Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 322 / 6e-95 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 294 / 1e-83 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G59780 217 / 8e-59 NB-ARC domain-containing disease resistance protein (.1) AT5G48620 207 / 1e-55 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G50950 204 / 1e-54 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G50180 203 / 2e-54 NB-ARC domain-containing disease resistance protein (.1) AT5G43470 203 / 3e-54 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58390 198 / 2e-52 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46530 197 / 2e-52 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT3G07040 192 / 2e-50 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G143820 [exp] 1481 / 0 AT3G14470 316 / 3e-93 NB-ARC domain-containing disease resistance protein (.1) Potri.017G143700 [exp] 1425 / 0 AT3G14470 286 / 2e-82 NB-ARC domain-containing disease resistance protein (.1) Potri.018G017900 [exp] 1415 / 0 AT3G14470 299 / 3e-87 NB-ARC domain-containing disease resistance protein (.1) Potri.017G140132 [exp] 1279 / 0 AT3G14470 292 / 1e-84 NB-ARC domain-containing disease resistance protein (.1) Potri.004G076700 [exp] 413 / 1e-132 AT3G14470 143 / 4e-35 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121700 [exp] 405 / 5e-125 AT3G14470 461 / 2e-144 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121500 [exp] 402 / 5e-124 AT3G14470 483 / 9e-153 NB-ARC domain-containing disease resistance protein (.1) Potri.017G127800 [exp] 393 / 5e-121 AT3G14470 437 / 1e-135 NB-ARC domain-containing disease resistance protein (.1) Potri.001G379700 [exp] 379 / 3e-119 AT3G14470 572 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005218 [exp] 365 / 8e-110 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 358 / 1e-106 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10042117 [exp] 353 / 1e-106 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 344 / 1e-102 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 347 / 3e-102 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 344 / 8e-101 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 337 / 6e-99 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 337 / 8e-99 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 316 / 1e-91 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005321 [exp] 315 / 5e-91 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.017G143433.1 pacid=42814638 polypeptide=Potri.017G143433.1.p locus=Potri.017G143433 ID=Potri.017G143433.1.v4.1 annot-version=v4.1 ATGGAGCCATTGTACATTTTAATTAAGAAGACTCAACGACTTCTCCTCTCCACTCAGAAAAGAAAGCGGAACTCCACTCTTATCTCAATCATTTTTTTCC CTATCAAACACTTCCTCCCCTCACTCAAAAAGAAAATGGCCGAAGCTTTTGCAGCCGATATTGCAAAATCCCTTCTAGGGAAGTTAGGCTCTTTCGCTGT TCAAGAATTTCGTTTGGCATGGGGACTTGAAGATGACCTTGCACGTCTTGAAGAGATATTGAAAGCCATCAACGCGGTGCTGTCCGATGCTGAGCAGAAA CAATCAAAGAATAACGGGATTCGGCTCTGGCTCCATATGCTCAGAGAAGTCTTGTATGATGCAGAGGACGTGCTGGACGAAATCGAGTGCGAAACTTTGC AAAGGAAGGTGGTGAAAACTAAAGGGAGCACCAGCAGAAAGGTACTCCACTTCTTTACAAGATCTCCATTCCGTTTAATAATAGGTCATAAGATAAAGAA GATCATAGAAAGACTAGGTGAGATTTCAGCTCTTAAGTCTGACTTCAACCTCAGCGAGCAGGCTATTGATTGTAGTCATGTCTTGCATGAGGAAACAGAG ATGAACCGATCCTTTGAGAGCTTTTCCGGTCTTATTGGAAGAGATAAAGACAAAGAACGCATCATCAACCTTTTAGCAGCACCTTCTAAGGTTGGTGATG CACATCCCGTTGTCCTTCCGATAGTAGGAATGGGAGGCTTGGGGAAGACATCTCTTGCCAAATCGGTGTGTGATGCTGAAAATGTAAAAAGTCATTTTGA ACTGAAGATGGAGGTCTGTGTTTCAGATGATTTTTCCTTGAAACAAGTGATACAAAAGATTATTAAATCTGCAACTGGGGAAAGATGTGCGGATTTGGAT GAGGGTGAACTTAATAAAAAACTTGAAGAAATTGTGAATGGTAGGAAATACTTGCTTCTTTTGGATGATGTTTGGAATGAAGATGCTCAAAAATGGTTGT TGTTGAAGCCTTTGTTATCAAAAGGTGCTGATGGAAGTAAGATTATAGTAACTACCCGTAGTCAACGTGTTGCTGAGATTATGGGTACTGTTCCTGCGGA CAACCTAAGTCTTCTTGGTCAAGAGGACTGTCTGTCGTTGTTTTACAAGTGTGCATTCAAGGAAGGGCAAAAGGAGTTGTATCCAAATTTGGTTGGAATT GGGAAAGAAATAGTGGAAAAATGCAAGCAAGTTCCTCTGGCAGTGATTAACTTGGGGACTCAACTGTATGGTAAGACTGATGAAAAAGAGTGGCAATCGG TGAGAGACAGTGAGAAGTGGGAAGAAGAGGGAGATGGCATTTTACCTGCCTTGAAAATAAGCTATCAAAGACTGCCGACTCACTTGAAAAGATGCTTTCT TTATTGTTCGGTTTTTCCAAAAGATTACCAATTCGTAGATCTCGAATTGGTGCAATTTTGGATGGCACATGGGCTCATTCATCAATCATCAAATCCAAAC GAGAACTTGGAAGATGTTGGCTTGCGTTATGTGCGCGAGTTGATCTCAAGATGTTTCTTCCAAGATTATGAGAATAAGATTATTATAGCTTCCTTTAAGA TGCATGATTTAATGCATGATCTTGCATCATCATTGGCTCAAAATGAGTTTTCAATCATAAGCTCTCAAAACCACCAAATTTCCAAAACAACCCGTCATTT GTCAGTTCTGGACTCTGATTCATTTTTTCATAGAACTCTCCCCAAGTTCCCAAACAACTTCCATCAAGTGCGGTCAATAGGCTTTGCAGATAGTATAGTG GGGCCCACATGCAAAACAGACTTTGAGAAATGTTTGTTAGAATTTAAGCATTTGCGGTCTTTGGAATTAATGGATGATTCTGAATTTGAGACTTTTCCGG AGAGTATTGGGGCCTTGAAACATTTGAGATATCTCTATTTTGGGAGCAACACAAAAATAAAAAGACTCCCAAAATCTATTTTCAAATTGCAAAACTTGCA AGCTCTGGCAGTTACAGGTGAAGAGGGATTAGAAGAGCTGCCCAAAGATGTGAGGTACATGATCAGCCTTAGATTTTTATTTCTATTTACTAAGCAAAAG CGGTTGCCAGAAGGTGGGATTGGTTGTTTGGAGTGTCTTCAAACTTTATTCATTGCTCAGTGTGAAAATCTAGAAAATTTGTGCGAAGATATGCAAGGTC TCAAAAGTCTTCGAAAATTGGTTATTTTTGAATGTGATAGCTTGATTTCTCTGCCACGAAGCATAAAATGCTTAACTACTCTGGAAGAATTATTTATTAG TAATTGTCAAAAGCTTGATTTGATGAAAATAAAAGAAGTGAAAGAAAAAAAAATTCAACCTCTTTCCCTTTCTCTTCGTATTGTACTATTTGTGGCGGTA CCAGCAACTATTGCTTTACCAGAACAGCTTCTTGAAGGATCTACAGAATCTTTACAAACATTTATCATCAGAGACTGTCCAAACATTGAAGAAATGCCGG AGTGCATCAGCAATTTAAAAAAACTTCAAAATCTTCAGATTATTAATTGTCCAAGGTTGAGCGAAAGGTGCATAAGGGGAACAGGAGAAGATTGGCCCAA GATCAAGCATATCCCTAAAATCAAGGTTGATGATGATGACAGTGGTGAAGAAACATTTAATTAG
AA sequence Show only first row Show all	>Potri.017G143433.1 pacid=42814638 polypeptide=Potri.017G143433.1.p locus=Potri.017G143433 ID=Potri.017G143433.1.v4.1 annot-version=v4.1 MEPLYILIKKTQRLLLSTQKRKRNSTLISIIFFPIKHFLPSLKKKMAEAFAADIAKSLLGKLGSFAVQEFRLAWGLEDDLARLEEILKAINAVLSDAEQK QSKNNGIRLWLHMLREVLYDAEDVLDEIECETLQRKVVKTKGSTSRKVLHFFTRSPFRLIIGHKIKKIIERLGEISALKSDFNLSEQAIDCSHVLHEETE MNRSFESFSGLIGRDKDKERIINLLAAPSKVGDAHPVVLPIVGMGGLGKTSLAKSVCDAENVKSHFELKMEVCVSDDFSLKQVIQKIIKSATGERCADLD EGELNKKLEEIVNGRKYLLLLDDVWNEDAQKWLLLKPLLSKGADGSKIIVTTRSQRVAEIMGTVPADNLSLLGQEDCLSLFYKCAFKEGQKELYPNLVGI GKEIVEKCKQVPLAVINLGTQLYGKTDEKEWQSVRDSEKWEEEGDGILPALKISYQRLPTHLKRCFLYCSVFPKDYQFVDLELVQFWMAHGLIHQSSNPN ENLEDVGLRYVRELISRCFFQDYENKIIIASFKMHDLMHDLASSLAQNEFSIISSQNHQISKTTRHLSVLDSDSFFHRTLPKFPNNFHQVRSIGFADSIV GPTCKTDFEKCLLEFKHLRSLELMDDSEFETFPESIGALKHLRYLYFGSNTKIKRLPKSIFKLQNLQALAVTGEEGLEELPKDVRYMISLRFLFLFTKQK RLPEGGIGCLECLQTLFIAQCENLENLCEDMQGLKSLRKLVIFECDSLISLPRSIKCLTTLEELFISNCQKLDLMKIKEVKEKKIQPLSLSLRIVLFVAV PATIALPEQLLEGSTESLQTFIIRDCPNIEEMPECISNLKKLQNLQIINCPRLSERCIRGTGEDWPKIKHIPKIKVDDDDSGEETFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.017G143433 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.017G143820 [exp]	3.46	0.9391
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.005G032600 [exp]	4.24	0.9324
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Potri.001G112100 [exp]	4.89	0.9336
AT3G14470			NB-ARC domain-containing disea...		Potri.017G143700 [exp]	4.89	0.9499
AT3G18690		MKS1	MAP kinase substrate 1 (.1)		Potri.005G057800 [exp]	6.32	0.9260
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145530 [exp]	6.70	0.9156
AT5G08240			unknown protein		Potri.005G092400 [exp]	7.14	0.9140
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Potri.018G008500 [exp]	7.21	0.9203	Pt-WRKY11.1
AT1G27170			transmembrane receptors;ATP bi...		Potri.017G143566 [exp]	7.48	0.9167
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G385600 [exp]	7.74	0.9047

Compare expression of checked genes

Potri.017G143433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.