Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 287 / 8e-83 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 268 / 2e-75 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G43470 206 / 3e-55 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT3G50950 203 / 1e-54 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G50180 202 / 3e-54 NB-ARC domain-containing disease resistance protein (.1) AT5G48620 202 / 8e-54 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46530 193 / 4e-51 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT5G35450 188 / 2e-49 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59780 188 / 3e-49 NB-ARC domain-containing disease resistance protein (.1) AT3G07040 186 / 1e-48 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G143820 [exp] 1400 / 0 AT3G14470 316 / 3e-93 NB-ARC domain-containing disease resistance protein (.1) Potri.017G143433 [exp] 1350 / 0 AT3G14470 321 / 1e-94 NB-ARC domain-containing disease resistance protein (.1) Potri.018G017900 [exp] 1346 / 0 AT3G14470 299 / 3e-87 NB-ARC domain-containing disease resistance protein (.1) Potri.017G140132 [exp] 1229 / 0 AT3G14470 292 / 1e-84 NB-ARC domain-containing disease resistance protein (.1) Potri.004G076700 [exp] 419 / 1e-135 AT3G14470 143 / 4e-35 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121500 [exp] 401 / 2e-124 AT3G14470 483 / 9e-153 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121700 [exp] 399 / 2e-123 AT3G14470 461 / 2e-144 NB-ARC domain-containing disease resistance protein (.1) Potri.017G127800 [exp] 375 / 7e-115 AT3G14470 437 / 1e-135 NB-ARC domain-containing disease resistance protein (.1) Potri.001G379700 [exp] 359 / 2e-112 AT3G14470 572 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005218 [exp] 357 / 2e-107 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 348 / 2e-103 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 340 / 3e-101 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10042117 [exp] 337 / 5e-101 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 338 / 8e-100 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 324 / 4e-94 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 319 / 5e-93 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 314 / 5e-91 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 293 / 6e-84 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10011278 [exp] 281 / 2e-80 AT3G14470 356 / 1e-105 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.017G143700.2 pacid=42813463 polypeptide=Potri.017G143700.2.p locus=Potri.017G143700 ID=Potri.017G143700.2.v4.1 annot-version=v4.1 ATGGCTGAAGCTTTTGCATCCGAGATTGCAAAATCCCTTTTAGGGAAGTTAGGTTCTTTTGCTGTTCAAGAATTTCGTTTGGCATGGGGACTTGAAGATG ACCTTGCACGTCTTGAAGAGAGATTGAAAGCCATCAACGCGGTGCTGTCCGATGCTGAGAAGCAACAATCAAAGAATGACAGGATTCGGCTCTGGCTCCA TATGCTCAAACAAGTCTTGTATGATGCCGAGGACGTGCTGGACGAAATCGAGTGCGAAACTTTGCGAAGAGAGGTGGTGAAAACTACAGGGAGCACCAGC AGAAAGGTACGGCGCTTCTTTTCAAGCTCTAATAAGATTGCATTCCGTTTAAGAATGGGTCATAAGATAAAGAGCATCATAGAAAGACTAGCTGAGATTT CATCTCTTAAGTCTGACTTCAACCTCAGCGAGCAGGGTATTGATTGTAGTCATGTCTTGCATGAGGAAACAGGGATGAACCGACCCTTTGATAGCTTCTC CGGTCTTATCGGAAGAGATAAAGACAAAGAACGCATCATCAACCTTTTAGCAGAACCTTTTAAGGTTGGTGATGCACATCCCCTTGTCCTTCCGATAGTA GGAATGGGAGGCTTGGGGAAGACATCTCTTGCCAAATCGGTGTGTGATGCTGAAAATGTAAAATGTCATTTTGAACTGAAGATGGAGGCATGTGTTTCAG ATGATTTTTCCTTGAAACATGTGATACAAAGGATTATTAAATCTGCAACTGGGGAAAGATGTGCGGATTTGGATGAGGGTGAACTTAATAAAAAACTTGA AGAAATTGTGAAGGGTAAGAAATACCTGCTTCTTTTGGATGATGTATGGAATGAAGATGCTCAAAAATGGTTGTTGTTGAAGCCTTCGTTATCAAAAGGT GCTGATGGAAGTAAGATTATAGTAACTACCCGTATTAAACGTGTTGCTGAGATTATGGGTACTGTTACTGCGTACTACCTAAGTCTTCTTGGTCAGGAGG CCTGTCTGTCGTTGTTTTACAAGTGTGCATTCAAGGAAGGGCAAATGGAGTTGTATCCAAATTTGGTTGGAATTGGGAAAGAAATAGTGGCAAAATGCAA GCAAGTTCCTCTGGCAGTGATTAACTTGGGGACTCAACTGTATGGTAAAACTGATGAAAAGGAGTGGGAATCGGTGAGAGACAGTGAGAAGTGGGAAGAA GAGGGAGATCGTATTTTACCTGCCTTGAAAATAAGTTATCAAAGACTGCCGACACACCTGAAAAGATGCTTTCTTTATTGCTCCGTTTTTCCAAAAGATT ACCCATTCTATGATATCTCATTGGTGCATTTTTGGATGGCACAAGGGCTCATTCTCCCATCATCAAATCCAAATGAGAAACTGGAAGATGTTGGCTTGCG TTATGTGCGCGAGTTGATGTCAAGATGTTTCTTCCAAGATTATGAGGATTGGGATTATGTTGCTTTCTTTAAAATGCATGATTTAATGCATGATCTTGCA TTATCATTGTCACAAAGTGAGTGTTCGATCATAGGCTCTCAAAACCATCAAATTTCCAAAACGACCCGTCATTTGTCAGTTCTTGACTCTGATTCATTTT TTCATAAAACTCTCCCCAAGTTTTCAAATGAGTTCCACCATGTGCGGTCAATAGTCTTTGTAGATAGTATAATGGGGCCTACATGCAAAGCAGATTTTAA GAAATGTTTGTCAGAATTTAAGCACTTGCGATGTTTGGAATTAATGGATGATTCTGAATTTGAGGTTTTCCCGGAGAGGATCGGGGCGTTGAAACATTTG AGATATCTCAAGTATAGGTCCAACGCAAACATGAAAAGACACCCAAAATCTCTTTTCAAATTACAAAATTTGCAAGCTCTGGTTACAGGTTTTGGATTAG AAGAGCTGCCCAAAGATGTGAGGTACATGATCAGCCTTAAATTTTTAAGTCTAGCTACTCAGCTGAAGCGGTTGCCAGAAAAAGGGATTGGGTGTTTGGA GTGTCTTCAAACTTTATTCATTGTTGGTTGTGAAAATCTAGAAAATTTGTGCGAAGATATGGAAGGTCTTAAAAGTCTTCGGAAATTGCTTATTAGTAGC TGTGAAAGCTTGATTTCTTTGCCACGAAGTATCAAATGCCTAACTACTCTTGAAGGATTTTTTATTAATAACTGTAAAAAGCTTGATTTAATGACAATAG AAGAAGAGAAAGAGAAAAAAATTCAACCTCTTTTTCTTTCCCTTCGTATTGTACTATTTGCCAGCTTACCAGCAACTCTTGCTTTACCAGAACAGTTTCT TCAAGGATCTGCAGAATCTTTACAAACACTTATCATCACAGACTGTCCAAACATTAGAGAAATGCCAGATTGCATCGACAATTTAAAGAAACTTCAAAAT CTTGAGGTCATTGATTGTCCAAGTTTGAGCAAAAGGTGCCAAAAGGGAACAGGAGAAGATTGGCCCAAGATCGCACATATCCCTAAAATCAAGGTTGATG ATGATGACAGTGGTGAAGAAACATCTGGTTAG
AA sequence Show only first row Show all	>Potri.017G143700.2 pacid=42813463 polypeptide=Potri.017G143700.2.p locus=Potri.017G143700 ID=Potri.017G143700.2.v4.1 annot-version=v4.1 MAEAFASEIAKSLLGKLGSFAVQEFRLAWGLEDDLARLEERLKAINAVLSDAEKQQSKNDRIRLWLHMLKQVLYDAEDVLDEIECETLRREVVKTTGSTS RKVRRFFSSSNKIAFRLRMGHKIKSIIERLAEISSLKSDFNLSEQGIDCSHVLHEETGMNRPFDSFSGLIGRDKDKERIINLLAEPFKVGDAHPLVLPIV GMGGLGKTSLAKSVCDAENVKCHFELKMEACVSDDFSLKHVIQRIIKSATGERCADLDEGELNKKLEEIVKGKKYLLLLDDVWNEDAQKWLLLKPSLSKG ADGSKIIVTTRIKRVAEIMGTVTAYYLSLLGQEACLSLFYKCAFKEGQMELYPNLVGIGKEIVAKCKQVPLAVINLGTQLYGKTDEKEWESVRDSEKWEE EGDRILPALKISYQRLPTHLKRCFLYCSVFPKDYPFYDISLVHFWMAQGLILPSSNPNEKLEDVGLRYVRELMSRCFFQDYEDWDYVAFFKMHDLMHDLA LSLSQSECSIIGSQNHQISKTTRHLSVLDSDSFFHKTLPKFSNEFHHVRSIVFVDSIMGPTCKADFKKCLSEFKHLRCLELMDDSEFEVFPERIGALKHL RYLKYRSNANMKRHPKSLFKLQNLQALVTGFGLEELPKDVRYMISLKFLSLATQLKRLPEKGIGCLECLQTLFIVGCENLENLCEDMEGLKSLRKLLISS CESLISLPRSIKCLTTLEGFFINNCKKLDLMTIEEEKEKKIQPLFLSLRIVLFASLPATLALPEQFLQGSAESLQTLIITDCPNIREMPDCIDNLKKLQN LEVIDCPSLSKRCQKGTGEDWPKIAHIPKIKVDDDDSGEETSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.017G143700 [exp]	0	1
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.016G099200 [exp]	3.87	0.9646
AT3G14470			NB-ARC domain-containing disea...		Potri.017G143433 [exp]	4.89	0.9499
AT1G75170			Sec14p-like phosphatidylinosit...		Potri.007G025900 [exp]	6.32	0.9608
AT1G24430			HXXXD-type acyl-transferase fa...		Potri.010G053800 [exp]	10.58	0.9470
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G193200 [exp]	11.95	0.9368
AT5G49520	WRKY	ATWRKY48, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.008G103300 [exp]	12.00	0.9146
AT5G10970	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.018G021400 [exp]	12.48	0.9361
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.008G054900 [exp]	13.41	0.9332	HSP70.7
AT3G45070			P-loop containing nucleoside t...		Potri.010G138450 [exp]	14.28	0.9330
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.007G024400 [exp]	14.69	0.9458

Compare expression of checked genes

Potri.017G143700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.