Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 412 / 1e-126 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 367 / 1e-107 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 248 / 7e-69 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT3G07040 190 / 2e-49 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G58390 187 / 2e-48 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59218 187 / 4e-48 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58848 187 / 4e-48 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G35450 182 / 5e-47 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58410 180 / 3e-46 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G50180 178 / 1e-45 NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G138100 [exp] 1550 / 0 AT3G14470 397 / 4e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.017G137700 [exp] 1474 / 0 AT3G14470 437 / 7e-136 NB-ARC domain-containing disease resistance protein (.1) Potri.017G136400 [exp] 1468 / 0 AT3G14470 413 / 5e-128 NB-ARC domain-containing disease resistance protein (.1) Potri.017G133600 [exp] 1401 / 0 AT3G14470 424 / 4e-132 NB-ARC domain-containing disease resistance protein (.1) Potri.017G133666 [exp] 1375 / 0 AT3G14470 416 / 7e-129 NB-ARC domain-containing disease resistance protein (.1) Potri.017G127200 [exp] 1244 / 0 AT3G14470 404 / 4e-123 NB-ARC domain-containing disease resistance protein (.1) Potri.017G136700 [exp] 1199 / 0 AT3G14470 376 / 9e-116 NB-ARC domain-containing disease resistance protein (.1) Potri.017G128000 [exp] 1122 / 0 AT3G14470 435 / 6e-135 NB-ARC domain-containing disease resistance protein (.1) Potri.017G127800 [exp] 1097 / 0 AT3G14470 437 / 1e-135 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039540 [exp] 491 / 2e-155 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 476 / 1e-148 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005321 [exp] 455 / 8e-140 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005218 [exp] 444 / 2e-137 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10026109 [exp] 447 / 6e-137 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 429 / 1e-130 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 428 / 2e-130 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026132 [exp] 425 / 8e-128 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10022351 [exp] 417 / 6e-126 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10042117 [exp] 362 / 5e-108 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.017G136266.1 pacid=42813643 polypeptide=Potri.017G136266.1.p locus=Potri.017G136266 ID=Potri.017G136266.1.v4.1 annot-version=v4.1 ATGGGGAACTTGAATTCCCCAATTCTTCAAGAGCTTGGACTTGCTGGGGGCCTAACGACCGAGCTTGAAAATCTCAAGCGCACGTTCAGAACCATTCAAG CTGTGCTGCAAGATGCAGAGGAGAAGCAGTGGAAGAGTGAGCCTATCAAGGTGTGGCTCAGCGACCTCAAGGATGCAGCTTATGTTGTTGATGATGTACT GGATGACTTTGCAATTGAAGCTAAGTGGCTTCTGCAGCGAAGAGATCTCCAAAATCGAGTAAGATCCTTCTTTTCTAGCAAACATAATCCACTTGTTTTT CGACAAAGGATGGCTCATAAATTGAAGAATGTTAGAGAAAAACTAGATGCCATTGCCAAGGAGAGACAAAATTTCCACCTAACAGAGGGGGCTGTGGAGA TGGAAGCAGATAGTTTTTTTCAGCGTCAGACTTGGTCTTTGGTGAATGAATCAGAAATTTATGGGAGAGGCAAGGAGAAAGAGGAACTAATCAACGTGCT GCTCCCTACTTCAGGTGATCTCCCTATTCATGCTATAAGGGGGATGGGGGGGATGGGTAAAACAACACTTGTTCAACTGGTCTTCAATGAAGAAAGTGTC AAACAGCAATTCAGTTTGAGGATCTGGGTGTGTGTATCTACTGATTTCGATCTCAGAAGATTAACAAGAGCCATCATAGAGTCCATTGATGGTGCCTCTT GTGATCTTCAAGAATTGGATCCCTTGCAACGATGCCTCCAACAGAAGTTAACTGGAAAGAAGTTTTTGCTTGTATTGGATGATGTGTGGGAAGATTATAC TGATTGGTGGAGTCAATTGAAGGAGGTATTAAGGTGTGGATCTAAAGGTAGTGCTGTCATAGTAACTACGCGTATTGAGATTGTTGCTCTTAGAATGGCA ACAGCTTTTGTCAAGCACATGGGGAGATTGTCTGAAGAAGATTCCTGGCATTTGTTTCAACGGCTTGCATTCGGGATGAGAAGGAAAGAGGAGCGGGCAC ACCTGGAAGCCATTGGAGTATCAATAGTGAAGAAGTGTGGTGGTGTTCCTTTAGCTATAAAGGCACTCGGGAACCTAATGCGGCTAAAAGATAATGAAGA TCAGTGGATAGCTGTCAAAGAAAGTGAGATTTGGGATCTAAGAGAAGAAGCAAGCAAGATTTTACCTGCTTTGAGGTTGAGTTACACTAATCTATCACCA CATTTGAAGCAATGCTTTACGTATTGCGCTATATTTCCAAAAGATCACGTGATGAGGAGGGAGGAGTTGGTTGCTTTGTGGATGGCAAATGGTTTTATTT CTTGCAGAAGAGAAATGGATTTGCACGTTATGGGCATTGAGATATTCAATGAACTAGTGGGAAGGTCATTTCTGCAAGAGGTCGAGGATGATGGATTTGG CAACATAACATGTAAAATGCATGATCTTATGCATGATCTTGCACAATCCATTGCAGTACAAGAATGCTATATGAGTACAGAAGGCGATGGGAAGTTGGAA ATTCCTAAAACTGTCCGTCATGTAGCTTTTTATAACAAATCAGGAGCTTCGTCTTCTGAAGTTCTCAAGGTCCTATCACTTCGTTCACTTCTTTTGAGGA ATGATGCTCTTCGAAATGAATGGGGAAAGTTTCTTAGTCGAAAACATCGAGCCTTGAGATTAATAAATGTCCGGGTGGAGAATTTTCCGAAGTCAATTTG TGATTTGAAACATCTAAGGTATCTAGATGTATCAGGCTCCGAGTTCAAAACACTGCCTGAAAGTATAACCTCACTCCAAAACCTCCAGACACTAGATTTG AGATATTGCAGAGAACTCATCCAATTACCAAAAGGTATGAAGCACATGAAAAGTCTTGTCTATCTTGACATCACGGGTTGCCATTCACTTCGATTTATGC CTTATGGAATGGGGCAATTGATATGCCTGCGAAAGCTTACCTTGTTCATTGTGGGCAAGGAGGATGGTCGTTTCATAGGGGAGCTGGAAAGGCTGAATAA TCTTGCTGGTGAATTGAGTATCACAGATCTTGATAATGTTAAGAATTCAACAGATGCAAGAACTGCCAATTTGAAGTTGAAGGCAGCTCTTCTATCATTG ACTTTATCATGGCAAGTGAATGGAGCTTTCATTATGCGTTCACTACCAAATAATGAGCAGGAGGTCCTTGAAGGGCTTCAGCCTCATTCAAATCTGAAGA AGTTGAGGTTAGTTGGATATGGTGGTTCAAAATTTCCAAATAATTGGATGATGAACTTGAACTTGATGCTACCAAATCTAGTGGAGATGGAGCTAAAAGC ATGTCATAACTGTGAACAACTTCCACCATTCGGGAAACTGCAGTTCCTCAAGAATCTTAAGTTACATGCAATGGATGGTGTGAAGTGTATTGACAACAAT GTGTATGGAGATGAGGAAGATCCATTCCCATCTTTGGAGACGCTGACTTTCGATTCAATGGAGAGATTAGAGCAATGGGCTGCGTGTACTTTTCCTCGCC TTCGAGAATTGAACATAGTTGATTGCCCTGTGTTGAACGAAATACCAACTATACCCTCTATAAAAAAATTAGATATCCAGGGAGGGAATGTGTCATTGCT GATGTCAGTTCGGAATCTCGTTTCTATCACTTCTCTTCATATTTCATGGATTCCCAACGTGAGGGAGCTTCCCGATGGGTTATTGCAAAATCATACGCTC CTTGAGGATTTACGAATTTTTTATCTGCAAAATCTACAATCTTTGTCAAATAAGGTATTAGATAACCTTTCTGCTCTTAAAAGTTTGTCCATTCAGTGGT GTGATGAACTTGAAAGCTTGCCAGAGGAAGGTCTTCGGAACCTCACTTCTCTGGAGGTTTTACACATAGCTGATTGTGGAAGATTAAATTCTTTGCCAAT GAATGGGCTGTGTGGCTTATCTTCTCTTCGTCGCTTTTTGATTCAAGGTTGTAATCAATTTGCATCGCTAACTGAGGGAGTGCGACATCTGACAGCACTT GAGTATTTGGGGCTTTATCGATGTCCCGAGCTGAATTCATTGCCAGATAGTATCCAACATCTCACTTCTCTCCTATCTCTAGTGATCTACGATTGTCCAA ATTTGGAGAAAAGGTGTGAGAAAGAGAGAGGAAAGGACTGGCCTAAGATAGCTCACATCCCTGACATTGAAATCAACTGA
AA sequence Show only first row Show all	>Potri.017G136266.1 pacid=42813643 polypeptide=Potri.017G136266.1.p locus=Potri.017G136266 ID=Potri.017G136266.1.v4.1 annot-version=v4.1 MGNLNSPILQELGLAGGLTTELENLKRTFRTIQAVLQDAEEKQWKSEPIKVWLSDLKDAAYVVDDVLDDFAIEAKWLLQRRDLQNRVRSFFSSKHNPLVF RQRMAHKLKNVREKLDAIAKERQNFHLTEGAVEMEADSFFQRQTWSLVNESEIYGRGKEKEELINVLLPTSGDLPIHAIRGMGGMGKTTLVQLVFNEESV KQQFSLRIWVCVSTDFDLRRLTRAIIESIDGASCDLQELDPLQRCLQQKLTGKKFLLVLDDVWEDYTDWWSQLKEVLRCGSKGSAVIVTTRIEIVALRMA TAFVKHMGRLSEEDSWHLFQRLAFGMRRKEERAHLEAIGVSIVKKCGGVPLAIKALGNLMRLKDNEDQWIAVKESEIWDLREEASKILPALRLSYTNLSP HLKQCFTYCAIFPKDHVMRREELVALWMANGFISCRREMDLHVMGIEIFNELVGRSFLQEVEDDGFGNITCKMHDLMHDLAQSIAVQECYMSTEGDGKLE IPKTVRHVAFYNKSGASSSEVLKVLSLRSLLLRNDALRNEWGKFLSRKHRALRLINVRVENFPKSICDLKHLRYLDVSGSEFKTLPESITSLQNLQTLDL RYCRELIQLPKGMKHMKSLVYLDITGCHSLRFMPYGMGQLICLRKLTLFIVGKEDGRFIGELERLNNLAGELSITDLDNVKNSTDARTANLKLKAALLSL TLSWQVNGAFIMRSLPNNEQEVLEGLQPHSNLKKLRLVGYGGSKFPNNWMMNLNLMLPNLVEMELKACHNCEQLPPFGKLQFLKNLKLHAMDGVKCIDNN VYGDEEDPFPSLETLTFDSMERLEQWAACTFPRLRELNIVDCPVLNEIPTIPSIKKLDIQGGNVSLLMSVRNLVSITSLHISWIPNVRELPDGLLQNHTL LEDLRIFYLQNLQSLSNKVLDNLSALKSLSIQWCDELESLPEEGLRNLTSLEVLHIADCGRLNSLPMNGLCGLSSLRRFLIQGCNQFASLTEGVRHLTAL EYLGLYRCPELNSLPDSIQHLTSLLSLVIYDCPNLEKRCEKERGKDWPKIAHIPDIEIN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.017G136266 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.017G136700 [exp]	2.44	0.8803
AT5G35750		AHK2	histidine kinase 2 (.1)		Potri.014G164700 [exp]	7.74	0.7517
AT5G45500			RNI-like superfamily protein (...		Potri.019G036900 [exp]	11.83	0.7310
AT5G06740			Concanavalin A-like lectin pro...		Potri.001G455500 [exp]	26.15	0.6909
AT1G15110		PSS1	phosphatidylserine synthase 1,...		Potri.010G117500 [exp]	27.54	0.6822
					Potri.013G055800 [exp]	36.18	0.6268
AT1G11880			transferases, transferring hex...		Potri.001G008600 [exp]	37.73	0.6387
AT3G53820	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.006G089301 [exp]	38.82	0.7143
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Potri.017G087800 [exp]	41.56	0.6509
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121876 [exp]	47.32	0.6949

Compare expression of checked genes

Potri.017G136266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.