Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 292 / 1e-84 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 261 / 4e-73 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G43470 189 / 1e-49 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G48620 183 / 8e-48 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59780 177 / 5e-46 NB-ARC domain-containing disease resistance protein (.1) AT3G50950 174 / 8e-45 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT3G07040 172 / 2e-44 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G53350 169 / 3e-43 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58410 169 / 5e-43 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G35450 168 / 6e-43 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G143820 [exp] 1233 / 0 AT3G14470 316 / 3e-93 NB-ARC domain-containing disease resistance protein (.1) Potri.018G017900 [exp] 1226 / 0 AT3G14470 299 / 3e-87 NB-ARC domain-containing disease resistance protein (.1) Potri.017G143700 [exp] 1216 / 0 AT3G14470 286 / 2e-82 NB-ARC domain-containing disease resistance protein (.1) Potri.017G143433 [exp] 1197 / 0 AT3G14470 321 / 1e-94 NB-ARC domain-containing disease resistance protein (.1) Potri.004G076700 [exp] 402 / 7e-129 AT3G14470 143 / 4e-35 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121700 [exp] 380 / 2e-116 AT3G14470 461 / 2e-144 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121500 [exp] 372 / 1e-113 AT3G14470 483 / 9e-153 NB-ARC domain-containing disease resistance protein (.1) Potri.017G137700 [exp] 352 / 1e-106 AT3G14470 437 / 7e-136 NB-ARC domain-containing disease resistance protein (.1) Potri.017G127800 [exp] 342 / 1e-102 AT3G14470 437 / 1e-135 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005218 [exp] 324 / 1e-95 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 322 / 2e-94 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10022351 [exp] 320 / 2e-93 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 318 / 3e-92 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10042117 [exp] 305 / 2e-89 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 299 / 8e-87 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026109 [exp] 300 / 3e-86 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 295 / 1e-84 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10011278 [exp] 288 / 6e-83 AT3G14470 356 / 1e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10005321 [exp] 273 / 7e-77 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.017G140132.1 pacid=42814068 polypeptide=Potri.017G140132.1.p locus=Potri.017G140132 ID=Potri.017G140132.1.v4.1 annot-version=v4.1 ATGGCAGAATCTTTTGCAGCCGAGATTGCAAAATCCCTTTTAGGGAAGTTAGGCTCTTTGGCTGTCCAGGAATTTTGTTTGGCATGGGGACTTGAAGCTG ACCTTGCACGTCTTGAAGAGAGATTGTCAGCCATCAACGCAGTGCTATCTGATGCGGAGAAGCAACAATCAAGGAACGACAAGATTCGGCTCTGGCTCCA AACGCTCAGAGAAGTCTTGTATGATGCGGAGGACGTGCTGGATGAATTTGAGTGCGAGACTTTGCGAAGGCAGGTGGTGAAAACTACGGGCAGCACCAGC AGCAAGGTACGGCGCTCTCTTGGTCTAAGTTCTAATATGATTGCATTCCGTTTAAGAATGGGTCATAAGATAAAGAACATCATAGAAAGACTAGCTGAGA TTTCATCTCTTAAGTCTGACTTCAACCTCCACGAGCATCCTAATGATTATAGTAATGTCTTGCATGAGGAAATAGTGATGAACCGATCCTTTCAGAGCTT TTTCGGTCTTATTGGAAGAGATGGAGACACAGAACGCATCATCAACCTTTTAGTAGAACCTTTAAGAGATGGTGACGCACATCCCCTTGTCCTTCCGATG GTTGGAATGGGAGGCTTGGGGAAGACTGCTCTTGCCAAATCGGTGTATGATAATGAAATTGTAAAAGCTCATTTCGAACTGAAAATGGAGGCATGCGTTT CCGATAGTTTTTCCTTAAAACTAGTGGTACCAAAAATCATTAAATCTGCAACTGGGGAAATATGTGCAAATCTGGATGAGGGTGAACTAAGACAAAAACT ATTAACAGTTTTGGATGGTAGGAAATACTTGCTTGTCTTAGATGATGTTTGGAATGAAGATCCTCAAAAATGGTTGTTGTTGAAGCCTCTGTTATCAAAA GGTGCGTTTGGAAGTAAAATCTTAGTAACTACCCGTAGTCAACGTGTTGTTGAGATTATGGGTACTGTTACTCCATACAACCTAACTCTTCTGGGTCAAA GGGATTGTTTGTCGTTGTTTTACAAGTGTGCATTCAAGGAAAGGCAAATGGAGTTGTATCCAAATTTAGCAGAAATTGGGAAAGATATAGTGGGAAAATG CAAGCAAATTCCTTTGGCAGTGATTAACTTGGGGACTCAACTGTATGGTAAAACTGATGAAAAAGAGTGGAAATCGGTGAGAGATAGTGACAAGTGGGAG GAGAAGGGAGATGGTATTTTACCTGCTTTGAAGATAAGTTATCAACGACTGCCGACTCACTTGAAAAGATGCTTTCTTTATTCTTCCATTTTTCCAAAAG ATCATCTCTTCTCGGATCTTGAATTGGTGCAATTTTGGATGGCGCATGGACTCATTCAATCATCAAATCCAAATGAAAACTTGGAAGATGTTGGCTTGCG TTATGTGCGTGAGTTGATCTCAAAATGTTTCTTCCAAGATTACGAGGATTGGATTTTTGGAGCTTTATTTAAAATGCATGACTTAATGCATGATCTTGCA TCATCATTGGCTCAAAATGAGTGTTCAATCATAAGCTCTCAAAACCACCAAATTTCCAAAACCACCCGTCATTTGTCAATTCTCGACTCTGATTCATTTT TTCATCAAACTCTTCCCAAGTTCACAAATAAATTACCTCATGTGCGGTCAATACTCTTTGCAACTGGCCTAGAGGCTCCTAGATGCAAGGCAGACTTTGA GAAATGCTTGTCAGAATTTAAACATTTGCGGTCTTTAGAATTAATGGATGGTTCTGAATTTGAAGCTTTGCCTGAGAAGATTGGTGCCTTGAAACATTTG AGATATCTCAGTTTTGCTGGGTCAAAAATGAAAAGACTCCCAAAATCCATTTTCAAATTACAAAATTTGCAAGCTCTGCTTGTAGGTGCAAAAGGATTAG AAGAGCTGCCCAAAGATATGAGGTACATGATCAACCTTAGATTTTTATTTCTGGTCACTAATCAGAAGCGGTTCCTAGAAGGTGGGATTGGGTGCTTGGA GTGTCTTCAAACTTTATTCATTGTTCGATGTGAAAATCTCGAATTTTTGTGCGACGATATGCAAGGTCTTAGAAGTCTTCGTAAATTGGTTATTGCTGGA TGTAAAAGTCTAATTTCTTTGCCGCAAAGCATGAAATCCCTAACTGCACTGGAGGAATTGTATGTTTGCGATTGTGAAAAGCTTAATTTAATGATGACAG AGGAAGAGAAAGACAAAAAAATTCAACCGCTTTCCCTTCGGATTGTATTTTTTGGATGGTTAACAACAACAATTACACTACCAAAACAGCTTCTTGAAGG ATCTACGGACTCCTTACAAACATTTATCATCGGAGATTGTCCAAGCATTATAGAATTGCCAGAGTGCGTCAGCAATTTAAAGAAACTTCAAAAACTACAG ATCAGACATTGTCCAAGGTTAAGCAAAAGGTGCCAAAGAGGAACGGGAGAAGATTGGCCCAAGGTCGCTCATATCCCAAGAATCGAGGTTGAC
AA sequence Show only first row Show all	>Potri.017G140132.1 pacid=42814068 polypeptide=Potri.017G140132.1.p locus=Potri.017G140132 ID=Potri.017G140132.1.v4.1 annot-version=v4.1 MAESFAAEIAKSLLGKLGSLAVQEFCLAWGLEADLARLEERLSAINAVLSDAEKQQSRNDKIRLWLQTLREVLYDAEDVLDEFECETLRRQVVKTTGSTS SKVRRSLGLSSNMIAFRLRMGHKIKNIIERLAEISSLKSDFNLHEHPNDYSNVLHEEIVMNRSFQSFFGLIGRDGDTERIINLLVEPLRDGDAHPLVLPM VGMGGLGKTALAKSVYDNEIVKAHFELKMEACVSDSFSLKLVVPKIIKSATGEICANLDEGELRQKLLTVLDGRKYLLVLDDVWNEDPQKWLLLKPLLSK GAFGSKILVTTRSQRVVEIMGTVTPYNLTLLGQRDCLSLFYKCAFKERQMELYPNLAEIGKDIVGKCKQIPLAVINLGTQLYGKTDEKEWKSVRDSDKWE EKGDGILPALKISYQRLPTHLKRCFLYSSIFPKDHLFSDLELVQFWMAHGLIQSSNPNENLEDVGLRYVRELISKCFFQDYEDWIFGALFKMHDLMHDLA SSLAQNECSIISSQNHQISKTTRHLSILDSDSFFHQTLPKFTNKLPHVRSILFATGLEAPRCKADFEKCLSEFKHLRSLELMDGSEFEALPEKIGALKHL RYLSFAGSKMKRLPKSIFKLQNLQALLVGAKGLEELPKDMRYMINLRFLFLVTNQKRFLEGGIGCLECLQTLFIVRCENLEFLCDDMQGLRSLRKLVIAG CKSLISLPQSMKSLTALEELYVCDCEKLNLMMTEEEKDKKIQPLSLRIVFFGWLTTTITLPKQLLEGSTDSLQTFIIGDCPSIIELPECVSNLKKLQKLQ IRHCPRLSKRCQRGTGEDWPKVAHIPRIEVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.017G140132 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Potri.001G412000 [exp]	1.41	0.8987
AT5G56260			Ribonuclease E inhibitor RraA/...		Potri.011G169700 [exp]	2.44	0.8676
AT5G57850			D-aminoacid aminotransferase-l...		Potri.018G039000 [exp]	5.29	0.8510
AT1G14780			MAC/Perforin domain-containing...		Potri.010G104600 [exp]	5.65	0.8465
AT4G27300			S-locus lectin protein kinase ...		Potri.011G125201 [exp]	6.48	0.8512
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Potri.004G046100 [exp]	6.92	0.8681
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Potri.005G205200 [exp]	8.36	0.8448
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.009G154600 [exp]	9.16	0.8385
AT5G63020			Disease resistance protein (CC...		Potri.001G313300 [exp]	10.39	0.8453	RGA3.1
AT1G53430			Leucine-rich repeat transmembr...		Potri.001G385750 [exp]	14.49	0.8106

Compare expression of checked genes

Potri.017G140132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.