Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17300 200 / 2e-59 MYB RVE1 REVEILLE 1, Homeodomain-like superfamily protein (.1) AT5G37260 149 / 2e-41 MYB RVE2, CIR1 REVEILLE 2, CIRCADIAN 1, Homeodomain-like superfamily protein (.1) AT1G18330 134 / 4e-35 MYB RVE7, EPR1 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) AT3G10113 128 / 3e-33 MYB Homeodomain-like superfamily protein (.1) AT1G01060 123 / 8e-30 MYB LHY, LHY1 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) AT2G46830 122 / 9e-30 MYB AtCCA1, CCA1 circadian clock associated 1 (.1.2) AT3G09600 98 / 1e-22 MYB LCL5 (LHY-CCA1-LIKE5), REVEILLE 8 (RVE8) REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) AT5G52660 97 / 3e-22 MYB Homeodomain-like superfamily protein (.1.2) AT4G01280 95 / 2e-21 MYB Homeodomain-like superfamily protein (.1.2) AT1G01520 93 / 6e-21 MYB ASG4 ALTERED SEED GERMINATION 4, Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G074300 [exp] 710 / 0 AT5G17300 218 / 5e-66 REVEILLE 1, Homeodomain-like superfamily protein (.1) Potri.012G038300 [exp] 238 / 1e-72 AT1G18330 158 / 5e-44 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.015G030400 [exp] 202 / 4e-59 AT1G18330 170 / 1e-48 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.014G106800 [exp] 128 / 2e-31 AT1G01060 378 / 3e-121 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Potri.002G180800 [exp] 128 / 2e-31 AT1G01060 369 / 1e-117 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Potri.006G133000 [exp] 98 / 2e-22 AT3G09600 379 / 1e-132 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.016G083900 [exp] 97 / 3e-22 AT3G09600 375 / 4e-131 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.002G163100 [exp] 97 / 6e-22 AT4G01280 266 / 1e-87 Homeodomain-like superfamily protein (.1.2) Potri.017G146800 [exp] 96 / 7e-22 AT5G52660 303 / 3e-102 Homeodomain-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031893 [exp] 178 / 8e-51 AT3G10113 207 / 2e-63 Homeodomain-like superfamily protein (.1) Lus10042292 [exp] 177 / 2e-50 AT1G18330 198 / 5e-60 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10026365 [exp] 171 / 4e-48 AT1G18330 193 / 6e-58 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10031322 [exp] 171 / 6e-48 AT1G18330 199 / 4e-60 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10030184 [exp] 125 / 2e-31 AT1G01060 247 / 2e-75 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Lus10005134 [exp] 123 / 1e-29 AT1G01060 377 / 5e-121 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Lus10010100 [exp] 120 / 8e-29 AT1G01060 399 / 4e-130 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Lus10036392 [exp] 100 / 4e-23 AT5G52660 306 / 5e-103 Homeodomain-like superfamily protein (.1.2) Lus10007914 [exp] 100 / 5e-23 AT5G52660 301 / 8e-101 Homeodomain-like superfamily protein (.1.2) Lus10027521 [exp] 98 / 1e-22 AT5G52660 353 / 1e-122 Homeodomain-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.017G144800.1 pacid=42814104 polypeptide=Potri.017G144800.1.p locus=Potri.017G144800 ID=Potri.017G144800.1.v4.1 annot-version=v4.1 ATGGCTATTCAGGATCAGTGTGGAGGGACTCGATCAAATCTGGTTCTCCCAGCAGGCAATGGAATTTTACCGAGTGCTACACTACAGAAGGCAACTGACC ACCAACTAAAGGAGCAGTTCTCTTGTGGGAGTGATTACTCTCCCAAGGCGAGGAAACCTTACACAATTACGAAACAAAGAGAGAGATGGACAGAGGAAGA GCATAAGAAGTTCCTTGATGCTCTAAAGCTTTACGGCCGTGCTTGGAGACGGATTGAAGAGCATTTAGGCACAAAGACTGCAGTTCAGATTCGAAGCCAT GCTCAGAAATTCTTCTCTAAGGTTGCGCGTGAATCTGGTGGCAGCAACACTAGCTCAGAGGAACCAATTGAAATTCCTCCTCCCAGACCAAAAAGAAAAC CTATGCATCCTTACCCTCGCAAATTGGCACATCCGCTGGAAAGAGATCTTCTAATTCTTGAGAATCCGCTAAGGTCTTCATCTCCAAATTTTTCCATTTC AGAACAAGAAAACCAATCTCCTACATCGGTATTGTCTGCGGTTGGTTCAGATGCCCTTGGTTCCACTGACTCAGACATGCCAAGCCATAGCTTATCACCA GTTTCATCTGCTGGTGGTGTGCGTCATGTTGATTCGTCACCTGAAGACAATGGATCTCCATCACCACCAACTGCTAGCTCAGCTCCTGACGAGCAATTTC CCAAGGTCCAGAAACTTGACTCATTTCCCAAAGAAAATGTCTCTTCTGAAGAACCCATTACTCTCAAGCTCTTTGGAAGGACACTATTAGTCACAGAATG CCATAAACCATCTTATCCAAACATGGGGACTTCTAAATTGTCGCTGCCAGATGCCACTGAAGAGAAACTTGTGCAACCATTAACACTGAACATCACAGCT GCAAAATTGCAGTCCAGGAATGAGGAATCCACTTGGAGCCCGCTGCCTCATGGATCTCATGGAGCATTATATCAAATACAATTTAAAAAGGAAAACTCAA GTCCCACAGAAAACGACTCTGCTGCTCTAATGCCTTGGTGGGGTTCTTATGAAGGCATGCCATTTCCTTTCATACCATTTCACAAGCATGAGCCTGCGGT GGAAAATTTAGATTCAAATGGAGATGAAGTCCAAGATAAAGAGATTCACAAGGAAGTATCTTGGACTGGTTCCAACTCCGGATCAGTGAATGAAGGGGAA AATGTTGATAAAATTATGGATGCTGAGACTGAAAGTCACCAATTTTCTTACGAGGAAAAAGAGCCATCTCCATTTTTGGAGCTTAAGCCAAAGAAGAAAT CAGCCTCATCTGGATCAAAAGCATTCAATGAAAAGTGCACGAAAGGGTTTGTGCCTTATAAGAAACGGACTGCAGAAAGAGACAGTCAATCCTCAACAAT AACCGGCGAAGAGAGGGAAGAGCAAAGAATCCGCCTTTGCCTGTAG
AA sequence Show only first row Show all	>Potri.017G144800.1 pacid=42814104 polypeptide=Potri.017G144800.1.p locus=Potri.017G144800 ID=Potri.017G144800.1.v4.1 annot-version=v4.1 MAIQDQCGGTRSNLVLPAGNGILPSATLQKATDHQLKEQFSCGSDYSPKARKPYTITKQRERWTEEEHKKFLDALKLYGRAWRRIEEHLGTKTAVQIRSH AQKFFSKVARESGGSNTSSEEPIEIPPPRPKRKPMHPYPRKLAHPLERDLLILENPLRSSSPNFSISEQENQSPTSVLSAVGSDALGSTDSDMPSHSLSP VSSAGGVRHVDSSPEDNGSPSPPTASSAPDEQFPKVQKLDSFPKENVSSEEPITLKLFGRTLLVTECHKPSYPNMGTSKLSLPDATEEKLVQPLTLNITA AKLQSRNEESTWSPLPHGSHGALYQIQFKKENSSPTENDSAALMPWWGSYEGMPFPFIPFHKHEPAVENLDSNGDEVQDKEIHKEVSWTGSNSGSVNEGE NVDKIMDAETESHQFSYEEKEPSPFLELKPKKKSASSGSKAFNEKCTKGFVPYKKRTAERDSQSSTITGEEREEQRIRLCL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17300	MYB	RVE1	REVEILLE 1, Homeodomain-like s...		Potri.017G144800 [exp]	0	1
AT5G17300	MYB	RVE1	REVEILLE 1, Homeodomain-like s...		Potri.004G074300 [exp]	3.31	0.7951
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Potri.005G179600 [exp]	24.49	0.7814
AT1G22180			Sec14p-like phosphatidylinosit...		Potri.013G068700 [exp]	30.00	0.7436
AT1G21830			unknown protein		Potri.005G177600 [exp]	33.22	0.7405
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Potri.007G056200 [exp]	33.57	0.7517
AT5G18670		BAM9, BMY3	BETA-AMYLASE 9, beta-amylase 3...		Potri.008G204200 [exp]	33.98	0.7370
AT4G35290		ATGLUR2, ATGLR3...	GLUTAMATE RECEPTOR 3.2, glutam...		Potri.009G168300 [exp]	36.27	0.7431	Pt-GLUR2.1
AT3G14470			NB-ARC domain-containing disea...		Potri.001G379601 [exp]	36.67	0.6497
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Potri.004G158900 [exp]	37.82	0.7277	Pt-SAE2.1
AT5G57660	CO	COL5, ATCOL5	CONSTANS-like 5 (.1)		Potri.018G096084 [exp]	42.08	0.7367

Compare expression of checked genes

Potri.017G144800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.