Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52660 302 / 4e-102 MYB Homeodomain-like superfamily protein (.1.2) AT4G01280 238 / 4e-77 MYB Homeodomain-like superfamily protein (.1.2) AT1G01520 234 / 5e-76 MYB ASG4 ALTERED SEED GERMINATION 4, Homeodomain-like superfamily protein (.1) AT3G09600 216 / 9e-69 MYB LCL5 (LHY-CCA1-LIKE5), REVEILLE 8 (RVE8) REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) AT5G02840 212 / 2e-67 MYB LCL1 LHY/CCA1-like 1 (.1.2.3) AT5G37260 99 / 9e-24 MYB RVE2, CIR1 REVEILLE 2, CIRCADIAN 1, Homeodomain-like superfamily protein (.1) AT5G17300 99 / 2e-23 MYB RVE1 REVEILLE 1, Homeodomain-like superfamily protein (.1) AT1G01060 99 / 8e-23 MYB LHY, LHY1 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) AT1G18330 96 / 2e-22 MYB RVE7, EPR1 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) AT3G10113 96 / 2e-22 MYB Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G073300 [exp] 451 / 9e-161 AT5G52660 298 / 2e-100 Homeodomain-like superfamily protein (.1.2) Potri.002G163100 [exp] 301 / 3e-101 AT4G01280 266 / 1e-87 Homeodomain-like superfamily protein (.1.2) Potri.014G089300 [exp] 300 / 7e-101 AT4G01280 293 / 2e-98 Homeodomain-like superfamily protein (.1.2) Potri.006G133000 [exp] 244 / 3e-79 AT3G09600 379 / 1e-132 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.016G083900 [exp] 220 / 9e-70 AT3G09600 375 / 4e-131 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.012G038300 [exp] 99 / 6e-23 AT1G18330 158 / 5e-44 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.014G106800 [exp] 99 / 1e-22 AT1G01060 378 / 3e-121 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Potri.002G180800 [exp] 98 / 1e-22 AT1G01060 369 / 1e-117 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Potri.015G030400 [exp] 98 / 1e-22 AT1G18330 170 / 1e-48 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027521 [exp] 334 / 6e-115 AT5G52660 353 / 1e-122 Homeodomain-like superfamily protein (.1.2) Lus10039284 [exp] 320 / 5e-108 AT5G52660 350 / 9e-120 Homeodomain-like superfamily protein (.1.2) Lus10038846 [exp] 297 / 1e-98 AT5G52660 292 / 2e-96 Homeodomain-like superfamily protein (.1.2) Lus10007914 [exp] 282 / 1e-93 AT5G52660 301 / 8e-101 Homeodomain-like superfamily protein (.1.2) Lus10036392 [exp] 268 / 3e-88 AT5G52660 306 / 5e-103 Homeodomain-like superfamily protein (.1.2) Lus10019902 [exp] 207 / 3e-64 AT3G09600 351 / 9e-121 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Lus10014966 [exp] 144 / 6e-41 AT4G25740 216 / 5e-71 RNA binding Plectin/S10 domain-containing protein (.1.2) Lus10014015 [exp] 136 / 1e-36 AT3G09600 317 / 3e-106 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Lus10031322 [exp] 100 / 1e-23 AT1G18330 199 / 4e-60 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10031893 [exp] 98 / 1e-22 AT3G10113 207 / 2e-63 Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.017G146800.2 pacid=42813976 polypeptide=Potri.017G146800.2.p locus=Potri.017G146800 ID=Potri.017G146800.2.v4.1 annot-version=v4.1 ATGGTATCAAAAAACCCGAACCCGGCTGACGGATTCTACCTGGATCCAAACGGAATGGCTGCATTACCTGGACTCTCAACGTTCCCTACAACAACGACGA CGACGGCGTCAGATTCTTCATCGGAGGATCCGAGTAAGAAGATCCGAAAACCGTACACGATTACCAAATCCAGAGAGAGTTGGACTGAGCCGGAACATGA CAAGTTCCTTGAAGCTCTTCAGCTGTTTGACAGAGATTGGAAAAAGATTGAAGCTTTTATTGGCTCAAAAACTGTTATTCAGATACGAAGTCATGCGCAG AAGTACTTTTTAAAGGTTCAGAAGAGCGGAACGAGCGAACATTTGCCTCCACCACGGCCTAAAAGGAAGGCTGCTCATCCATATCCTCAAAAAGCTTCAA AAAATGCTGTGGTGCTTTCACAACCATCAGGATCATCTCACTCATCCTCTGCTCCCCTTGAATCTGGATGTGCTTTAAGGCCTGATTCGTCTTCAATACC TATGAACCCCATTGTAAGTGCTGCTGCTGCATCTTCTTGGACAAACAATGTGCCGACTGTCAGTGTATCAAACCAAACAACAGGAGCATTAGTGGCTAAT AATTGTTGCAGTAGCAGTGAGAGTACTCCAAGAACAAAACCAGTTGGGAAAACAGCTGAGAAAGGGAATCATGGCCAATCAATGAGAGTGCTGCCTGACT TTGCTCAGGTATATGGCTTCATTGGTAGTGTCTTCGACCCAAATGTTACTGGTCATTTGCATAACCTTAAGAAAATGGACCCTATAGATGTTGAAACGGT GCTATTGCTGATGAGAAACCTCGCAATCAATCTTACCAGCCCCAGTTTTGAGGAACATAGAAAGTTGCTCTCTTCCAATGAGATGGACTCGGAAGCCATG GGTGTAAACAAGAATGTTGATCAACCAATGGATGTTGCTTAA
AA sequence Show only first row Show all	>Potri.017G146800.2 pacid=42813976 polypeptide=Potri.017G146800.2.p locus=Potri.017G146800 ID=Potri.017G146800.2.v4.1 annot-version=v4.1 MVSKNPNPADGFYLDPNGMAALPGLSTFPTTTTTTASDSSSEDPSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQ KYFLKVQKSGTSEHLPPPRPKRKAAHPYPQKASKNAVVLSQPSGSSHSSSAPLESGCALRPDSSSIPMNPIVSAAAASSWTNNVPTVSVSNQTTGALVAN NCCSSSESTPRTKPVGKTAEKGNHGQSMRVLPDFAQVYGFIGSVFDPNVTGHLHNLKKMDPIDVETVLLLMRNLAINLTSPSFEEHRKLLSSNEMDSEAM GVNKNVDQPMDVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52660	MYB		Homeodomain-like superfamily p...		Potri.017G146800 [exp]	0	1
AT5G58870		FTSH9	FTSH protease 9 (.1)		Potri.001G249100 [exp]	1.41	0.9460
AT5G24470		APRR5	pseudo-response regulator 5 (....		Potri.012G005900 [exp]	2.44	0.9361
AT2G05810			ARM repeat superfamily protein...		Potri.014G158700 [exp]	5.91	0.9203
AT3G52105			unknown protein		Potri.006G054200 [exp]	6.92	0.9296
AT1G67970	HSF	AT-HSFA8	heat shock transcription facto...		Potri.008G136800 [exp]	8.00	0.9172	Pt-HSF5.2
AT2G38970			Zinc finger (C3HC4-type RING f...		Potri.001G082150 [exp]	8.48	0.9212
AT1G13940			Plant protein of unknown funct...		Potri.006G262600 [exp]	9.16	0.9350
AT1G31350		KUF1	KAR-UP F-box 1 (.1)		Potri.009G024000 [exp]	10.95	0.9123
AT5G53350		CLPX	CLP protease regulatory subuni...		Potri.015G012900 [exp]	12.04	0.9222
AT3G17970		ATTOC64-III	translocon at the outer membra...		Potri.012G046900 [exp]	13.41	0.8993	TOC64.1

Compare expression of checked genes

Potri.017G146800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.