Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 456 / 2e-139 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 368 / 2e-105 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 153 / 2e-37 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT3G46730 134 / 2e-31 NB-ARC domain-containing disease resistance protein (.1) AT3G07040 127 / 2e-29 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT4G27220 123 / 5e-28 NB-ARC domain-containing disease resistance protein (.1) AT1G58390 118 / 2e-26 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G48620 117 / 3e-26 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58410 114 / 4e-25 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46710 110 / 5e-24 NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G137101 [exp] 645 / 0 AT3G14470 616 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G029300 [exp] 632 / 0 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G055600 [exp] 627 / 0 AT3G14470 615 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G015600 [exp] 596 / 0 AT3G14470 591 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200800 [exp] 561 / 6e-176 AT3G14460 509 / 7e-157 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.017G015300 [exp] 561 / 8e-175 AT3G14470 572 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126806 [exp] 545 / 2e-170 AT3G14470 587 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200200 [exp] 533 / 2e-166 AT3G14470 634 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G015200 [exp] 538 / 6e-166 AT3G14470 559 / 5e-178 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039509 [exp] 621 / 0 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 572 / 0 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 572 / 9e-180 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10024173 [exp] 525 / 6e-163 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005321 [exp] 426 / 6e-126 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 416 / 1e-122 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 409 / 4e-119 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10016316 [exp] 328 / 8e-93 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 282 / 9e-78 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10011278 [exp] 253 / 1e-68 AT3G14470 356 / 1e-105 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.017G145000.3 pacid=42814629 polypeptide=Potri.017G145000.3.p locus=Potri.017G145000 ID=Potri.017G145000.3.v4.1 annot-version=v4.1 ATGGCCTTTCTAGGTGAGATTGGATCAGCATTTCTCAAAAGTGCTGTTGATCTTTTGGTCCATAAGTTTAATTCTCCTGAGGTTCAGCGGTTCTTTCAAC GCCAGAAGCTGCTTGAAGGACGACTCCCATTCAAGTTGACAACAAGTTTGAAATCCGTCAACAGCATACTCCTTGATGCAGAGAGGAAGCAGACCACCAA GGAAGGTGTAAAGGATTGGCTCGATGATGTTCAGCATGTTGTTCATGAAGCTGAGGACTTGGTGGACGTGATTTCTTGTCAAGCTCGAGGATCAAAGTTG AAACCTGGCTATTTTAACACCGAGGACGAAATTATAAACAACTTGAAAGATATTCTTGAGAGACTAAGAGGGCTAGAGGAAAGGGCTCGTACACTCTGTC TGATAAAGAGTTTTAAGGGAAGCCTCCCATGCTTGAGCTTTGTGGAAGCTGAGTTTGGATCAGAATTTCTCAGCAGTACTATTGTTCTCTTGGTCCAGCA GTTGGGTTCTCCGATTGAATTTCGAGGTTCCTTCAGACGCCAAATTCTCATCGAAGGACTCTTCGAGAAGTTGAAGGAACCTTTGAATACTATCAAGATC ATGCTCCCTGAGGCTGAGACAAAGCAGATCACCAATGAAGACGTGAAGAATTGGCTTCAACAAGCTACAGATGCCGTGTATGAAGCTGGAAATTTGCTGG ACGAGATTGTTCATGAAGCTAGACGAGCAGAATTGAAATCCAGCTCTCAAAGCTATCTAGATAAGATCGAGAACGTTTTCACCTCTCTTTGTACTTCTAA CGAAAACAATAAGGAAGGGACAATGGTAGAAAACTCAGTCAAGATTTTTGAAAAGCTTGAAATGTTGGCAAAAGAAGGGGAGAACCGCCACAATCTTCTA CGGAGTGATGGACATTCATATATTGATAATGGTGTTTATGGCAGGGACTATGATAAAGAAACCATAATGCCCTTGCTGCTATCAGAAGATGCAAAAGGTA AAAGCTTAGAAGCAATTGTTTTAGAGGGTATTGGCGGTATTGGTAAAACCACCTTTGCTAAGCTTGTCTACCTTGATATGAAGGTACAGGAGTGCTTTGA TCTGAAAGCATGGGTCTACGTCTCGCAAGAATTTGATGCTGTCAGGATAGTAGTAGATATTCTGAAGAATATTGGTTCATTCAGAGGTGTTACCATGGAT GCAAATGAGCTTCAAAAGGAGCTTAAGAAAAGATTGACAAGAAAGAAATTATTGCTTGTATTAGATGAAGTTTGGAAGGCAGATGATCAGCATGCTCAAT GGAATTTCTTAGTCACAGCTTTGGAATCTGCAGCAAAGGGGAGCAAGATCATCATTACAACACGAGAGATGAGTCCTACTGTAGCATCAGTCCTGCCATC TGTTACACCTTTTAATTTGAAGGAAATAAGCGATGCTGATTGCTGGGCCTTGTTTTTAGAACATGCTTTTTGTGGTGAAGAAAGCCAGGCTCGTTTGTCA TTTGATATAAATTTCCGTTCGAAAGTATTGGGAAGGTGCGGTGGCATACCTCTACGTGCAAAAATGATTGGGAATCACCTTCGGTGCAAACCAGATTTGT ACTGGGAGGAAATATCGAGTAGGTGGGATCTTCAACCGGTCATTATTCCTGCTACTATGAAATTAAGGTATTATAGATTTCCTTCAAATCTTAAACAATG CTTTGTTTACTGCTCACTCTTTCCTAAGGATCATTCATTTAAAAGGGAGACAATTGTACTTTTATGGCTGGCTAATGGTTTTCTAGGAGGGGATAAGGGG AAGAAAGAAGTAGGATACGGGTACTTTCAAAAACTTGTAGCCTACTCTTTTTTTCAACAAAAAAATGACGATACATCAGCCTTTGTTATGAATGACCTGG TACACAGTTGGGCGAAATTTTTACGTGGAGATTTTTCTGTCAGTTTGGATGATGGTGATTCACATATTTTTAGCAAAGCTCGTCACTTATGGTGTGGTAG CAAAAGGGGATATGAAGACCTAAAGAATCTTGTGGGCGATGGATTTCACAGTTTCCGTACCATTTTGCCACCATCAAATGAGTCCTTTTGGGGAGATGTT AATGATGAGAAACTCAAGGCATTCAATCGCCTACGGGTATTGTCTTTGTCTAACATAAATCAGTTGCCTGATGTATTTTGCTGGCTGAAACACCTACGAC ATCTTGAAATCTCTGGAGAATCAATAAAAAGTTTACCTGAAACTTTGTGTATGACGTTCACTTTGCAAACATTAATCTTGCGCCAGTGCCCAAATCTAGC TGAGTTACCAGCCAACATTGTGAAGTTAACTGAACTGTGTCATCTTGATATTAGAGAAACAGGATTGCAACAGACGCCACCACAAATGGGCAAACTAACA GAGCTTGAAACGTTGACTGATTTTTTTGTGGGACAACAAAATGGGTGCAGAATTGATGAGCTAGGAGAGCTTAGATATCTACTGGGAGAACTTCGTATTT GGAACCTTCAAAATGTTTCTCATGGTCTAAATGCTTCTGAAGCCAATTTGAAGGGCAAGGATCTTAAGAAGTTAGAGTTAAGATGGAGTGGCAGGAGGGA TACTGACGATTCTTTAACTGAAGAAGATGTACTTGAAGCATTGTGGCCTAGTGCAAAAGTGGAAGATCTTTCTATAATCGGTTACGGAGGTAAAAACCTT CCAGGATGGGTAGGACACACTTCTTTCGAAAAAATGGTCGATCTGAGGCTTAGTGGATGTAAATACTGTGTCTCTTTACCATCTCTTGGTCAGTTAGAAT CTCTAAAAACGCTGTTGATTGAAGACTTTTATAATCTAGAGTATGTTGGTGATGAGTTCTATGGAAGTCCCACCACCGAAGGGAATCCATTCCAATCCCT TGAAAGCCTAACTTTTGAGAGGATGCTACAATGGCGTGAATGGAAATCTAAAGGCAGAGCTTTCAGAAGCCTTCAAGTGCTTTGCATCAGAAAGTGTCCA AGCCTAACAACACTGCCCAGCGACCTTCCTTCTTTAGTGGAGCTTGAGATTGCAAAGTGTAAGCTTGTGGGTCCACCTTCTGGCTGGTCTCCTGCACCCA TCAGTAAAATAATTCTCGCTAATGATTTTCATAAGGTGCAATTAGAGAAATTGTCTTCTGACTCGCAAAGTCTCACAGTCGATTCATTCCATGCCTTCGA TTTTATACGTCAGGAAATTGAAGAGTGGGGTTATGCTTGCTCTACTTTACAAAAAATTGACATCACTCGCTATCCCCTCGAGTTCTTCCCACTAAATCTT TTCCCCCAGTTAAAGCAACTTGAGATCAGCAGGTGTCCAAAGCTCAAATCCCTTTGTGGACCAGAGGAACTTCTTGGTGATTCCATGTCTACCGAATCCT TTTGCAGTGGCTGTCCGACTTTGGAAACCCTTGCATTATCAAATTGCTCAAATTTTGAATCATTGTTTTGCTCCCTCCCTTCCCTTGTGAATCTAAAAAT AGTTTCTTGTGGGAAACTTCAGTCATTGCCTGGGATGGATTTCTCCGCTTCATCAGAACCGCTTGCTGGCAACAGTAATTGGAATTCGGAAGCCTGCATG TACCCAGAATTGAAAATTCTTTCACTAGAACGTTGCTCAAATTTTGAATCATTGTTCTGCTCCCTACCTTCCCTAGTGAATCTAAAAATAGTTGCTTGTG GGAAACTTCAGTCATTTCCTGGGATGGATTTCTCCGCTTCATTAGAACCGCTTGCTGGCAACAGTAATTGGAATTCGGAAGTCTGCGAGTACCCCAATTT GAAACTTCTTTCACTGGAACATTGTTCAAATTTGAAAACAGTGCATTGCCTCCTCCCTTCTCTTGAGAATCTGGAATTATATAATTGTGGTCAACTTGAG CCATTTCTCGGAATGGGCTTGTCTTCATCTTTTGGATTGAGTTCGCCTTCCAAATTAAAATCACTAGTGATCCGAGGATGCAGAAAACTCCTTGCTGGCT GCGACAAATGGGGTATGGGTAGATTCCCTTCTCTTTCAACCTTATCATTAGATTACAGTGATGAAGTGGAATGCTCCCTCAAGCAACGTACGTTCCTCCC CGCGCCGTTCACATTTCTTTCAATCTGTGATCTTCCAAATCTGACGTCTCTGGAACTTCAAGGGTTCACGTTCCTTTATGGACTCGAACTCGAAGACTGC CCTAAGCTCCAATCCTTGTCAGAAGGCAGCCTGCCTTATGATCTCTTCTCTCTGCACATCAGGTCATGTCCCTTGATGGAACAGAGGTGTCAACAGGATA CAGGGGAAGACTGGCCCAAGATATCTCATGTCCCCAATATAAAGATTGGTTACCACAATTTCAATGTGAAGAGCAGGAGATTGTAA
AA sequence Show only first row Show all	>Potri.017G145000.3 pacid=42814629 polypeptide=Potri.017G145000.3.p locus=Potri.017G145000 ID=Potri.017G145000.3.v4.1 annot-version=v4.1 MAFLGEIGSAFLKSAVDLLVHKFNSPEVQRFFQRQKLLEGRLPFKLTTSLKSVNSILLDAERKQTTKEGVKDWLDDVQHVVHEAEDLVDVISCQARGSKL KPGYFNTEDEIINNLKDILERLRGLEERARTLCLIKSFKGSLPCLSFVEAEFGSEFLSSTIVLLVQQLGSPIEFRGSFRRQILIEGLFEKLKEPLNTIKI MLPEAETKQITNEDVKNWLQQATDAVYEAGNLLDEIVHEARRAELKSSSQSYLDKIENVFTSLCTSNENNKEGTMVENSVKIFEKLEMLAKEGENRHNLL RSDGHSYIDNGVYGRDYDKETIMPLLLSEDAKGKSLEAIVLEGIGGIGKTTFAKLVYLDMKVQECFDLKAWVYVSQEFDAVRIVVDILKNIGSFRGVTMD ANELQKELKKRLTRKKLLLVLDEVWKADDQHAQWNFLVTALESAAKGSKIIITTREMSPTVASVLPSVTPFNLKEISDADCWALFLEHAFCGEESQARLS FDINFRSKVLGRCGGIPLRAKMIGNHLRCKPDLYWEEISSRWDLQPVIIPATMKLRYYRFPSNLKQCFVYCSLFPKDHSFKRETIVLLWLANGFLGGDKG KKEVGYGYFQKLVAYSFFQQKNDDTSAFVMNDLVHSWAKFLRGDFSVSLDDGDSHIFSKARHLWCGSKRGYEDLKNLVGDGFHSFRTILPPSNESFWGDV NDEKLKAFNRLRVLSLSNINQLPDVFCWLKHLRHLEISGESIKSLPETLCMTFTLQTLILRQCPNLAELPANIVKLTELCHLDIRETGLQQTPPQMGKLT ELETLTDFFVGQQNGCRIDELGELRYLLGELRIWNLQNVSHGLNASEANLKGKDLKKLELRWSGRRDTDDSLTEEDVLEALWPSAKVEDLSIIGYGGKNL PGWVGHTSFEKMVDLRLSGCKYCVSLPSLGQLESLKTLLIEDFYNLEYVGDEFYGSPTTEGNPFQSLESLTFERMLQWREWKSKGRAFRSLQVLCIRKCP SLTTLPSDLPSLVELEIAKCKLVGPPSGWSPAPISKIILANDFHKVQLEKLSSDSQSLTVDSFHAFDFIRQEIEEWGYACSTLQKIDITRYPLEFFPLNL FPQLKQLEISRCPKLKSLCGPEELLGDSMSTESFCSGCPTLETLALSNCSNFESLFCSLPSLVNLKIVSCGKLQSLPGMDFSASSEPLAGNSNWNSEACM YPELKILSLERCSNFESLFCSLPSLVNLKIVACGKLQSFPGMDFSASLEPLAGNSNWNSEVCEYPNLKLLSLEHCSNLKTVHCLLPSLENLELYNCGQLE PFLGMGLSSSFGLSSPSKLKSLVIRGCRKLLAGCDKWGMGRFPSLSTLSLDYSDEVECSLKQRTFLPAPFTFLSICDLPNLTSLELQGFTFLYGLELEDC PKLQSLSEGSLPYDLFSLHIRSCPLMEQRCQQDTGEDWPKISHVPNIKIGYHNFNVKSRRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.017G145000 [exp]	0	1
AT5G58770			Undecaprenyl pyrophosphate syn...		Potri.009G045500 [exp]	1.00	0.9634
AT3G10130			SOUL heme-binding family prote...		Potri.016G098500 [exp]	4.24	0.9580
AT1G51550			Kelch repeat-containing F-box ...		Potri.010G252200 [exp]	6.00	0.9486
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Potri.012G095800 [exp]	7.74	0.9503
AT1G03670			ankyrin repeat family protein ...		Potri.018G077766 [exp]	8.94	0.9500
AT2G29630		PY, THIC	PYRIMIDINE REQUIRING, thiaminC...		Potri.009G043200 [exp]	8.94	0.9502
					Potri.001G341700 [exp]	9.32	0.9303
AT5G37360			unknown protein		Potri.019G023700 [exp]	10.24	0.9402
AT5G12950			Putative glycosyl hydrolase of...		Potri.003G206000 [exp]	10.58	0.9404
AT5G59750			DHBP synthase RibB-like alpha/...		Potri.001G234900 [exp]	11.22	0.9480

Compare expression of checked genes

Potri.017G145000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.