Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66370 184 / 3e-57 MYB ATMYB113 myb domain protein 113 (.1) AT1G66380 167 / 4e-52 MYB ATMYB114 myb domain protein 114 (.1) AT1G56650 169 / 1e-51 MYB ATMYB75, SIAA1, PAP1 SUC-INDUCED ANTHOCYANIN ACCUMULATION 1, MYELOBLASTOSIS PROTEIN 75, MYB DOMAIN PROTEIN 75, production of anthocyanin pigment 1 (.1) AT1G66390 166 / 3e-50 MYB PAP2, AtMYB90 PRODUCTION OF ANTHOCYANIN PIGMENT 2, myb domain protein 90 (.1) AT3G13540 156 / 1e-46 MYB ATMYB5, ATM2 myb domain protein 5 (.1) AT5G35550 147 / 1e-42 MYB ATTT2, TT2, AtMYB123 TRANSPARENT TESTA 2, MYB DOMAIN PROTEIN 123, Duplicated homeodomain-like superfamily protein (.1) AT1G22640 144 / 1e-41 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT3G02940 144 / 4e-41 MYB ATMYB107 myb domain protein 107 (.1) AT5G16770 144 / 5e-41 MYB ATMYB9 myb domain protein 9 (.1.2) AT5G52600 140 / 5e-41 MYB AtMYB82 myb domain protein 82 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G125800 [exp] 347 / 3e-121 AT1G66370 190 / 5e-60 myb domain protein 113 (.1) Potri.017G125700 [exp] 345 / 3e-120 AT1G66370 202 / 1e-64 myb domain protein 113 (.1) Potri.017G125900 [exp] 332 / 3e-115 AT1G66370 191 / 1e-60 myb domain protein 113 (.1) Potri.017G126000 [exp] 306 / 9e-105 AT1G66370 188 / 5e-59 myb domain protein 113 (.1) Potri.003G079100 [exp] 156 / 2e-47 AT3G13540 168 / 1e-52 myb domain protein 5 (.1) Potri.003G219900 [exp] 157 / 5e-46 AT3G13540 243 / 1e-79 myb domain protein 5 (.1) Potri.001G005100 [exp] 155 / 2e-45 AT3G13540 247 / 1e-81 myb domain protein 5 (.1) Potri.013G056500 [exp] 154 / 7e-45 AT3G13540 236 / 4e-77 myb domain protein 5 (.1) Potri.019G036160 [exp] 153 / 9e-45 AT3G13540 236 / 4e-77 myb domain protein 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028513 [exp] 208 / 4e-66 AT1G66370 205 / 3e-65 myb domain protein 113 (.1) Lus10009130 [exp] 207 / 2e-65 AT1G66370 202 / 3e-64 myb domain protein 113 (.1) Lus10028514 [exp] 187 / 3e-58 AT1G66370 179 / 1e-55 myb domain protein 113 (.1) Lus10009129 [exp] 179 / 1e-54 AT1G66370 179 / 2e-55 myb domain protein 113 (.1) Lus10042522 [exp] 177 / 2e-54 AT1G66370 181 / 7e-57 myb domain protein 113 (.1) Lus10003277 [exp] 163 / 3e-49 AT1G66370 160 / 2e-48 myb domain protein 113 (.1) Lus10000470 [exp] 159 / 4e-47 AT2G16720 196 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10033438 [exp] 159 / 7e-47 AT1G22640 194 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Lus10039173 [exp] 150 / 4e-44 AT3G13540 244 / 3e-81 myb domain protein 5 (.1) Lus10013762 [exp] 148 / 4e-43 AT3G13540 241 / 1e-79 myb domain protein 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.017G125600.1 pacid=42813049 polypeptide=Potri.017G125600.1.p locus=Potri.017G125600 ID=Potri.017G125600.1.v4.1 annot-version=v4.1 ATGGTAGGCTCATTAGGAGTAAGGAAAGGTGCATGGACGGAGGAGGAAGATATACTTCTAAGGAAGTGCGTTGAGAAATATGGTGAAGGAAGATGGCATG AAGTTCCTTCCAGAGCAGGCTTGAATCGATGCAGGAAAAGCTGCAGAATGAGGTGGTTGAATTATCTTAAGCCAAATGTCAAGAGAGGACAGTTTTCGGT GGACGAAGTGGACTTGATTATCAGACTACACAAGTTGCTTGGCAATAGGTGGTCATTGATAGCTGGTAGACTTTCAGGAAGAACAGCGAATGATGTAAAG AATTATTGGAACTCAAACCAGCGTAAGAAGGTGATTTCTAGCACTGATGAAGTTCAATCAAAACCAAAAGCAAAATCAATCACAAGAGACAACATAATAA AGCCTCAACCTTGGAAGTTCAGAAATTTATTCTGGTTAAGAGGAAAAAGTACTCCACTTATTAATGTTGGTTCTCAATATGGGGACGATCTTTGTAAGCC ATGTTATTCAACAGTATCGCCACCTTCCGACATTAATGAAGTTGAAAGTATATGGTGGGAAAGCTCGTTAGAAAGCTCGTTAGATGACAAAGAAATTAAT CCAACGATCAACAGCAGTTGTCTGGGTTCTGTTTCAGCAGCAGCAGCTTACCTAGAGTCCAGCGAAAGTCATTTTGTAAAGAACAACGCACCAAGAGGGA TAAAAACTGGGGACGTGTTCTATGAACAAGGACAAAATTGTTGGAGTGACATTTCTTTGGATGCAGACCTTTGGAATCTAATCAATACAGAACTAGATCA ACAGCAACCTGAAGGACTTCAGTCTATAATGTTGTAA
AA sequence Show only first row Show all	>Potri.017G125600.1 pacid=42813049 polypeptide=Potri.017G125600.1.p locus=Potri.017G125600 ID=Potri.017G125600.1.v4.1 annot-version=v4.1 MVGSLGVRKGAWTEEEDILLRKCVEKYGEGRWHEVPSRAGLNRCRKSCRMRWLNYLKPNVKRGQFSVDEVDLIIRLHKLLGNRWSLIAGRLSGRTANDVK NYWNSNQRKKVISSTDEVQSKPKAKSITRDNIIKPQPWKFRNLFWLRGKSTPLINVGSQYGDDLCKPCYSTVSPPSDINEVESIWWESSLESSLDDKEIN PTINSSCLGSVSAAAAYLESSESHFVKNNAPRGIKTGDVFYEQGQNCWSDISLDADLWNLINTELDQQQPEGLQSIML

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Potri.017G125600 [exp]	0	1
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.018G094800 [exp]	1.00	0.9878
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Potri.008G157750 [exp]	2.44	0.9875
AT1G59960			NAD(P)-linked oxidoreductase s...		Potri.012G039901 [exp]	2.82	0.9539
					Potri.003G189601 [exp]	3.16	0.9659
AT1G64320			myosin heavy chain-related (.1...		Potri.003G137300 [exp]	3.31	0.9362
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Potri.010G179900 [exp]	3.74	0.9556
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Potri.008G157900 [exp]	4.00	0.9826
					Potri.016G065800 [exp]	5.00	0.8701
AT5G17220		GST26, TT19, AT...	TRANSPARENT TESTA 19, GLUTATHI...		Potri.017G138800 [exp]	6.00	0.9530	ATGSTF10.1
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Potri.004G155400 [exp]	6.00	0.9597

Compare expression of checked genes

Potri.017G125600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.