-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family CL0063 [poplar] [flax] PF12041 [poplar] [flax] DELLA Transcriptional regulator DELLA protein N terminal
Representative CDS sequence Show only first row Show all	>Potri.017G125200.1 pacid=42813262 polypeptide=Potri.017G125200.1.p locus=Potri.017G125200 ID=Potri.017G125200.1.v4.1 annot-version=v4.1 ATGAAGAGAGATCATCAAGAAACCATTGGTGGTGCTGGGAATTCTATTGGCAACAAAGCTGAATCTTCTTCTTCGTCAATGGCAACCGGGAAAGGGAAAT TATGGGTTGAAGATGATCAAGATGCAGGTGGCATGGATGAATTACTTGCTGTTTTGGGTTACAAAATTAAGTCTTCGGAAATGGCTGATGTAGCTCAAAA ACTTGAACAACTAGAGATGGTTTTGGGTTCAGAGGATGGAATCTCTCATCTTGCTTCTGATACTGTCCATTACAACCCTTCAGATCTCTCTGGTTGGGTT CAAAGCATGCTTTCTGAGCTCAACAATCTACCTTCTTCTGATCTTGATTCATCTACTCTTCTTTCCAATAATCAAGATTCAAATCCTTCCACAATGACCT CTTTAGATTTCCCCAATAATTCTCAATCTAAAGCATTTGTTGACGACTCTGAATATGATCTCAGAGCAATTCCCGGCGTAGCTGCCTATCCTCAACAAGA ATTCGATAAGAGCAACGATAGGAAGCGAATGAAGCTCACCCTAGTTGGGTCCAATACCGCGCCGACGCTAGCTGTGAATTCCTTACAATCTTCCAACTCG TCTTGTACTCCTTCTTCTCCACAAGCAATAATGGCAGTTTCAGGTACTTTATCGGAGCCCACGAGACCTGTAGTCCTGATTGACTCACAGGAAACTGGGG TCCGTCTTGTTCATACCCTTTTGGCTTGTGCAGAGGCAATACAGCAAGAAAATCTTAAACTTGCTGATGCCCTTGTTAAGCATATTGGAGTACTTGCAGC ATCTCAAGCTGGTGCTATGAGAAAGGTTGCCACGTACTTTGCTGAAGCTTTAGCTCGTCGAATTTACAAGATTTTCCCTCAAGATCACTGTCTTGATTCT TCATATTCAGATACGTTAGAGATGCATTTCTACGAGACTTGCCCTTATCTCAAATTCGCACATTTTACTGCCAATCAAGCCATTCTTGAAGCTTTCGCTA ATGCAAGTCGAGTCCACGTTATCGATTTTGGCTTAAAACAAGGAATGCAATGGCCGGCTTTAATGCAAGCGCTTGCATTAAGGCCTGGCGGTCCGCCAGC ATTTCGGCTGACGGGAATTGGACCGCCGCAGCCTGATAATACTGATGCTTTGCAGCAAGTGGGGTGGAAGCTAGCACAATTGGCTCAAACTATTGGGGTA GAATTCGAGTTTCGTGGGTTCGTAGCAAGTTCTTTGGCAGATCTTGAGGCGGAGATGCTTGACCTCCGTCCTCCAGAGGTGGAGGCAGTGGCTGTTAACT CAGTTTTTGAGTTGCATCGCTTGTTGGATCGGCCGGGTGGCATCGATAAGGTTCTTGGGTCTATTAAGGCCATGAGGCCTAAAATCGTGACGATTGTTGA GCAAGAAGCAAACCACAACGGTCCGGTTTTTCTAGACCGGTTCACCGAGGCCTTGCATTACTATTCAAGCTTGTTTGACTCACTCGAAGGGTCTGGGGTG ACTCCGACGAGTCAGGACCTGGTTATGTCTGAGTTGTACTTGGGGAGGCAGATATGTAATGTGGTGGCCTGCGAAGGGGCTGACCGAGTTGAGCGACATG AAACGTTGGCTCAGTGGAGAACTCGGTTCGATTCGGCTGGGTTCGACCCGGTTCATCTCGGGTCGAATGCCTTTAAACAAGCTAGCATGTTGTTGGCCCT CTTTGCTGGGGGTGATGGGTATAGGGTAGAGGAGAACAACGGGTGTCTCATGCTTGGGTGGCATACTAGGCCACTAATTGCCACCTCCGCATGGCAGCTT GCCGCAGGAGATTCAAGATTACGAGTAAACTCAGCTGAGTTCGAGCTACCGAGTCAATGA
AA sequence Show only first row Show all	>Potri.017G125200.1 pacid=42813262 polypeptide=Potri.017G125200.1.p locus=Potri.017G125200 ID=Potri.017G125200.1.v4.1 annot-version=v4.1 MKRDHQETIGGAGNSIGNKAESSSSSMATGKGKLWVEDDQDAGGMDELLAVLGYKIKSSEMADVAQKLEQLEMVLGSEDGISHLASDTVHYNPSDLSGWV QSMLSELNNLPSSDLDSSTLLSNNQDSNPSTMTSLDFPNNSQSKAFVDDSEYDLRAIPGVAAYPQQEFDKSNDRKRMKLTLVGSNTAPTLAVNSLQSSNS SCTPSSPQAIMAVSGTLSEPTRPVVLIDSQETGVRLVHTLLACAEAIQQENLKLADALVKHIGVLAASQAGAMRKVATYFAEALARRIYKIFPQDHCLDS SYSDTLEMHFYETCPYLKFAHFTANQAILEAFANASRVHVIDFGLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAQTIGV EFEFRGFVASSLADLEAEMLDLRPPEVEAVAVNSVFELHRLLDRPGGIDKVLGSIKAMRPKIVTIVEQEANHNGPVFLDRFTEALHYYSSLFDSLEGSGV TPTSQDLVMSELYLGRQICNVVACEGADRVERHETLAQWRTRFDSAGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQL AAGDSRLRVNSAEFELPSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.017G125200 [exp]	0	1
AT2G33570			Domain of unknown function (DU...		Potri.005G258900 [exp]	9.79	0.7463
AT1G67750			Pectate lyase family protein (...		Potri.008G182200 [exp]	10.48	0.7367
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Potri.006G086100 [exp]	10.67	0.7624	EXPA3.1,PtEXPA16
AT5G06470			Glutaredoxin family protein (....		Potri.016G067700 [exp]	17.54	0.7401
AT4G34760			SAUR-like auxin-responsive pro...		Potri.004G164400 [exp]	19.28	0.7315	SAUR29
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Potri.006G228200 [exp]	20.78	0.7590
AT4G36195			Serine carboxypeptidase S28 fa...		Potri.007G015400 [exp]	21.63	0.6859
AT1G75620			glyoxal oxidase-related protei...		Potri.002G027000 [exp]	31.81	0.6440
AT5G48485		DIR1	DEFECTIVE IN INDUCED RESISTANC...		Potri.002G251000 [exp]	34.98	0.6889
AT1G60870		MEE9	maternal effect embryo arrest ...		Potri.016G004300 [exp]	39.10	0.6890

Compare expression of checked genes

Potri.017G125200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.