Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31600 447 / 3e-159 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) AT4G32272 90 / 4e-20 Nucleotide/sugar transporter family protein (.1.2) AT3G17430 43 / 0.0002 Nucleotide-sugar transporter family protein (.1) AT5G19980 41 / 0.0007 GONST4 golgi nucleotide sugar transporter 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G270700 [exp] 497 / 9e-179 AT4G31600 450 / 3e-160 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.006G255400 [exp] 87 / 3e-19 AT4G32272 438 / 1e-154 Nucleotide/sugar transporter family protein (.1.2) Potri.018G026600 [exp] 83 / 1e-17 AT4G32272 493 / 2e-176 Nucleotide/sugar transporter family protein (.1.2) Potri.018G127400 [exp] 82 / 1e-17 AT4G32272 431 / 4e-152 Nucleotide/sugar transporter family protein (.1.2) Potri.008G214300 [exp] 43 / 0.0002 AT3G17430 569 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.018G071700 [exp] 42 / 0.0003 AT5G19980 484 / 6e-173 golgi nucleotide sugar transporter 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020119 [exp] 434 / 7e-154 AT4G31600 530 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Lus10026922 [exp] 427 / 3e-151 AT4G31600 517 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Lus10038090 [exp] 82 / 1e-17 AT4G32272 410 / 1e-144 Nucleotide/sugar transporter family protein (.1.2) Lus10006645 [exp] 52 / 3e-07 AT4G32272 359 / 2e-123 Nucleotide/sugar transporter family protein (.1.2) Lus10033058 [exp] 49 / 2e-06 AT5G19980 492 / 2e-176 golgi nucleotide sugar transporter 4 (.1) Lus10017759 [exp] 47 / 8e-06 AT5G19980 495 / 2e-177 golgi nucleotide sugar transporter 4 (.1) Lus10018339 [exp] 47 / 1e-05 AT3G17430 615 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10017141 [exp] 46 / 2e-05 AT5G19980 489 / 4e-175 golgi nucleotide sugar transporter 4 (.1) Lus10018311 [exp] 45 / 3e-05 AT5G19980 478 / 8e-171 golgi nucleotide sugar transporter 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF03151 [poplar] [flax] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Potri.018G009400.1 pacid=42801996 polypeptide=Potri.018G009400.1.p locus=Potri.018G009400 ID=Potri.018G009400.1.v4.1 annot-version=v4.1 ATGGAGAATCGCAGTGAAGCAGAAGCAAGTCCTTATAAGAGTTTGGTTGCGGCTGTATCATATGGGATTGCTTCAATGGCTATGGTTTTTATCAATAAGG CCATTTTGATGCAATATGGTCACTCAATGACCCTTCTCACTCTGCAGCAACTGGCGACAGCATTGCTTATACATTTTGGTAGGCAAATGGGGTATACGAG ATCAAGGGGAGTAGATATGCAAACAGCTAAAAAACTTCTCCCGGTTTCACTATTCTACAATGCTAATGTGGCATTTGCTTTGGCTAGCTTGAAAGGAGTT AATATTCCTATGTATATTGCAATAAAGAGACTCACACCACTTGCGGTACTTATAGCTGGATTTTCTTCAGGAAAGGGAAAACCTACAACACAGGTTACTC TCTCTGTGCTATTAATTGCTGCTGGAGTTATTATAGCAGCACTTGGAGATTTTTCTTTTGACCTTTGGGGTTACGGCATGGCCCTCACTTCTGTTTTCTT TCAGACAATGTACCTTGTGTTAGTTGAAAGATCTGGTGCAGAGGATGGCCTCTCTTCTATTGAGATAATGTTCTATAACAGTTTTCTTTCTCTTCCATTC TTGATATTTCTCATCATAGCAACAGGAGAATTTCCAAACTCTCTAGCATTATTGTTTGCAAAGAGTAATTCTTTATCATTTTTGGTGATCCTTGTTATTT CTTTAGTAATGGGCATAGTTCTCAACTTCACCATGTTCCTATGTACCATAGTCAACTCAGCTCTAACAACAACCATCGTGGGAGTTCTCAAAGGTGTTGG GTCCACGACCCTTGGTTTTGTCGTACTGGGTGGCGTGGAAGTCCATGCTTTGAATGTGACTGGATTGGTTATCAACACAACTGGTGGGGTGTGGTACTCA TATGCCAAATACCAGCAGAAGATGAGCAAACCTCCAAGGCACGTATCAGATGTAGAGGTACATCACAAATAG
AA sequence Show only first row Show all	>Potri.018G009400.1 pacid=42801996 polypeptide=Potri.018G009400.1.p locus=Potri.018G009400 ID=Potri.018G009400.1.v4.1 annot-version=v4.1 MENRSEAEASPYKSLVAAVSYGIASMAMVFINKAILMQYGHSMTLLTLQQLATALLIHFGRQMGYTRSRGVDMQTAKKLLPVSLFYNANVAFALASLKGV NIPMYIAIKRLTPLAVLIAGFSSGKGKPTTQVTLSVLLIAAGVIIAALGDFSFDLWGYGMALTSVFFQTMYLVLVERSGAEDGLSSIEIMFYNSFLSLPF LIFLIIATGEFPNSLALLFAKSNSLSFLVILVISLVMGIVLNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVEVHALNVTGLVINTTGGVWYS YAKYQQKMSKPPRHVSDVEVHHK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31600			UDP-N-acetylglucosamine (UAA) ...		Potri.018G009400 [exp]	0	1
AT5G27200		ACP5	acyl carrier protein 5 (.1)		Potri.005G044800 [exp]	9.64	0.7489	Pt-ACP1.1
AT4G09510		A/N-InvI, CINV2	alkaline/neutral invertase I, ...		Potri.019G082000 [exp]	10.39	0.7029	Pt-INV1.2
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Potri.014G128400 [exp]	14.24	0.7096
AT5G28050			Cytidine/deoxycytidylate deami...		Potri.010G003500 [exp]	14.38	0.7312
AT5G18580		FASS2, TON2, GD...	GORDO, FASS 1, EMBRYO DEFECTIV...		Potri.008G215300 [exp]	15.32	0.7191
AT4G00570		NAD-ME2	NAD-dependent malic enzyme 2 (...		Potri.014G079900 [exp]	17.02	0.6385
AT1G09160			Protein phosphatase 2C family ...		Potri.013G011600 [exp]	21.58	0.7416
AT3G50530		CRK	CDPK-related kinase (.1.2)		Potri.007G040800 [exp]	22.49	0.6986
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Potri.013G108900 [exp]	31.74	0.6473
AT1G61150			LisH and RanBPM domains contai...		Potri.011G046200 [exp]	32.95	0.7129

Compare expression of checked genes

Potri.018G009400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.