Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52510 439 / 5e-146 GRAS SCL8 SCARECROW-like 8 (.1) AT1G21450 273 / 8e-83 GRAS SCL1 SCARECROW-like 1 (.1) AT5G48150 248 / 1e-74 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G04890 233 / 7e-70 GRAS SCL21 SCARECROW-like 21 (.1) AT1G50600 230 / 7e-67 GRAS SCL5 scarecrow-like 5 (.1) AT4G17230 209 / 1e-59 GRAS SCL13 SCARECROW-like 13 (.1) AT5G17490 149 / 2e-38 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT2G29065 150 / 4e-38 GRAS family transcription factor (.1) AT3G03450 146 / 3e-37 GRAS RGL2 RGA-like 2 (.1) AT3G50650 146 / 3e-37 GRAS SCL7 GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G078800 [exp] 659 / 0 AT5G52510 482 / 1e-162 SCARECROW-like 8 (.1) Potri.002G073400 [exp] 273 / 6e-83 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.005G186500 [exp] 268 / 5e-81 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.001G409500 [exp] 241 / 6e-71 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.014G164400 [exp] 240 / 6e-71 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.011G131100 [exp] 234 / 3e-68 AT1G50600 505 / 8e-174 scarecrow-like 5 (.1) Potri.001G361700 [exp] 231 / 1e-67 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.016G009700 [exp] 199 / 8e-56 AT4G17230 675 / 0.0 SCARECROW-like 13 (.1) Potri.006G016200 [exp] 197 / 3e-55 AT4G17230 641 / 0.0 SCARECROW-like 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039265 [exp] 485 / 3e-163 AT5G52510 503 / 1e-170 SCARECROW-like 8 (.1) Lus10027505 [exp] 437 / 2e-146 AT5G52510 443 / 2e-149 SCARECROW-like 8 (.1) Lus10029747 [exp] 259 / 1e-77 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10042776 [exp] 258 / 3e-77 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10012323 [exp] 237 / 4e-70 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10016596 [exp] 236 / 1e-69 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10035840 [exp] 234 / 2e-68 AT5G48150 498 / 2e-172 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10006369 [exp] 228 / 1e-66 AT5G48150 633 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10036623 [exp] 227 / 2e-66 AT5G48150 486 / 9e-169 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10003772 [exp] 203 / 3e-60 AT5G48150 439 / 2e-154 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.017G142400.2 pacid=42813690 polypeptide=Potri.017G142400.2.p locus=Potri.017G142400 ID=Potri.017G142400.2.v4.1 annot-version=v4.1 ATGGCATCTGGGTTTTCAAGCGGTGGTGGTGGTGGAGGAGGAGGAGGAGGCGGTGGTGGTTTCCAAGATTTCTACACTAATAGATCATCTCTACCCACCA TGAACCTCTCAAATAACCCATCATCATTGCCTCCTTACAGAACCAACCAAATCTTTCTTGACCAAAATTTGTCTTCTCATAATTATCAACAGATCGCTCA ACATAGAGCAATCTTGCCCACAAATATGAACGCAGCCACCACCACCACGCCAACGTTAATCGGCAAGCGCTCGCTTGCCGATTTTCAATCACATCCGCAG CAAAACTTGCTAAACCAAGCGGCCCTAAATAACCTTCTCCTTCGGTCTGTAAAGCCGAGGATTAATAACAATTTGTTCCAACAAAATACTTCGCCGATTT CAACACTTTCTCCCATTGATTTCTCCGTTAACAACTTGTCTCCTCAGCTCCCTAACTTAATGCCTCAACGTTATAGTCTGCCTCTTCTTCAACAACTTCG CTCCCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCGCCCCATGAATCTTATGAGTTCTAACGGTGTCATCAACAACAATAACAACAACATGATGCCGTAT GTGAATATGTTACAGAACCAAAACGGAGGAGGAAACGGAGTAGTTATGGGCCAAGATCGGGAGAAAAAGATGCTGAATCAGCTTCAAGAACTGGAAAAAC AGCTTTTAGACGACGATGACGACAACCAAGAAGGTGACGATGTAAGTGTTATAACGAACACTAACAGTGAATGGTCTGAGACGATACAGAATCTCATGAG TTCTTGTAATAATCCGATTTCTCCATCGCCCACTTCATCATCTTCATCCTCATCTTCGACAGTCACCACGCCGGTTTCGAAACAGACAATAATCGAAGCA GCATCAGCAATTTACGAAGGTAAAACTGATGTTTACCCTGAGATCTTGTCTCGTATCTGTCAGGTTGCGAACCCACAAGGGAATTCTGGACAGAGATTGA TGGAATACATGTTGATGGCTTTAAAATCCCGGGTTAATTCTGCTGAAAAAACACCTTCTGTAAGGGAGTTGTACAACAAGGAACATGTAGATGCAACCCA GTCCTTATATGACTTGTCACCTTGTTTCAAGCTTGGTTTCATGGCTGCCAATCTTGCCATCATTGAGGCCACAAGAGAGCAAGGCCGAGAGATGAATAGC TGCAGCAATGGCTTCCATGTTGTTGATTTTGATATCGGTCAAGGAGGGCAATACATGAACCTTCTACACGCGCTTTCTGGGCTTCAAAATTTGAAGCCAG CCATTGTTAAGATCACAGCTGTTGCTGCTGATAGCAATGGTGGAGAGGAGAAGGAGAGGTTGAGGCTAGTTGGTGAAACGCTGAGTCAACTCGCTCAGCG ATTACGACTAAGTCTGTGTTTCAACGTTGTGAGTTGCAGACTCAGTGAGTTGTCTCGGGAGTCCCTCGGGTGCGAGCCGGAAGAGGCCTTGGCTGTCAAT TTTGCGTTCAAGCTGTATAGAATGCCCGATGAGAGCGTGTCCACAGAGAATCCAAGGGATGAGCTTTTGAGGCGCGTGAAGGGGTTGGGGCCGCGCGTTG TGACAATAGTGGAGCAAGAAATGAATACCAATACAGCCCCCTTCATGGCGCGCGTGAACGAATCATGTTCATATTACGGAGCGCTATTCGACTCAATCAA CTCAACAATGGAAAGGGATAGCTCAGAGCGAGCAAGGGTCGAGGAGGGACTGGGTCGGACGATAGTAAACTCGGTTGCTTGCGAAGGCAGGGACCGGATT GAAAGATGCGAGGTCTTTGGGAAATGGCGGGCCCGGATGGGAATGGCAGGGTTCGAGTTGAAGCCGATGAGTCAAATCGTTGCTGAGTCAATGAAAGCGA GATTGAGTTTAACAAACCGAGTTAACCCAGGATTTACTGTTAAAGAAGAGAACGGTGGGGTATGTTTTGGTTGGAAGGGAAAAACGCTCACTGTCGCTTC TGCTTGGCGTTAA
AA sequence Show only first row Show all	>Potri.017G142400.2 pacid=42813690 polypeptide=Potri.017G142400.2.p locus=Potri.017G142400 ID=Potri.017G142400.2.v4.1 annot-version=v4.1 MASGFSSGGGGGGGGGGGGGFQDFYTNRSSLPTMNLSNNPSSLPPYRTNQIFLDQNLSSHNYQQIAQHRAILPTNMNAATTTTPTLIGKRSLADFQSHPQ QNLLNQAALNNLLLRSVKPRINNNLFQQNTSPISTLSPIDFSVNNLSPQLPNLMPQRYSLPLLQQLRSHQQQQQQQQQRPMNLMSSNGVINNNNNNMMPY VNMLQNQNGGGNGVVMGQDREKKMLNQLQELEKQLLDDDDDNQEGDDVSVITNTNSEWSETIQNLMSSCNNPISPSPTSSSSSSSSTVTTPVSKQTIIEA ASAIYEGKTDVYPEILSRICQVANPQGNSGQRLMEYMLMALKSRVNSAEKTPSVRELYNKEHVDATQSLYDLSPCFKLGFMAANLAIIEATREQGREMNS CSNGFHVVDFDIGQGGQYMNLLHALSGLQNLKPAIVKITAVAADSNGGEEKERLRLVGETLSQLAQRLRLSLCFNVVSCRLSELSRESLGCEPEEALAVN FAFKLYRMPDESVSTENPRDELLRRVKGLGPRVVTIVEQEMNTNTAPFMARVNESCSYYGALFDSINSTMERDSSERARVEEGLGRTIVNSVACEGRDRI ERCEVFGKWRARMGMAGFELKPMSQIVAESMKARLSLTNRVNPGFTVKEENGGVCFGWKGKTLTVASAWR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52510	GRAS	SCL8	SCARECROW-like 8 (.1)		Potri.017G142400 [exp]	0	1
AT5G08139			RING/U-box superfamily protein...		Potri.012G065300 [exp]	6.00	0.7749
AT1G53570		MAPKKK3, MAP3KA	MAP KINASE KINASE KINASE 3, mi...		Potri.005G062500 [exp]	9.48	0.7456	Pt-MAP3.1
AT4G00335		RHB1A	RING-H2 finger B1A (.1.2.3)		Potri.014G087000 [exp]	11.40	0.7715
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Potri.010G108900 [exp]	12.08	0.8011
AT3G12400		ELC, ATELC	Ubiquitin-conjugating enzyme/R...		Potri.003G191100 [exp]	19.89	0.7977
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Potri.018G085100 [exp]	20.49	0.7779
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Potri.001G370366 [exp]	22.18	0.7845
AT3G54680			proteophosphoglycan-related (....		Potri.013G072200 [exp]	24.39	0.7838
AT1G78230			Outer arm dynein light chain 1...		Potri.005G164000 [exp]	29.54	0.6912
AT5G43210			Excinuclease ABC, C subunit, N...		Potri.001G260600 [exp]	33.98	0.7886

Compare expression of checked genes

Potri.017G142400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.